Clone LD03564 Report

Search the DGRC for LD03564

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:35
Well:64
Vector:pBS SK-
Associated Gene/Transcripte(r)-RA
Protein status:LD03564.pep: gold
Preliminary Size:1057
Sequenced Size:871

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1871 2001-01-01 Release 2 assignment
CG1871 2002-07-13 Blastp of sequenced clone
CG1871 2003-01-01 Sim4 clustering to Release 3
e(r) 2008-04-29 Release 5.5 accounting
e(r) 2008-08-15 Release 5.9 accounting
e(r) 2008-12-18 5.12 accounting

Clone Sequence Records

LD03564.complete Sequence

871 bp (871 high quality bases) assembled on 2002-07-13

GenBank Submission: BT001470

> LD03564.complete
AAAACCCATAGAACTGGCAAAATAAAAAAAAACGAATCAAGCGCTGATTT
TACCGAATCTCTTTACTGAATCAGCATATTATCATAGTCCATATAGTCCG
GCGTTCGAACGGAGCTGGCGAAGTAAACTTCAACTTCGAGAGTCTCGGAA
TCTTTCGGACTTTGCTATAGAAAAAACGCTTGTTAAAAAAAAGGATATCA
CCATGTCGCACACCATCCTATTGGTACAGCCGGGTGCTCGTCCGGAGACC
CGCACTTACTGTGACTACGAGAGCGTCAACGAGTGCATGGAGGGCGTGTG
CAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCCAAACACTCCGACCA
TTACGTATGACATTAGCCAGCTATTCGATTTCATCGACACAATGGTGGAC
ATTAGCTGCATGGTTTACCAGAAGAGCACCAATACCTATGCGCCCTACAA
TAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCTCCGTCAGGCGGCAT
TTAGTTCCAATACCTAAAGGGACGGCGATGCGACAAGATACATACATATA
AAACCAAATAACACGATGATGCATGCATCAATGCGTGCAACACTAACGAC
AACAACACGTTGATGTATGCAACAATGCGTGCAATAGCAACTACAACAAC
AACAACAATACGAGGATACATGCAACAGCGCTTGGAACAGCATCCGCAAC
GGCCACAACACCATAACACCAATAACACCAACAAGATGAGGAAGAAGAAG
AAGATGATGATGGAGTGGTGGGGCATCGATTCCATTGGAGACTTGCTGCT
ACCGACTAGATCGCCAAATGACAGCAACTTTTTTTTGCAACATAACGCAA
TGCAAAAAAAAAAAAAAAAAA

LD03564.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
e(r)-RA 1066 e(r)-RA 81..939 1..859 4295 100 Plus
e(r).b 1381 e(r).b 81..939 1..859 4295 100 Plus
e(r).c 1297 e(r).c 193..855 197..859 3315 100 Plus
e(r).c 1297 e(r).c 81..193 1..113 565 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8796372..8797027 853..198 3250 99.7 Minus
chrX 22417052 chrX 8797758..8797869 112..1 545 99.1 Minus
chrX 22417052 chrX 8797153..8797237 196..112 410 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8904722..8905384 859..197 3315 100 Minus
X 23542271 X 8906109..8906220 112..1 560 100 Minus
X 23542271 X 8905505..8905589 196..112 425 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8912820..8913482 859..197 3315 100 Minus
X 23527363 X 8914207..8914318 112..1 560 100 Minus
X 23527363 X 8913603..8913687 196..112 425 100 Minus
Blast to na_te.dros performed 2019-03-16 15:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1420..1456 771..735 113 78.4 Minus

LD03564.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:57:57 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8796372..8796490 735..853 100 == Minus
chrX 8796594..8797028 197..631 99 <- Minus
chrX 8797153..8797236 113..196 98 <- Minus
chrX 8797758..8797869 1..112 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:32:58 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RB 1..315 203..517 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:17:29 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RB 1..315 203..517 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:58:30 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RC 1..315 203..517 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:08:41 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RB 1..315 203..517 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:57:28 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RC 1..315 203..517 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:41:53 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RA 25..877 1..853 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:17:29 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RA 25..877 1..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:58:30 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RA 29..881 1..853 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:08:41 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RA 25..877 1..853 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:57:28 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
e(r)-RA 29..881 1..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:57 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
X 8905505..8905588 113..196 100 <- Minus
X 8906109..8906220 1..112 100   Minus
X 8904728..8905384 197..853 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:57 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
X 8905505..8905588 113..196 100 <- Minus
X 8906109..8906220 1..112 100   Minus
X 8904728..8905384 197..853 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:57 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
X 8905505..8905588 113..196 100 <- Minus
X 8906109..8906220 1..112 100   Minus
X 8904728..8905384 197..853 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:58:30 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8798761..8799417 197..853 100 <- Minus
arm_X 8799538..8799621 113..196 100 <- Minus
arm_X 8800142..8800253 1..112 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:40:39 Download gff for LD03564.complete
Subject Subject Range Query Range Percent Splice Strand
X 8912826..8913482 197..853 100 <- Minus
X 8913603..8913686 113..196 100 <- Minus
X 8914207..8914318 1..112 100   Minus

