Clone LD03728 Report

Search the DGRC for LD03728

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:37
Well:28
Vector:pBS SK-
Associated Gene/TranscriptUBL3-RA
Protein status:LD03728.pep: gold
Sequenced Size:1657

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9038 2003-01-01 Sim4 clustering to Release 3
UBL3 2008-04-29 Release 5.5 accounting
UBL3 2008-08-15 Release 5.9 accounting
UBL3 2008-12-18 5.12 accounting

Clone Sequence Records

LD03728.complete Sequence

1657 bp (1657 high quality bases) assembled on 2004-11-04

GenBank Submission: BT021420

> LD03728.complete
TAAGTATTTACCATCGTGTCGTTATAGGAAAATTAAAAATTGTGTCATCT
CGGACCAAGATAAATGTTGAAAAGCAAACCAAAGTGAATCATAGTGTCTA
CAATTTGGGCATAAACACATTCGCATATATATATATATATATATATATAT
ATGCATGTGCACACTGATTAGTGCGCAGATATATGAAGAAAACATTGAGA
AAAAAAGAAGCAAAACAATCGGATTCATTGGAAAAGCCATTTGAACGCAA
TCCAATTAAAATTCAAGTGTATTTCAACCGAGCTATGTAGTCGTATTCTA
TTATGTACGATTGTAGTGCAGCCAGCGAATAATCGAATCGAGTTACATCA
AATCCTGGTGGGTATCGCCAACGAAAAATGCTCAATGTTCCATGGAAATA
GCAAAATGGCATTGGCAATTGATTGTGCTGATTACATGCGACCTGGAAAC
TTGCCCATTTCGAATTCGGATGGGCAGTTAAGTCAGTGAATTACTGAATC
ACTTGAAGACACAAAATACAAATACGAACTGCAACCCTCTCGCCATGTCG
GTAACATCTTCGATTGAGAAGCCAACAACCACAGCAAGTGCAATTCAGCA
ACAGTATCAGCATCAGCAGCAGCAACAGCAACAGAAGCCACAACAGCAGC
AACAGCAGGATAAAAGCAGCACCATCGCAATCGCAGCAGCAGCAGGACAG
CAACAAAAGCGCAAATCCCTGAGTTCCAAGCGCTCGTATTCGCTATCCTC
GTCGAGCGCCTCCAGTTCTGGTTCCTTTGGGGCGATAAGGTCTGCGACAT
CGCCACTGGTCACCACCGCCGAGAGGGAGAAAGATAAGGAGAAGAGCTCC
TCCTCGGCCAGCAATAGCCACCATCAACATCATCAGCTTCATCAACACCA
ACATCATCATCAGCAGCAGCAGTCGCAGCAGCAGCAGCAATCCTTTTTGC
CGTACTCATATTGCACCGATACCATAGCAGCAGTACATCATCAACGACAG
TCGTACGCGCTGGTCCAGAAGCCCCCATCGTTGCGCTACCAGGGAAAGCC
CCATCATCAGCTGAGCAACTTCTCGCCCACGATGACCTCCTCGGAACCCT
CATCCCCATTGGCCGCCGATGGTTGCGGATCCGGAATCCTTAGCCCATCG
GAGGTCGCCACCCATTGTTGCGCCAATGTCAAGGCCAATATCACCACCCC
ATTGGCCACCACCACACAGAAAATGCACCGAACAATACCATCTGATAAAA
TTAACCTACGCCTCATTCTTGTTAGTGGTAAAACAAAAGAGTTTATTTTT
AGCCCTTCAGATTCCGCAGGTGATATTGCACAAACAGTATTTGATAATTG
GCCAGAAGATTGGACCCACGAAACTGTGTCGAAAGCCGAAATCTTGCGCT
TAATTTATCAAGGTCGTTTTCTTCATTGCAATGTAACCTTAGGAGCACTG
GGACTTCCATTAGGCAAAACGACTGTTATGCATTTAGTGCCACGTGATAA
TTTGCCAGAGCCCAATTCACAAGATCAAAGACAAAATAGTAAAGGCGGTT
CTGGACGATGCTGTTCGACAAATTGCTCTATTTTGTAACTAAATTATTAT
ATAATAGCGTAATATTTAAACTAATTTGCATTAAAAGAAAAAAAAAAAAA
AAAAAAA

