Clone LD03464 Report

Search the DGRC for LD03464

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:34
Well:64
Vector:pBS SK-
Associated Gene/TranscriptCG8841-RA
Protein status:LD03464.pep: gold
Preliminary Size:3669
Sequenced Size:3548

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8841 2003-01-01 Sim4 clustering to Release 3
CG8841 2005-03-18 Blastp of sequenced clone
CG8841 2008-04-29 Release 5.5 accounting
CG8841 2008-08-15 Release 5.9 accounting
CG8841 2008-12-18 5.12 accounting

Clone Sequence Records

LD03464.complete Sequence

3548 bp (3548 high quality bases) assembled on 2005-03-18

GenBank Submission: BT021962

> LD03464.complete
CTAAGTTACACTGGCATTTGGTGCGTAGGCGAATTTCTAATTGGAATCGT
TCGATTTTTGAAAAAGAATCGCATTAAATGCAAAGCATTCCTGTTCCAGA
CTACTGCGCACACTTGCACTGAGGCGATCGAGCACGGGGCAGGTGGATTT
ACAGGACTCAGCGATACCAAAGCAGCCCACAGGCCGAACAATATGGGAAA
CACGGACTCCAAGTTGAACTTTCGCAAGGCGATTGTGCAGCTGACGCAGA
AGAACCAGAAGATCGACCCCAGCGACGAGCAGTTCTGGGAGCAGTTCTGG
CAGGGCCACCAGACGACGCTGGAGGATGTGTTCGCGCTGGTCACCTCGAG
CGAGATTCGCCAGATACGGAACGAGAATCCAGCCAACCTGGCCACCTTAT
GCTACAAGGCGGTGGAAAAGCTTGCCCAGGCGGTAGACAGCAGTTGTCGC
ACGCAGGCGGAGCAGCAGTGCGTTTTGAACTGCGTGCGGCTGCTCGTCCG
GTGTCTGCCGTACATTTTCGAGGACGAAAAGTGGCGCGACTTCTTCTGGA
GCAGCCTGCCATCGCAGGACAAGACCATGCCGTTGGCTCAGTCACTGCTC
AATGCCACCTGCGACCTTCTTTTCTGTCCCGACTTCACGGTTACGGCCAC
GCGGCGTGCGGGCCCCGAGAAGGCCGAGGAGTTGGCGAACATCGATAGCT
GCGAGTACATTTGGGAAGCGGGCGTGGGTTTCGCCCAGTCACCGCCCCAC
AACGCCCACATGGAGCGCAGGCGCACGGAGTTGCTGAAGCTATTACTCAC
CTGCTTCTCGGAGCCCATGTACCGATCGCCGCAGCAGTCCGAGGAGCCCA
ACAAGTGGATAGCATATTTCACCTCGGCCGACAATCGCCATGCCCTGCCG
CTGTTCACCTCGTTTCTGAACACCGTGTGCTCCTACGATCCGGTGGGCTT
CGGCGTGCCCTACAATCACCTGCTGTTTGCAGACACCACAGAGCCCCTGG
TGGAAGCGTGCCTTCAACTGCTCATTGTCACCTTGGATCACGATATGGTG
GTGCAGCAGCAACTCACACAACCCGGACAGGCGTCCTACGACGAGGGCAA
TTGCGGCGACAACTTGTTCATTAACTATCTTTCGAGGGTTCACCGCGACG
AGGACTTTCACTTTGTGCTCAAGGGCATAACCAGGCTGCTGAACAACCCA
CTGGTCCAGAACTATTTGCCCAATTCCACAAAGCGACTTCATTGCCACCA
GGAGCTGCTTATTTTGTTTTGGAAAATATGCGACTACAACAAAAAGTTTC
TGTATTTTGTGCTAAAGAGCTCCGATGTTCTGGACATCCTGATTCCCATT
CTGTATCACCTAAACTACTCCCGAGCGGATCAATCTCGAGTGGGCTTGAT
GCATATTGGAGTATTCATACTGTTGCTCCTATCGGGTGAGCGAAACTTTG
GGGTTCGGCTTAACAAAGCATACTCCGCCACGGTGCCCATGGATATACCT
GTGTTTACTGGAACCCATGCGGACTTACTCATCACTGTGTTCCACAAAAT
AATAGCCACTGGCCACCAGAGGCTGCAGCCGCTTTTCGATTGTCTGCTGA
CCATTCTGGTAAATGTCTCACCATATCTGAAAACCCTCTCGATGGTGGCT
AGTGTAAAGATGTTGCATCTCCTGGAGGCTTTTAGCACACCCTGGTTTCT
GCTATCGGCACCCAGCAATCATCATTTGGTGTTTTTCCTGCTGGAGATCT
TCAATAACATTATACAGTATCAGTTCGATGGCAACTCGAATCTAGTCTAC
