Clone LD03548 Report

Search the DGRC for LD03548

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:35
Well:48
Vector:pBS SK-
Associated Gene/Transcriptmus81-RA
Protein status:LD03548.pep: gold
Preliminary Size:2210
Sequenced Size:2227

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3026 2001-01-01 Release 2 assignment
CG3026 2001-10-10 Blastp of sequenced clone
CG3026 2003-01-01 Sim4 clustering to Release 3
mus81 2008-04-29 Release 5.5 accounting
mus81 2008-08-15 Release 5.9 accounting
mus81 2008-12-18 5.12 accounting

Clone Sequence Records

LD03548.complete Sequence

2227 bp (2227 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061067

> LD03548.complete
AAAGCCATAATAAGCTTTAAACTAGTTGTACAGTAATAAAAATGCCACCA
CCAGAAGCCGGCAATTGAAGCGCGTTTATTTGCCGTGCATTAGTTTTATT
ATTTGGCATTGTTTTACATAATAAAAGTTGTGAAGCAATGGAGACCCGAC
TGGAAGTGCTCTTGCGGGAGCCGAATCCATTGTTCACCCGTTGGCTGGAG
CGCTGGCTGCGCGAAGCGGAGCGCCGAGAACAGAAGTCCCAGTTTAGCCT
GCGCCAGGCGTTGGAGTCCCTAAAAAGCTACCCTCTGCCATTGGCCAGCG
GACGAGACTGTTCCATTCTGCGCGGCTTTGGGGGCACCCTCTGCCAGCTA
ATCGACGAGGAACTTCGCCATCACAGAGGCCTCCAATTGCTGCCACAGGA
GGCCGTGGTTCAGGAGCGCTACGAGCAGCAGGTCCAGGCGGTAGTACGCA
AGGTTCAGGAGAAGCAGCTGGAACACCAGAAACGCCAGAATAAATGCGAC
AGGCCCAGGAAGCTAACCAAAAAAGATCTGGCGGAGCTGGCAGCCCTTGA
AGAGCGGGAGCGCGTCGTGCGAATGAAACCAGGTCAATTCCAGTTACTCC
TTTTGGTGGATACTCAGGAAACCAGTGGCAAAAACAAGAGAGTTCTGGAC
CAGACGAGGAGCTACTTGGAGTCCTTGGGAGCCCGTCATGAAGTGCGTCG
CCTGACAATCGGCGATTTCCTTTGGGTGGCCCAGGATCAAGAGGGCAATG
AACTGGTTTTACCCTACATTGTGGAGCGCAAGAGGATGGACGACCTGGCA
TCGAGTATTCGGGATGGTCGCTTCCACGAACAGAAGCACAGGCTGCAGCA
CTGCGGCCTGCAGCACATCATCTACCTGGTCGAGGACTATGGCGATAACG
AGCAGCTGGGCCTTCCACTGGACTCCTTGCAGCAGGCTCTGACTAATGCC
AAAGTTCAAACTGGTGTCCGAGTGGTGCGCACGGCGAATCATTACCGATC
CATGAGCTATTTGGCCGGAATGAGTCGCACCCTTGGCCAGATATTCGCCG
GCAAGAAGTTGCACAGCGTGGATCGCGGCGCCATCGACCAATCCACCTGC
CTGCTCACGCATTCCGACCTGGGGTTGCTCAAGTTTCGGGCCCTATATGA
GGATTCCGCAAAGAATGCCCAGCTCACAGTGCGCGAGGTTTTCGTGCAAC
AGTTGCTACAGCTGCATTCCCTTTCCCTCGAACGCGCCATGGCTATTGTG
GAAAGATACCCCACTCCACGCTGGCTGCTGGACGCATACGCGGAGTGTGC
AGACCAAAAGCAGGCCAGGCTACTCCTCGCCAGCATCCCGTGTGGACCCC
TGGAACGTCCACTGGGCGACAAGATCAGCCAGTGCCTACACGAATTCTAC
AGCACGCACTTTCGTTAGGATTAGCAATTGATTTTATGGGACATATCTAA
GGTTATATACACGAGTTTATACATAAGTGAGAGAGAGAATACGTTGGACA
TTGAATAGTGTGATCTAGTCTAAGCCAAAAAATGTACAAGTCAGCCGCCC
TTAGATGTTGCGGAAGTGCCGGATGGCCAGGTCCACCGGCAGGTCGAAGT
CAAATCGAGAAAGAGCATCGATGGAGCGCAGTGAGTCGCGGAATCCGGTG
CGGGCCACGTAGCTGTCTGCTGAGTAGTACGTGTCCACCAGTTCATGGCA
GCTGAGGATCAGGTTCAGCCACTCCACCAGCAAATGGGAACTGTTTGAAG
GAAGAGAAAAGCATTTCGAATGAAAGAAGTGTGATAAAAGCCAAGGTAAA
GGTCTATCCCCGCGTCCCTGTTAGCCTTATGCTTAAATTAATTCGGCAGA
CTGCAAAGTCAAAAGCTACCTGCACCTAGCTAAATATATTAATATTTACA
TATTTATATTTACATGTTAAAGCAAAAAATCGATTAAGCAATTCATTGAT
AAAAAAGTTTAAGACAGTAGAGAATTGACATTACCGCAGAATTGCTGATA
ATTGCAGTAAGAATATTTTGATTTTGGACACTTGTAATTATAAAAAGTTT
GTGTGTCTCTTGCTCTTTAAGATTCCTCTTTGCCAGGAAAATAACTATAA
AATGAAGATTTGAAGATGTAAAAGGCTAGTGCTTCAAACTATGCACCTGT
AAATAATATGGTATTGCAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