LD03728.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
UBL3-RB 1692 UBL3-RB 22..1678 1..1657 8270 99.9 Plus
UBL3.c 2250 UBL3.c 22..1678 1..1657 8270 99.9 Plus
UBL3-RA 2233 UBL3-RA 105..1667 95..1657 7800 99.9 Plus
UBL3-RA 2233 UBL3-RA 22..104 1..83 415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15741426..15742592 1249..92 5665 99.2 Minus
chrX 22417052 chrX 15740387..15740553 1523..1357 835 100 Minus
chrX 22417052 chrX 15740156..15740271 1637..1522 580 100 Minus
chrX 22417052 chrX 15740931..15741039 1358..1250 545 100 Minus
chrX 22417052 chrX 15742891..15742984 94..1 470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15851585..15852742 1249..92 5790 100 Minus
X 23542271 X 15850546..15850712 1523..1357 835 100 Minus
X 23542271 X 15850295..15850430 1657..1522 665 99.3 Minus
X 23542271 X 15851088..15851196 1358..1250 545 100 Minus
X 23542271 X 15853042..15853135 94..1 470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15859683..15860840 1249..92 5790 100 Minus
X 23527363 X 15858644..15858810 1523..1357 835 100 Minus
X 23527363 X 15858393..15858528 1657..1522 665 99.2 Minus
X 23527363 X 15859186..15859294 1358..1250 545 100 Minus
X 23527363 X 15861140..15861233 94..1 470 100 Minus
Blast to na_te.dros performed 2019-03-16 07:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2420..2873 509..940 161 54.9 Plus

LD03728.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:36:58 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15740156..15740269 1524..1637 100 <- Minus
chrX 15740387..15740551 1359..1523 100 <- Minus
chrX 15740931..15741039 1250..1358 100 <- Minus
chrX 15741426..15742589 95..1249 99 <- Minus
chrX 15742891..15742984 1..94 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:33:30 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RB 1..1044 545..1588 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:28:38 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RC 1..1044 545..1588 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:21 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RA 1..1044 545..1588 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:37 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RB 1..1044 545..1588 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:40 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RA 1..1044 545..1588 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:13 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RB 22..1609 1..1588 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:28:38 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RB 22..1658 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:21 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RB 41..1677 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:37 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RB 22..1609 1..1588 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:40 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
UBL3-RB 41..1677 1..1637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:58 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
X 15850315..15850428 1524..1637 100 <- Minus
X 15850546..15850710 1359..1523 100 <- Minus
X 15851088..15851196 1250..1358 100 <- Minus
X 15851585..15852739 95..1249 100 <- Minus
X 15853042..15853135 1..94 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:58 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
X 15850315..15850428 1524..1637 100 <- Minus
X 15850546..15850710 1359..1523 100 <- Minus
X 15851088..15851196 1250..1358 100 <- Minus
X 15851585..15852739 95..1249 100 <- Minus
X 15853042..15853135 1..94 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:58 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
X 15850315..15850428 1524..1637 100 <- Minus
X 15850546..15850710 1359..1523 100 <- Minus
X 15851088..15851196 1250..1358 100 <- Minus
X 15851585..15852739 95..1249 100 <- Minus
X 15853042..15853135 1..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:21 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15744579..15744743 1359..1523 100 <- Minus
arm_X 15745121..15745229 1250..1358 100 <- Minus
arm_X 15744348..15744461 1524..1637 100 <- Minus
arm_X 15745618..15746772 95..1249 100 <- Minus
arm_X 15747075..15747168 1..94 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:14 Download gff for LD03728.complete
Subject Subject Range Query Range Percent Splice Strand
X 15859683..15860837 95..1249 100 <- Minus
X 15861140..15861233 1..94 100   Minus
X 15858413..15858526 1524..1637 100 <- Minus
X 15858644..15858808 1359..1523 100 <- Minus
X 15859186..15859294 1250..1358 100 <- Minus