ACCATAATTCGAAAGCGTCATGTGTTCCATGCCATGGCAAATCTCCCGAC
CGATATGGCTGGCATAGCCAAGTGCCTGAGTGGCCGTAAAACAGGTGGAA
AGTTTAACTTGCCGCGGGTACCACAGCGAAGAACGCCAGCTGTGTCCCAG
GAACTGCCCTCGGCCCACGTGCCAGAAGAGTACAACGAAGAAGACGAGGA
TGAGGACGAGGAGGAGATAATTAATGAAGAGCCCAAGGCGGAAGAGGATC
TCGAATCGGAGACAGAGTCTCATGAGCGATCTCAGGCGGGGGAGCTGCAG
TCGGACGTTCTCACGGCGCAGCCAGCCGAGCCAGGAACACTGAAAACGTC
CTTGTTGGACACCCCGGGCATTACTCAGATGACGGAGCGGGAGCAGGCGC
ATCCAAATGACAAGCCTCAGGTGGAGGATTCTACAGACATTGTGCCCTAC
GACAGATCAGCCGCTTCGACGCCAACTGACGAACGCAAGTCCACCTCACC
CACGGAATTGTCCCGCTTGTCGGTGGCCCACAGGGCCAGCATTCGCATGG
TGCCTGGCGAGAGCGATCGTTGGACGCCCACGCCCGAGTGGATCGTCTCC
TGGCGCTCCAAGCTGCCGCTGCAGACCATCATGCGACTGCTTCAGGTCCT
AGTGCCCCAGGTGGAGAAGATCTGCATTGACAAAGGACTGACCGACGAGT
CGGAGATCCTCAAGTTTCTGCAACACGGAACGTTAGTGGGACTGCTCCCA
GTGCCGCATCCCATTCTCATCCGAAAGTACCAGGCCAATGCGGGCACAAC
GGCATGGTTCCGCACCTACATCTGGGGTGTCATCTACCTGCGCAACGTGG
AGCCTGCCATCTGGTACGATACGGAGGTCAAGCTCTTCGAGATTCAGCGC
GTCTAGGTCAGTAAGTGGACTCCCAGCTACACCAGCAGCGCAATCGTAGC
TTACACGCTTTGGCATTTACTGTAGTTAATTTATTTAGTACATATTTCAT
TCCAAATGTTTTTGTGAAGAATCAGTGTGTAATGAACTACCTTTCCCACA
ATTTTGCTTATTGGCAACAAAAAAAATGAGGCTTATCAGTTACGATGTGG
CATTGAGATCCATTCAACAGATTTGTTATCGGCTTTTAGCATTGATATTT
AATTGCTTTCCTAATTTGTTTTGAAGAGTGTTCTAAAAAACAGTATAAGC
ACAAAGTGTTTTTATTTTAGTTAATGACTAAATTATTAAACAACTCATGT
TTTTGTAATCTGTGACAGAAAATGTTCCTTGTGCCGTATATTTTATTGCA
TGGTTTTATTTATTTTATATTTTAATAATTTAAAAATTTCCTGTTTTTAC
TTATGTATGTATTTAAGGTGCAAATACCAAGAATAAATTACTTTCACTCA
GCCACTCTACAAACGATTCGCTTTATCCAAACAAATTTGTAACTGCACCT
ATTGACACCATAAAAAGCTTTACGTTCTCTTGTAATGATTAGGAAACTTT
AGTTGAGTCCAATGAACTGCTTTGTAAACTTAATTAAATATAGACATTAA
TGATAGAATTGAGAAAGTGTATTAATTTACTGTCTACGTGTGCTTATAAA
CTATATACACAAACTAAACTTATGACACCTATACAAGTCAGTTTATATAA
ATCATTTACGAAATATAGAGCAGAACCCAAGATAAGTAATAAATAATAAA
TAAATTTCATAAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD03464.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8841-RB 3516 CG8841-RB 1..3516 1..3516 17580 100 Plus
CG8841-RC 3530 CG8841-RC 111..3530 97..3516 17100 100 Plus
CG8841-RA 3486 CG8841-RA 69..3486 99..3516 17090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8209748..8211829 3516..1435 10225 99.6 Minus
chr2R 21145070 chr2R 8211894..8213333 1440..1 7125 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12322505..12324588 3518..1435 10420 100 Minus
2R 25286936 2R 12324653..12326092 1440..1 7200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12323704..12325787 3518..1435 10420 100 Minus
2R 25260384 2R 12325852..12327291 1440..1 7200 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:44:47 has no hits.

