BDGP Sequence Production Resources |
Search the DGRC for LD03471
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 34 |
Well: | 71 |
Vector: | pBS SK- |
Associated Gene/Transcript | Sec13-RA |
Protein status: | LD03471.pep: gold |
Preliminary Size: | 1513 |
Sequenced Size: | 1522 |
Gene | Date | Evidence |
---|---|---|
CG6773 | 2001-01-01 | Release 2 assignment |
CG6773 | 2002-12-11 | Blastp of sequenced clone |
CG6773 | 2003-01-01 | Sim4 clustering to Release 3 |
sec13 | 2008-04-29 | Release 5.5 accounting |
sec13 | 2008-08-15 | Release 5.9 accounting |
sec13 | 2008-12-18 | 5.12 accounting |
1522 bp (1522 high quality bases) assembled on 2002-12-11
GenBank Submission: AF160909
> LD03471.complete CTCAACCAGGTTCCACGTCAAGCGCCGGAAAAAAACACGACTTGCATTTA ATCAATTTATCTGGCGACCGGACGAACGGATTTCGAGCAAGATGGTGAGC CTGCTGCAAGAGATCGACACCGAGCACGAGGACATGGTCCACCACGCAGC GCTGGACTTCTACGGCCTACTGTTGGCCACCTGCTCCTCGGACGGCAGCG TCCGCATCTTTCACTCGCGCAAAAACAATAAGGCGCTCGCCGAGCTCAAG GGACACCAGGGACCAGTGTGGCAGGTGGCCTGGGCACATCCCAAGTTTGG CAACATACTGGCATCGTGCTCCTACGACCGCAAGGTGATCGTCTGGAAGT CCACAACGCCCCGGGATTGGACTAAGCTCTACGAATACAGCAACCACGAC TCCTCGGTAAACTCGGTGGACTTCGCGCCATCCGAGTACGGATTGGTGTT GGCCTGCGCCAGTTCGGATGGCTCGGTATCGGTGCTCACCTGCAACACGG AGTACGGTGTGTGGGATGCCAAGAAGATACCGAATGCGCACACGATCGGA GTGAATGCCATCTCGTGGTGCCCCGCCCAGGCACCAGATCCAGCATTTGA CCAGCGCGTAACTTCGCGTTCGGCGGCCGTAAAGCGCCTAGTGAGCGGTG GTTGCGATAATTTAGTGAAGATTTGGCGGGAGGACAACGACCGCTGGGTG GAGGAGCACCGACTGGAGGCGCACTCGGATTGGGTGCGCGACGTGGCCTG GGCGCCGTCGATCGGATTGCCCCGCTCGCAGATTGCCACGGCTTCGCAGG ATCGCCATGTGATTGTGTGGAGCAGCAACGCAGATCTATCCGAGTGGACC TCGACTGTGCTGCACACATTCGACGATGCCGTGTGGAGCATCTCGTGGTC AACCACCGGCAACATTCTTGCCGTCACCGGTGGGGACAACAATGTCACAT TGTGGAAGGAGAACACGGAGGGCCAATGGATCCGCATCAACTACGAGTCG GGTACGGCCATCCAGTCGAAGCAGCCCTCGCACCTTCCGCATTCCCACTC CCAGCAGCAGCAGGCGCTACAACAGCACCAACAACAGGCGCCATCGCATC CAGGTCCTTCCTCCGATTCGGAGCATAGCTCGAACCTGTCCAACTCGCAG CTCTCCAACTGAGCCAGCCCCGAAATATTGTCGTGCTGAAGTCGTGGTTA AAAGTGTTACTTTACAAATATATATATACGAAATACTATTTAATGTGCCC CTTTAAACGCTGTTTAGTGTATGTTTATTTGGACTTCATATGGGATCCCT ATTTGAATCTTCTGAAATTATAATGAATTCTAAAGACAAGTTTTTGTCGA AATGGTATCATTTTTTTTAAGTTTTATCAAATATATTTGCAAATTGTAAG TAGTATGTATTTAAAAATAATAGTATAATAAGATTTAAATAATTAACCAA ATTTTATTCAAACTTATTATTTTTAACCATACAGATAAATTCCAAAACTA AAATTTTTACACAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sec13-RA | 1611 | sec13-RA | 99..1611 | 1..1513 | 7565 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
transib3 | 2883 | transib3 TRANSIB3 2883bp | 2571..2698 | 1374..1490 | 154 | 65.1 | Plus |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 678..772 | 1376..1470 | 141 | 63.5 | Plus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1123..1241 | 1476..1360 | 139 | 60.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6803 | 1020..1100 | 135 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6815 | 1013..1091 | 134 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2384 | 1013..1087 | 132 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1043..1123 | 1014..1093 | 132 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2665 | 1018..1086 | 129 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6782 | 1052..1100 | 128 | 73.5 | Plus |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 4691..4730 | 1406..1445 | 128 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2541 | 1052..1094 | 125 | 76.7 | Plus |
