Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD03728.complete Sequence
1657 bp (1657 high quality bases) assembled on 2004-11-04
GenBank Submission: BT021420
> LD03728.complete
TAAGTATTTACCATCGTGTCGTTATAGGAAAATTAAAAATTGTGTCATCT
CGGACCAAGATAAATGTTGAAAAGCAAACCAAAGTGAATCATAGTGTCTA
CAATTTGGGCATAAACACATTCGCATATATATATATATATATATATATAT
ATGCATGTGCACACTGATTAGTGCGCAGATATATGAAGAAAACATTGAGA
AAAAAAGAAGCAAAACAATCGGATTCATTGGAAAAGCCATTTGAACGCAA
TCCAATTAAAATTCAAGTGTATTTCAACCGAGCTATGTAGTCGTATTCTA
TTATGTACGATTGTAGTGCAGCCAGCGAATAATCGAATCGAGTTACATCA
AATCCTGGTGGGTATCGCCAACGAAAAATGCTCAATGTTCCATGGAAATA
GCAAAATGGCATTGGCAATTGATTGTGCTGATTACATGCGACCTGGAAAC
TTGCCCATTTCGAATTCGGATGGGCAGTTAAGTCAGTGAATTACTGAATC
ACTTGAAGACACAAAATACAAATACGAACTGCAACCCTCTCGCCATGTCG
GTAACATCTTCGATTGAGAAGCCAACAACCACAGCAAGTGCAATTCAGCA
ACAGTATCAGCATCAGCAGCAGCAACAGCAACAGAAGCCACAACAGCAGC
AACAGCAGGATAAAAGCAGCACCATCGCAATCGCAGCAGCAGCAGGACAG
CAACAAAAGCGCAAATCCCTGAGTTCCAAGCGCTCGTATTCGCTATCCTC
GTCGAGCGCCTCCAGTTCTGGTTCCTTTGGGGCGATAAGGTCTGCGACAT
CGCCACTGGTCACCACCGCCGAGAGGGAGAAAGATAAGGAGAAGAGCTCC
TCCTCGGCCAGCAATAGCCACCATCAACATCATCAGCTTCATCAACACCA
ACATCATCATCAGCAGCAGCAGTCGCAGCAGCAGCAGCAATCCTTTTTGC
CGTACTCATATTGCACCGATACCATAGCAGCAGTACATCATCAACGACAG
TCGTACGCGCTGGTCCAGAAGCCCCCATCGTTGCGCTACCAGGGAAAGCC
CCATCATCAGCTGAGCAACTTCTCGCCCACGATGACCTCCTCGGAACCCT
CATCCCCATTGGCCGCCGATGGTTGCGGATCCGGAATCCTTAGCCCATCG
GAGGTCGCCACCCATTGTTGCGCCAATGTCAAGGCCAATATCACCACCCC
ATTGGCCACCACCACACAGAAAATGCACCGAACAATACCATCTGATAAAA
TTAACCTACGCCTCATTCTTGTTAGTGGTAAAACAAAAGAGTTTATTTTT
AGCCCTTCAGATTCCGCAGGTGATATTGCACAAACAGTATTTGATAATTG
GCCAGAAGATTGGACCCACGAAACTGTGTCGAAAGCCGAAATCTTGCGCT
TAATTTATCAAGGTCGTTTTCTTCATTGCAATGTAACCTTAGGAGCACTG
GGACTTCCATTAGGCAAAACGACTGTTATGCATTTAGTGCCACGTGATAA
TTTGCCAGAGCCCAATTCACAAGATCAAAGACAAAATAGTAAAGGCGGTT
CTGGACGATGCTGTTCGACAAATTGCTCTATTTTGTAACTAAATTATTAT
ATAATAGCGTAATATTTAAACTAATTTGCATTAAAAGAAAAAAAAAAAAA
AAAAAAA
LD03728.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UBL3-RB | 1692 | UBL3-RB | 22..1678 | 1..1657 | 8270 | 99.9 | Plus |
UBL3.c | 2250 | UBL3.c | 22..1678 | 1..1657 | 8270 | 99.9 | Plus |
UBL3-RA | 2233 | UBL3-RA | 105..1667 | 95..1657 | 7800 | 99.9 | Plus |
UBL3-RA | 2233 | UBL3-RA | 22..104 | 1..83 | 415 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 15741426..15742592 | 1249..92 | 5665 | 99.2 | Minus |
chrX | 22417052 | chrX | 15740387..15740553 | 1523..1357 | 835 | 100 | Minus |
chrX | 22417052 | chrX | 15740156..15740271 | 1637..1522 | 580 | 100 | Minus |
chrX | 22417052 | chrX | 15740931..15741039 | 1358..1250 | 545 | 100 | Minus |
chrX | 22417052 | chrX | 15742891..15742984 | 94..1 | 470 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15851585..15852742 | 1249..92 | 5790 | 100 | Minus |
X | 23542271 | X | 15850546..15850712 | 1523..1357 | 835 | 100 | Minus |
X | 23542271 | X | 15850295..15850430 | 1657..1522 | 665 | 99.3 | Minus |
X | 23542271 | X | 15851088..15851196 | 1358..1250 | 545 | 100 | Minus |
X | 23542271 | X | 15853042..15853135 | 94..1 | 470 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 15859683..15860840 | 1249..92 | 5790 | 100 | Minus |
X | 23527363 | X | 15858644..15858810 | 1523..1357 | 835 | 100 | Minus |
X | 23527363 | X | 15858393..15858528 | 1657..1522 | 665 | 99.2 | Minus |
X | 23527363 | X | 15859186..15859294 | 1358..1250 | 545 | 100 | Minus |