LD03464.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:45:27 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8209779..8211828 1436..3485 97 <- Minus
chr2R 8211899..8213333 1..1435 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:32:41 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RB 1..2514 193..2706 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:07:37 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RB 1..2514 193..2706 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:34 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RC 1..2514 193..2706 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:52:32 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RB 1..2514 193..2706 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:19:38 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RC 1..2514 193..2706 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:57:51 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RB 1..3516 1..3516 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:07:36 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RB 1..3516 1..3516 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:34 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RB 24..3539 1..3516 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:52:32 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RB 1..3516 1..3516 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:19:38 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
CG8841-RB 24..3539 1..3516 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:27 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12322507..12324587 1436..3516 100 <- Minus
2R 12324658..12326092 1..1435 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:27 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12322507..12324587 1436..3516 100 <- Minus
2R 12324658..12326092 1..1435 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:45:27 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12322507..12324587 1436..3516 100 <- Minus
2R 12324658..12326092 1..1435 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:34 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8210012..8212092 1436..3516 100 <- Minus
arm_2R 8212163..8213597 1..1435 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:27:29 Download gff for LD03464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12323706..12325786 1436..3516 100 <- Minus
2R 12325857..12327291 1..1435 100   Minus

LD03464.hyp Sequence

Translation from 0 to 2705

> LD03464.hyp
LSYTGIWCVGEFLIGIVRFLKKNRIKCKAFLFQTTAHTCTEAIEHGAGGF
TGLSDTKAAHRPNNMGNTDSKLNFRKAIVQLTQKNQKIDPSDEQFWEQFW
QGHQTTLEDVFALVTSSEIRQIRNENPANLATLCYKAVEKLAQAVDSSCR
TQAEQQCVLNCVRLLVRCLPYIFEDEKWRDFFWSSLPSQDKTMPLAQSLL
NATCDLLFCPDFTVTATRRAGPEKAEELANIDSCEYIWEAGVGFAQSPPH
NAHMERRRTELLKLLLTCFSEPMYRSPQQSEEPNKWIAYFTSADNRHALP
LFTSFLNTVCSYDPVGFGVPYNHLLFADTTEPLVEACLQLLIVTLDHDMV
VQQQLTQPGQASYDEGNCGDNLFINYLSRVHRDEDFHFVLKGITRLLNNP
LVQNYLPNSTKRLHCHQELLILFWKICDYNKKFLYFVLKSSDVLDILIPI
LYHLNYSRADQSRVGLMHIGVFILLLLSGERNFGVRLNKAYSATVPMDIP
VFTGTHADLLITVFHKIIATGHQRLQPLFDCLLTILVNVSPYLKTLSMVA
SVKMLHLLEAFSTPWFLLSAPSNHHLVFFLLEIFNNIIQYQFDGNSNLVY
TIIRKRHVFHAMANLPTDMAGIAKCLSGRKTGGKFNLPRVPQRRTPAVSQ
ELPSAHVPEEYNEEDEDEDEEEIINEEPKAEEDLESETESHERSQAGELQ
SDVLTAQPAEPGTLKTSLLDTPGITQMTEREQAHPNDKPQVEDSTDIVPY
DRSAASTPTDERKSTSPTELSRLSVAHRASIRMVPGESDRWTPTPEWIVS
WRSKLPLQTIMRLLQVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLP
VPHPILIRKYQANAGTTAWFRTYIWGVIYLRNVEPAIWYDTEVKLFEIQR
V*