blood | 7410 | blood BLOOD 7410bp | 6849..7001 | 1347..1497 | 121 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2396 | 1052..1102 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6843 | 1018..1086 | 113 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6836 | 973..1091 | 112 | 58.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19179974..19180351 | 1..378 | 100 | -> | Plus |
chr3R | 19180797..19181825 | 379..1407 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec13-RA | 1..1071 | 92..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec13-RA | 1..1071 | 92..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec13-RA | 1..1071 | 92..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec13-RA | 1..1071 | 92..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec13-RA | 1..1071 | 92..1162 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec13-RA | 8..1519 | 1..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec13-RA | 8..1519 | 1..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec13-RA | 13..1343 | 1..1331 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec13-RA | 8..1519 | 1..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec13-RB | 298..1809 | 1..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23356575..23356952 | 1..378 | 100 | -> | Plus |
3R | 23357398..23358531 | 379..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23356575..23356952 | 1..378 | 100 | -> | Plus |
3R | 23357398..23358531 | 379..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23356575..23356952 | 1..378 | 100 | -> | Plus |
3R | 23357398..23358531 | 379..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19182297..19182674 | 1..378 | 100 | -> | Plus |
arm_3R | 19183120..19184253 | 379..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23097406..23097783 | 1..378 | 100 | -> | Plus |
3R | 23098229..23099362 | 379..1512 | 100 | Plus |
Translation from 0 to 1161
> LD03471.hyp STRFHVKRRKKTRLAFNQFIWRPDERISSKMVSLLQEIDTEHEDMVHHAA LDFYGLLLATCSSDGSVRIFHSRKNNKALAELKGHQGPVWQVAWAHPKFG NILASCSYDRKVIVWKSTTPRDWTKLYEYSNHDSSVNSVDFAPSEYGLVL ACASSDGSVSVLTCNTEYGVWDAKKIPNAHTIGVNAISWCPAQAPDPAFD QRVTSRSAAVKRLVSGGCDNLVKIWREDNDRWVEEHRLEAHSDWVRDVAW APSIGLPRSQIATASQDRHVIVWSSNADLSEWTSTVLHTFDDAVWSISWS TTGNILAVTGGDNNVTLWKENTEGQWIRINYESGTAIQSKQPSHLPHSHS QQQQALQQHQQQAPSHPGPSSDSEHSSNLSNSQLSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sec13-PB | 356 | CG6773-PB | 1..356 | 31..386 | 1920 | 100 | Plus |
Sec13-PA | 356 | CG6773-PA | 1..356 | 31..386 | 1920 | 100 | Plus |
Nup44A-PA | 354 | CG8722-PA | 4..307 | 35..326 | 357 | 27.7 | Plus |
Nup44A-PC | 354 | CG8722-PC | 4..307 | 35..326 | 357 | 27.7 | Plus |