LD03728.pep Sequence

Translation from 544 to 1587

> LD03728.pep
MSVTSSIEKPTTTASAIQQQYQHQQQQQQQKPQQQQQQDKSSTIAIAAAA
GQQQKRKSLSSKRSYSLSSSSASSSGSFGAIRSATSPLVTTAEREKDKEK
SSSSASNSHHQHHQLHQHQHHHQQQQSQQQQQSFLPYSYCTDTIAAVHHQ
RQSYALVQKPPSLRYQGKPHHQLSNFSPTMTSSEPSSPLAADGCGSGILS
PSEVATHCCANVKANITTPLATTTQKMHRTIPSDKINLRLILVSGKTKEF
IFSPSDSAGDIAQTVFDNWPEDWTHETVSKAEILRLIYQGRFLHCNVTLG
ALGLPLGKTTVMHLVPRDNLPEPNSQDQRQNSKGGSGRCCSTNCSIL*

LD03728.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19365-PA 333 GG19365-PA 1..333 1..347 1332 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12550-PA 289 GH12550-PA 98..289 145..347 648 65.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
UBL3-PC 347 CG9038-PC 1..347 1..347 1804 100 Plus
UBL3-PB 347 CG9038-PB 1..347 1..347 1804 100 Plus
UBL3-PA 347 CG9038-PA 1..347 1..347 1804 100 Plus
org-1-PB 699 CG11202-PB 397..608 2..221 175 29.9 Plus
org-1-PA 699 CG11202-PA 397..608 2..221 175 29.9 Plus
Taf4-PH 1047 CG5444-PH 185..312 2..133 164 35 Plus
Taf4-PE 1088 CG5444-PE 226..353 2..133 164 35 Plus
Smr-PG 3607 CG4013-PG 71..279 8..191 163 30.2 Plus
Smr-PF 3601 CG4013-PF 71..273 8..191 155 27.8 Plus
Smr-PE 3601 CG4013-PE 71..273 8..191 155 27.8 Plus
Smr-PD 3601 CG4013-PD 71..273 8..191 155 27.8 Plus
SoxN-PB 761 CG18024-PB 601..730 24..136 154 34.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20972-PA 149 GL20972-PA 26..65 231..270 201 90 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22519-PA 350 GM22519-PA 1..350 1..347 1732 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24675-PA 349 GD24675-PA 1..349 1..347 1744 96.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16013-PA 342 GE16013-PA 1..342 1..347 1188 84 Plus

LD03728.hyp Sequence

Translation from 544 to 1587

> LD03728.hyp
MSVTSSIEKPTTTASAIQQQYQHQQQQQQQKPQQQQQQDKSSTIAIAAAA
GQQQKRKSLSSKRSYSLSSSSASSSGSFGAIRSATSPLVTTAEREKDKEK
SSSSASNSHHQHHQLHQHQHHHQQQQSQQQQQSFLPYSYCTDTIAAVHHQ
RQSYALVQKPPSLRYQGKPHHQLSNFSPTMTSSEPSSPLAADGCGSGILS
PSEVATHCCANVKANITTPLATTTQKMHRTIPSDKINLRLILVSGKTKEF
IFSPSDSAGDIAQTVFDNWPEDWTHETVSKAEILRLIYQGRFLHCNVTLG
ALGLPLGKTTVMHLVPRDNLPEPNSQDQRQNSKGGSGRCCSTNCSIL*

LD03728.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
UBL3-PC 347 CG9038-PC 1..347 1..347 1804 100 Plus
UBL3-PB 347 CG9038-PB 1..347 1..347 1804 100 Plus
UBL3-PA 347 CG9038-PA 1..347 1..347 1804 100 Plus
org-1-PB 699 CG11202-PB 397..608 2..221 175 29.9 Plus
org-1-PA 699 CG11202-PA 397..608 2..221 175 29.9 Plus