LD03548.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
mus81-RA 2173 mus81-RA 1..2173 1..2173 10865 100 Plus
CG3703-RA 2627 CG3703-RA 2297..2627 1740..1410 1655 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 835027..837199 1..2173 10850 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 941057..943230 1..2174 10870 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 949155..951328 1..2174 10870 100 Plus
Blast to na_te.dros performed 2019-03-15 23:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 4490..4534 1920..1876 126 75.6 Minus
diver2 4917 diver2 DIVER2 4917bp 418..477 1946..1888 117 68.3 Minus

LD03548.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:30:09 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 835027..837199 1..2173 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:32:56 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..1281 138..1418 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:17 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..1281 138..1418 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:52 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..1281 138..1418 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:04 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..1281 138..1418 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:46 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..1281 138..1418 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:31:03 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..2173 1..2173 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:17 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..2173 1..2173 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:52 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..2155 19..2173 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:05 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..2173 1..2173 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:46 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
mus81-RA 1..2155 19..2173 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:30:09 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
X 941057..943229 1..2173 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:30:09 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
X 941057..943229 1..2173 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:30:09 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
X 941057..943229 1..2173 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:52 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 835090..837262 1..2173 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:55 Download gff for LD03548.complete
Subject Subject Range Query Range Percent Splice Strand
X 949155..951327 1..2173 100   Plus

LD03548.pep Sequence

Translation from 137 to 1417

> LD03548.pep
METRLEVLLREPNPLFTRWLERWLREAERREQKSQFSLRQALESLKSYPL
PLASGRDCSILRGFGGTLCQLIDEELRHHRGLQLLPQEAVVQERYEQQVQ
AVVRKVQEKQLEHQKRQNKCDRPRKLTKKDLAELAALEERERVVRMKPGQ
FQLLLLVDTQETSGKNKRVLDQTRSYLESLGARHEVRRLTIGDFLWVAQD
QEGNELVLPYIVERKRMDDLASSIRDGRFHEQKHRLQHCGLQHIIYLVED
YGDNEQLGLPLDSLQQALTNAKVQTGVRVVRTANHYRSMSYLAGMSRTLG
QIFAGKKLHSVDRGAIDQSTCLLTHSDLGLLKFRALYEDSAKNAQLTVRE
VFVQQLLQLHSLSLERAMAIVERYPTPRWLLDAYAECADQKQARLLLASI
PCGPLERPLGDKISQCLHEFYSTHFR*

LD03548.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22118-PA 431 GF22118-PA 1..431 1..426 1623 76.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12821-PA 426 GG12821-PA 1..426 1..426 2068 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11984-PA 431 GH11984-PA 1..431 1..426 1322 65.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
mus81-PA 426 CG3026-PA 1..426 1..426 2188 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15607-PA 432 GI15607-PA 1..430 1..426 1326 64 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14215-PA 419 GL14215-PA 1..419 1..426 1570 73.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15732-PA 419 GA15732-PA 1..419 1..426 1585 74.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19103-PA 426 GM19103-PA 1..426 1..426 2151 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16537-PA 426 GD16537-PA 1..426 1..426 2078 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15211-PA 431 GJ15211-PA 1..431 1..425 1418 66.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24972-PA 412 GK24972-PA 1..412 1..425 1226 61.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16651-PA 425 GE16651-PA 1..425 1..426 2039 93.7 Plus

LD03548.hyp Sequence

Translation from 137 to 1417

> LD03548.hyp
METRLEVLLREPNPLFTRWLERWLREAERREQKSQFSLRQALESLKSYPL
PLASGRDCSILRGFGGTLCQLIDEELRHHRGLQLLPQEAVVQERYEQQVQ
AVVRKVQEKQLEHQKRQNKCDRPRKLTKKDLAELAALEERERVVRMKPGQ
FQLLLLVDTQETSGKNKRVLDQTRSYLESLGARHEVRRLTIGDFLWVAQD
QEGNELVLPYIVERKRMDDLASSIRDGRFHEQKHRLQHCGLQHIIYLVED
YGDNEQLGLPLDSLQQALTNAKVQTGVRVVRTANHYRSMSYLAGMSRTLG
QIFAGKKLHSVDRGAIDQSTCLLTHSDLGLLKFRALYEDSAKNAQLTVRE
VFVQQLLQLHSLSLERAMAIVERYPTPRWLLDAYAECADQKQARLLLASI
PCGPLERPLGDKISQCLHEFYSTHFR*

LD03548.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
mus81-PA 426 CG3026-PA 1..426 1..426 2188 100 Plus