Nup44A-PB | 354 | CG8722-PB | 4..307 | 35..326 | 357 | 27.7 | Plus |
Translation from 91 to 1161
> LD03471.pep MVSLLQEIDTEHEDMVHHAALDFYGLLLATCSSDGSVRIFHSRKNNKALA ELKGHQGPVWQVAWAHPKFGNILASCSYDRKVIVWKSTTPRDWTKLYEYS NHDSSVNSVDFAPSEYGLVLACASSDGSVSVLTCNTEYGVWDAKKIPNAH TIGVNAISWCPAQAPDPAFDQRVTSRSAAVKRLVSGGCDNLVKIWREDND RWVEEHRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIVWSSNADLS EWTSTVLHTFDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQWIRIN YESGTAIQSKQPSHLPHSHSQQQQALQQHQQQAPSHPGPSSDSEHSSNLS NSQLSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16993-PA | 363 | GF16993-PA | 1..347 | 1..345 | 1644 | 92.8 | Plus |
Dana\GF13653-PA | 354 | GF13653-PA | 4..307 | 5..296 | 335 | 27.7 | Plus |
Dana\GF20651-PA | 698 | GF20651-PA | 420..660 | 25..297 | 189 | 28.5 | Plus |
Dana\GF12085-PA | 335 | GF12085-PA | 10..238 | 52..311 | 177 | 28.1 | Plus |
Dana\GF11078-PA | 704 | GF11078-PA | 427..645 | 32..288 | 166 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11201-PA | 356 | GG11201-PA | 1..356 | 1..356 | 1871 | 99.2 | Plus |
Dere\GG23322-PA | 354 | GG23322-PA | 4..307 | 5..296 | 333 | 27.4 | Plus |
Dere\GG24716-PA | 700 | GG24716-PA | 422..662 | 25..297 | 187 | 28.5 | Plus |
Dere\GG22391-PA | 335 | GG22391-PA | 10..222 | 52..289 | 167 | 26.7 | Plus |
Dere\GG22709-PA | 704 | GG22709-PA | 427..645 | 32..288 | 164 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19595-PA | 353 | GH19595-PA | 1..337 | 1..345 | 1619 | 88.4 | Plus |
Dgri\GH21895-PA | 349 | GH21895-PA | 4..302 | 5..296 | 329 | 27.5 | Plus |
Dgri\GH11222-PA | 766 | GH11222-PA | 488..724 | 25..292 | 180 | 27.5 | Plus |
Dgri\GH22988-PA | 331 | GH22988-PA | 10..218 | 52..289 | 162 | 28.4 | Plus |
Dgri\GH20712-PA | 706 | GH20712-PA | 429..647 | 32..288 | 162 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sec13-PB | 356 | CG6773-PB | 1..356 | 1..356 | 1920 | 100 | Plus |
Sec13-PA | 356 | CG6773-PA | 1..356 | 1..356 | 1920 | 100 | Plus |
Nup44A-PA | 354 | CG8722-PA | 4..307 | 5..296 | 357 | 27.7 | Plus |
Nup44A-PC | 354 | CG8722-PC | 4..307 | 5..296 | 357 | 27.7 | Plus |
Nup44A-PB | 354 | CG8722-PB | 4..307 | 5..296 | 357 | 27.7 | Plus |
ebi-PA | 700 | CG4063-PA | 422..658 | 25..292 | 206 | 28.6 | Plus |
Ciao1-PA | 335 | CG12797-PA | 10..222 | 52..289 | 200 | 27.4 | Plus |
Taf5-PA | 704 | CG7704-PA | 427..645 | 32..288 | 180 | 27.1 | Plus |
Lis-1-PG | 411 | CG8440-PG | 149..366 | 12..243 | 171 | 26.4 | Plus |
Lis-1-PF | 411 | CG8440-PF | 149..366 | 12..243 | 171 | 26.4 | Plus |
Lis-1-PB | 411 | CG8440-PB | 149..366 | 12..243 | 171 | 26.4 | Plus |
Lis-1-PA | 411 | CG8440-PA | 149..366 | 12..243 | 171 | 26.4 | Plus |
CG3436-PC | 347 | CG3436-PC | 54..305 | 12..292 | 168 | 23.4 | Plus |
CG3436-PA | 347 | CG3436-PA | 54..305 | 12..292 | 168 | 23.4 | Plus |
Nle-PA | 488 | CG2863-PA | 224..449 | 28..293 | 158 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\moj137-PA | 354 | GI23988-PA | 1..315 | 1..315 | 1566 | 91.1 | Plus |
Dmoj\GI20394-PA | 356 | GI20394-PA | 4..308 | 5..296 | 324 | 27.7 | Plus |