LD03564.pep Sequence

Translation from 202 to 516

> LD03564.pep
MSHTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTI
TYDISQLFDFIDTMVDISCMVYQKSTNTYAPYNKDWIKEKIYVLLRQAAF
SSNT*

LD03564.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19121-PA 104 GF19121-PA 1..103 1..103 540 96.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19018-PA 104 GG19018-PA 1..103 1..103 552 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12071-PA 104 GH12071-PA 1..104 1..104 535 94.2 Plus
Dgri\GH22123-PA 104 GH22123-PA 1..103 1..103 465 82.5 Plus
Dgri\GH11643-PA 102 GH11643-PA 1..100 1..100 365 63 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
e(r)-PE 104 CG1871-PE 1..104 1..104 560 100 Plus
e(r)-PD 104 CG1871-PD 1..104 1..104 560 100 Plus
e(r)-PC 104 CG1871-PC 1..104 1..104 560 100 Plus
e(r)-PB 104 CG1871-PB 1..104 1..104 560 100 Plus
e(r)-PA 104 CG1871-PA 1..104 1..104 560 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15564-PA 104 GI15564-PA 1..104 1..104 544 95.2 Plus
Dmoj\GI17945-PA 102 GI17945-PA 1..101 1..101 376 63.4 Plus
Dmoj\GI21527-PA 104 GI21527-PA 1..94 1..95 220 41.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13030-PA 104 GL13030-PA 1..104 1..104 541 95.2 Plus
Dper\GL16035-PA 102 GL16035-PA 1..102 1..102 425 74.5 Plus
Dper\GL14279-PA 102 GL14279-PA 1..102 1..102 418 73.5 Plus
Dper\GL20777-PA 111 GL20777-PA 6..94 5..93 244 47.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15053-PA 104 GA15053-PA 1..104 1..104 541 95.2 Plus
Dpse\GA25038-PA 102 GA25038-PA 1..102 1..102 418 72.5 Plus
Dpse\GA26111-PA 102 GA26111-PA 1..102 1..102 408 70.6 Plus
Dpse\GA28552-PA 111 GA28552-PA 6..94 5..93 248 46.1 Plus
Dpse\GA28312-PA 116 GA28312-PA 6..96 5..95 244 46.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13693-PA 104 GM13693-PA 1..104 1..104 562 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15793-PA 104 GD15793-PA 1..104 1..104 562 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\e(r)-PA 104 GJ15176-PA 1..104 1..104 544 95.2 Plus
Dvir\GJ17717-PA 103 GJ17717-PA 1..101 1..101 356 63.4 Plus
Dvir\GJ17487-PA 102 GJ17487-PA 1..102 1..103 249 44.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16838-PA 104 GK16838-PA 1..103 1..103 542 96.1 Plus
Dwil\GK15131-PA 103 GK15131-PA 1..101 1..101 348 60.4 Plus
Dwil\GK15494-PA 107 GK15494-PA 6..103 3..99 242 39.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17427-PA 104 GE17427-PA 1..103 1..103 552 98.1 Plus

LD03564.hyp Sequence

Translation from 202 to 516

> LD03564.hyp
MSHTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTI
TYDISQLFDFIDTMVDISCMVYQKSTNTYAPYNKDWIKEKIYVLLRQAAF
SSNT*

LD03564.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
e(r)-PE 104 CG1871-PE 1..104 1..104 560 100 Plus
e(r)-PD 104 CG1871-PD 1..104 1..104 560 100 Plus
e(r)-PC 104 CG1871-PC 1..104 1..104 560 100 Plus
e(r)-PB 104 CG1871-PB 1..104 1..104 560 100 Plus
e(r)-PA 104 CG1871-PA 1..104 1..104 560 100 Plus