X | 23527363 | X | 15861140..15861233 | 94..1 | 470 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 07:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2873 | 509..940 | 161 | 54.9 | Plus |
LD03728.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:36:58 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 15740156..15740269 | 1524..1637 | 100 | <- | Minus |
chrX | 15740387..15740551 | 1359..1523 | 100 | <- | Minus |
chrX | 15740931..15741039 | 1250..1358 | 100 | <- | Minus |
chrX | 15741426..15742589 | 95..1249 | 99 | <- | Minus |
chrX | 15742891..15742984 | 1..94 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:33:30 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RB | 1..1044 | 545..1588 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:28:38 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RC | 1..1044 | 545..1588 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:21 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RA | 1..1044 | 545..1588 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:37 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RB | 1..1044 | 545..1588 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:40 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RA | 1..1044 | 545..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:13 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RB | 22..1609 | 1..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:28:38 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RB | 22..1658 | 1..1637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:21 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RB | 41..1677 | 1..1637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:37 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RB | 22..1609 | 1..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:40 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UBL3-RB | 41..1677 | 1..1637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:58 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15850315..15850428 | 1524..1637 | 100 | <- | Minus |
X | 15850546..15850710 | 1359..1523 | 100 | <- | Minus |
X | 15851088..15851196 | 1250..1358 | 100 | <- | Minus |
X | 15851585..15852739 | 95..1249 | 100 | <- | Minus |
X | 15853042..15853135 | 1..94 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:58 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15850315..15850428 | 1524..1637 | 100 | <- | Minus |
X | 15850546..15850710 | 1359..1523 | 100 | <- | Minus |
X | 15851088..15851196 | 1250..1358 | 100 | <- | Minus |
X | 15851585..15852739 | 95..1249 | 100 | <- | Minus |
X | 15853042..15853135 | 1..94 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:58 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15850315..15850428 | 1524..1637 | 100 | <- | Minus |
X | 15850546..15850710 | 1359..1523 | 100 | <- | Minus |
X | 15851088..15851196 | 1250..1358 | 100 | <- | Minus |
X | 15851585..15852739 | 95..1249 | 100 | <- | Minus |
X | 15853042..15853135 | 1..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:21 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15744579..15744743 | 1359..1523 | 100 | <- | Minus |
arm_X | 15745121..15745229 | 1250..1358 | 100 | <- | Minus |
arm_X | 15744348..15744461 | 1524..1637 | 100 | <- | Minus |