Dmoj\GI21646-PA | 723 | GI21646-PA | 445..685 | 25..297 | 178 | 28.4 | Plus |
Dmoj\GI18956-PA | 331 | GI18956-PA | 10..218 | 52..289 | 161 | 29 | Plus |
Dmoj\GI20797-PA | 708 | GI20797-PA | 431..649 | 32..288 | 157 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13786-PA | 358 | GL13786-PA | 1..317 | 1..317 | 1605 | 93.4 | Plus |
Dper\GL11480-PA | 354 | GL11480-PA | 4..307 | 5..296 | 336 | 28.3 | Plus |
Dper\GL18875-PA | 694 | GL18875-PA | 416..656 | 25..297 | 188 | 28.5 | Plus |
Dper\GL20028-PA | 684 | GL20028-PA | 407..625 | 32..288 | 165 | 27.9 | Plus |
Dper\GL10827-PA | 324 | GL10827-PA | 10..207 | 52..274 | 156 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19854-PA | 356 | GA19854-PA | 1..317 | 1..317 | 1613 | 93.7 | Plus |
Dpse\GA21281-PA | 354 | GA21281-PA | 4..307 | 5..296 | 333 | 28 | Plus |
Dpse\GA17928-PA | 694 | GA17928-PA | 416..656 | 25..297 | 188 | 28.5 | Plus |
Dpse\GA11817-PA | 335 | GA11817-PA | 10..238 | 52..311 | 172 | 28.1 | Plus |
Dpse\GA20529-PA | 700 | GA20529-PA | 423..641 | 32..288 | 165 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26501-PA | 356 | GM26501-PA | 1..356 | 1..356 | 1883 | 99.4 | Plus |
Dsec\GM20999-PA | 354 | GM20999-PA | 4..307 | 5..296 | 339 | 27.7 | Plus |
Dsec\GM16739-PA | 700 | GM16739-PA | 422..658 | 25..292 | 186 | 28.3 | Plus |
Dsec\GM20485-PA | 704 | GM20485-PA | 427..645 | 32..288 | 173 | 28.3 | Plus |
Dsec\GM20174-PA | 335 | GM20174-PA | 10..222 | 52..289 | 162 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21013-PA | 356 | GD21013-PA | 1..356 | 1..356 | 1883 | 99.4 | Plus |
Dsim\GD10530-PA | 354 | GD10530-PA | 4..307 | 5..296 | 338 | 27.7 | Plus |
Dsim\GD23022-PA | 700 | GD23022-PA | 422..658 | 25..292 | 186 | 28.3 | Plus |
Dsim\GD25948-PA | 704 | GD25948-PA | 427..645 | 32..288 | 172 | 28.3 | Plus |
Dsim\GD25651-PA | 335 | GD25651-PA | 10..222 | 52..289 | 165 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23624-PA | 352 | GJ23624-PA | 1..315 | 1..315 | 1602 | 93 | Plus |
Dvir\GJ22120-PA | 354 | GJ22120-PA | 4..308 | 5..297 | 332 | 28.8 | Plus |
Dvir\GJ17774-PA | 709 | GJ17774-PA | 431..671 | 25..297 | 182 | 27.8 | Plus |
Dvir\GJ21562-PA | 331 | GJ21562-PA | 10..218 | 52..289 | 160 | 29 | Plus |
Dvir\GJ24581-PA | 347 | GJ24581-PA | 54..311 | 12..302 | 159 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22486-PA | 368 | GK22486-PA | 1..352 | 1..345 | 1582 | 88.4 | Plus |
Dwil\GK21742-PA | 356 | GK21742-PA | 4..307 | 5..296 | 332 | 28.4 | Plus |
Dwil\GK22124-PA | 335 | GK22124-PA | 10..238 | 52..311 | 163 | 27.4 | Plus |
Dwil\GK23911-PA | 347 | GK23911-PA | 54..311 | 12..302 | 149 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10367-PA | 357 | GE10367-PA | 1..357 | 1..356 | 1855 | 98.3 | Plus |
Dyak\GE19167-PA | 354 | GE19167-PA | 4..307 | 5..296 | 339 | 27.4 | Plus |
Dyak\GE16791-PA | 700 | GE16791-PA | 422..662 | 25..297 | 188 | 28.5 | Plus |
Dyak\GE12280-PA | 335 | GE12280-PA | 10..222 | 52..289 | 166 | 27.4 | Plus |
Dyak\GE13065-PA | 704 | GE13065-PA | 427..645 | 32..288 | 165 | 27.9 | Plus |