LD03464.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8841-PB 837 CG8841-PB 1..837 65..901 4411 100 Plus
CG8841-PA 837 CG8841-PA 1..837 65..901 4411 100 Plus
CG8841-PC 837 CG8841-PC 1..837 65..901 4411 100 Plus

LD03464.pep Sequence

Translation from 192 to 2705

> LD03464.pep
MGNTDSKLNFRKAIVQLTQKNQKIDPSDEQFWEQFWQGHQTTLEDVFALV
TSSEIRQIRNENPANLATLCYKAVEKLAQAVDSSCRTQAEQQCVLNCVRL
LVRCLPYIFEDEKWRDFFWSSLPSQDKTMPLAQSLLNATCDLLFCPDFTV
TATRRAGPEKAEELANIDSCEYIWEAGVGFAQSPPHNAHMERRRTELLKL
LLTCFSEPMYRSPQQSEEPNKWIAYFTSADNRHALPLFTSFLNTVCSYDP
VGFGVPYNHLLFADTTEPLVEACLQLLIVTLDHDMVVQQQLTQPGQASYD
EGNCGDNLFINYLSRVHRDEDFHFVLKGITRLLNNPLVQNYLPNSTKRLH
CHQELLILFWKICDYNKKFLYFVLKSSDVLDILIPILYHLNYSRADQSRV
GLMHIGVFILLLLSGERNFGVRLNKAYSATVPMDIPVFTGTHADLLITVF
HKIIATGHQRLQPLFDCLLTILVNVSPYLKTLSMVASVKMLHLLEAFSTP
WFLLSAPSNHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRKRHVFHAMAN
LPTDMAGIAKCLSGRKTGGKFNLPRVPQRRTPAVSQELPSAHVPEEYNEE
DEDEDEEEIINEEPKAEEDLESETESHERSQAGELQSDVLTAQPAEPGTL
KTSLLDTPGITQMTEREQAHPNDKPQVEDSTDIVPYDRSAASTPTDERKS
TSPTELSRLSVAHRASIRMVPGESDRWTPTPEWIVSWRSKLPLQTIMRLL
QVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPHPILIRKYQANA
GTTAWFRTYIWGVIYLRNVEPAIWYDTEVKLFEIQRV*

LD03464.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12072-PA 836 GF12072-PA 1..836 1..837 4342 96.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22588-PA 837 GG22588-PA 1..837 1..837 4480 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22977-PA 883 GH22977-PA 1..883 1..837 3789 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8841-PB 837 CG8841-PB 1..837 1..837 4411 100 Plus
CG8841-PA 837 CG8841-PA 1..837 1..837 4411 100 Plus
CG8841-PC 837 CG8841-PC 1..837 1..837 4411 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18945-PA 764 GI18945-PA 12..764 110..837 3294 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11258-PA 742 GL11258-PA 1..540 1..540 2867 97.4 Plus
Dper\GL11258-PA 742 GL11258-PA 539..742 635..837 971 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21361-PA 838 GA21361-PA 1..838 1..837 4234 93.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20368-PA 837 GM20368-PA 1..837 1..837 4485 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25849-PA 820 GD25849-PA 1..820 1..837 4356 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21549-PA 867 GJ21549-PA 1..867 1..837 3933 87.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21409-PA 856 GK21409-PA 1..856 1..837 3881 88 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13458-PA 837 GE13458-PA 1..837 1..837 4485 99 Plus