arm_X | 15745618..15746772 | 95..1249 | 100 | <- | Minus |
arm_X | 15747075..15747168 | 1..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:14 Download gff for
LD03728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15859683..15860837 | 95..1249 | 100 | <- | Minus |
X | 15861140..15861233 | 1..94 | 100 | | Minus |
X | 15858413..15858526 | 1524..1637 | 100 | <- | Minus |
X | 15858644..15858808 | 1359..1523 | 100 | <- | Minus |
X | 15859186..15859294 | 1250..1358 | 100 | <- | Minus |
LD03728.pep Sequence
Translation from 544 to 1587
> LD03728.pep
MSVTSSIEKPTTTASAIQQQYQHQQQQQQQKPQQQQQQDKSSTIAIAAAA
GQQQKRKSLSSKRSYSLSSSSASSSGSFGAIRSATSPLVTTAEREKDKEK
SSSSASNSHHQHHQLHQHQHHHQQQQSQQQQQSFLPYSYCTDTIAAVHHQ
RQSYALVQKPPSLRYQGKPHHQLSNFSPTMTSSEPSSPLAADGCGSGILS
PSEVATHCCANVKANITTPLATTTQKMHRTIPSDKINLRLILVSGKTKEF
IFSPSDSAGDIAQTVFDNWPEDWTHETVSKAEILRLIYQGRFLHCNVTLG
ALGLPLGKTTVMHLVPRDNLPEPNSQDQRQNSKGGSGRCCSTNCSIL*
LD03728.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19365-PA | 333 | GG19365-PA | 1..333 | 1..347 | 1332 | 90.2 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH12550-PA | 289 | GH12550-PA | 98..289 | 145..347 | 648 | 65.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UBL3-PC | 347 | CG9038-PC | 1..347 | 1..347 | 1804 | 100 | Plus |
UBL3-PB | 347 | CG9038-PB | 1..347 | 1..347 | 1804 | 100 | Plus |
UBL3-PA | 347 | CG9038-PA | 1..347 | 1..347 | 1804 | 100 | Plus |
org-1-PB | 699 | CG11202-PB | 397..608 | 2..221 | 175 | 29.9 | Plus |
org-1-PA | 699 | CG11202-PA | 397..608 | 2..221 | 175 | 29.9 | Plus |
Taf4-PH | 1047 | CG5444-PH | 185..312 | 2..133 | 164 | 35 | Plus |
Taf4-PE | 1088 | CG5444-PE | 226..353 | 2..133 | 164 | 35 | Plus |
Smr-PG | 3607 | CG4013-PG | 71..279 | 8..191 | 163 | 30.2 | Plus |
Smr-PF | 3601 | CG4013-PF | 71..273 | 8..191 | 155 | 27.8 | Plus |
Smr-PE | 3601 | CG4013-PE | 71..273 | 8..191 | 155 | 27.8 | Plus |
Smr-PD | 3601 | CG4013-PD | 71..273 | 8..191 | 155 | 27.8 | Plus |
SoxN-PB | 761 | CG18024-PB | 601..730 | 24..136 | 154 | 34.6 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL20972-PA | 149 | GL20972-PA | 26..65 | 231..270 | 201 | 90 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22519-PA | 350 | GM22519-PA | 1..350 | 1..347 | 1732 | 95.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24675-PA | 349 | GD24675-PA | 1..349 | 1..347 | 1744 | 96.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE16013-PA | 342 | GE16013-PA | 1..342 | 1..347 | 1188 | 84 | Plus |
LD03728.hyp Sequence
Translation from 544 to 1587
> LD03728.hyp
MSVTSSIEKPTTTASAIQQQYQHQQQQQQQKPQQQQQQDKSSTIAIAAAA
GQQQKRKSLSSKRSYSLSSSSASSSGSFGAIRSATSPLVTTAEREKDKEK
SSSSASNSHHQHHQLHQHQHHHQQQQSQQQQQSFLPYSYCTDTIAAVHHQ
RQSYALVQKPPSLRYQGKPHHQLSNFSPTMTSSEPSSPLAADGCGSGILS
PSEVATHCCANVKANITTPLATTTQKMHRTIPSDKINLRLILVSGKTKEF
IFSPSDSAGDIAQTVFDNWPEDWTHETVSKAEILRLIYQGRFLHCNVTLG
ALGLPLGKTTVMHLVPRDNLPEPNSQDQRQNSKGGSGRCCSTNCSIL*
LD03728.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UBL3-PC | 347 | CG9038-PC | 1..347 | 1..347 | 1804 | 100 | Plus |
UBL3-PB | 347 | CG9038-PB | 1..347 | 1..347 | 1804 | 100 | Plus |
UBL3-PA | 347 | CG9038-PA | 1..347 | 1..347 | 1804 | 100 | Plus |
org-1-PB | 699 | CG11202-PB | 397..608 | 2..221 | 175 | 29.9 | Plus |
org-1-PA | 699 | CG11202-PA | 397..608 | 2..221 | 175 | 29.9 | Plus |