Clone LD03534 Report

Search the DGRC for LD03534

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:35
Well:34
Vector:pBS SK-
Associated Gene/TranscriptmRpL51-RA
Protein status:LD03534.pep: gold
Preliminary Size:797
Sequenced Size:595

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13098 2001-01-01 Release 2 assignment
CG13098 2001-07-04 Blastp of sequenced clone
CG13098 2003-01-01 Sim4 clustering to Release 3
mRpL51 2008-04-29 Release 5.5 accounting
mRpL51 2008-08-15 Release 5.9 accounting
mRpL51 2008-12-18 5.12 accounting

Clone Sequence Records

LD03534.complete Sequence

595 bp (595 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051652

> LD03534.complete
TTTACAATTATCTAATCGTTAATTAAAACATAGCCATGTCTTGGCTGGGA
AGTATGATTCAAAAACTTGGCAGAGCCACGCTCCTTGCTGTGGGCGGAAA
ACCCTTGGCTCCGATGGCATCAACCAGCTACACCGTGCGGCAGTTATCCC
ATGCCGAGCGACGAGCACGCGGTCCCACTGTGCGGCGCTATGGATATGAG
GACAAGATCTTCAAGAGCGGACTACTCCCCCATGTGGACAATGGACAGAA
ACTGCCGATGCCGGTGTATCGCCCAAAGAACGCCTGGTCAAAGAAACGTG
CGTTGTTTGGCCAGAACGACTACATCGACATCCTGGGCAACGATCGTCTG
CATCCAGTCAAGGTGCTCTACTCCCTGCCATCCTGGCTGCGTGGCGTCTC
CGGCAATGAGTACCAGGTGCTTCTCCGCAAACGTAAGCTGCTCGAGAAGT
CCAAGTATCCCATCGCCCGACCCACCAAGTGGCGGGAAATGGAGAAACGC
ATCCTCTACTTGTACAAGTTCCTCAACCGCAAGACGAAGACGGGCTATTC
ACATCAGTAAAAAACCATTACAATCAAAAAAAAAAAAAAAAAAAA

LD03534.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL51-RA 625 mRpL51-RA 51..625 1..575 2875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8515665..8516239 575..1 2875 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8516745..8517327 583..1 2900 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8516745..8517327 583..1 2900 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 13:11:55 has no hits.

LD03534.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:13:01 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8515665..8516239 1..575 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:32:53 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 1..525 36..560 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:01 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 1..525 36..560 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:53:25 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 1..525 36..560 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:43 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 1..525 36..560 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:51 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 1..525 36..560 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:32 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 51..624 1..574 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:01 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 51..624 1..574 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:53:25 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 54..628 1..575 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:43 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 51..624 1..574 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:51 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL51-RA 54..628 1..575 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:01 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8516753..8517327 1..575 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:01 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8516753..8517327 1..575 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:01 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8516753..8517327 1..575 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:53:25 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8516753..8517327 1..575 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:29 Download gff for LD03534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8516753..8517327 1..575 100   Minus

LD03534.hyp Sequence

Translation from 35 to 559

> LD03534.hyp
MSWLGSMIQKLGRATLLAVGGKPLAPMASTSYTVRQLSHAERRARGPTVR
RYGYEDKIFKSGLLPHVDNGQKLPMPVYRPKNAWSKKRALFGQNDYIDIL
GNDRLHPVKVLYSLPSWLRGVSGNEYQVLLRKRKLLEKSKYPIARPTKWR
EMEKRILYLYKFLNRKTKTGYSHQ*

LD03534.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL51-PA 174 CG13098-PA 1..174 1..174 919 100 Plus

LD03534.pep Sequence

Translation from 35 to 559

> LD03534.pep
MSWLGSMIQKLGRATLLAVGGKPLAPMASTSYTVRQLSHAERRARGPTVR
RYGYEDKIFKSGLLPHVDNGQKLPMPVYRPKNAWSKKRALFGQNDYIDIL
GNDRLHPVKVLYSLPSWLRGVSGNEYQVLLRKRKLLEKSKYPIARPTKWR
EMEKRILYLYKFLNRKTKTGYSHQ*

LD03534.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14366-PA 174 GF14366-PA 1..174 1..174 793 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24063-PA 181 GG24063-PA 1..154 1..154 794 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10768-PA 176 GH10768-PA 1..176 1..174 729 78.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL51-PA 174 CG13098-PA 1..174 1..174 919 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17630-PA 172 GI17630-PA 1..172 1..174 726 79.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25644-PA 174 GL25644-PA 1..174 1..174 796 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12045-PA 174 GA12045-PA 1..174 1..174 796 85.1 Plus
Dpse\GA24973-PA 174 GA24973-PA 1..174 1..174 795 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12836-PA 174 GM12836-PA 1..174 1..174 901 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22394-PA 174 GD22394-PA 1..174 1..174 898 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17543-PA 172 GJ17543-PA 1..172 1..174 715 78.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24833-PA 174 GK24833-PA 1..174 1..174 772 82.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10894-PA 174 GE10894-PA 1..174 1..174 887 97.1 Plus