Clone LD03819 Report

Search the DGRC for LD03819

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:38
Well:19
Vector:pBS SK-
Associated Gene/TranscriptCG1971-RA
Protein status:LD03819.pep: gold
Preliminary Size:1404
Sequenced Size:1163

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1971 2001-01-01 Release 2 assignment
CG1971 2001-11-09 Blastp of sequenced clone
CG1971 2003-01-01 Sim4 clustering to Release 3
CG1971 2008-04-29 Release 5.5 accounting
CG1971 2008-08-15 Release 5.9 accounting
CG1971 2008-12-18 5.12 accounting

Clone Sequence Records

LD03819.complete Sequence

1163 bp (1163 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069322

> LD03819.complete
CTTTTTCAAATCATTTTACCTTAGAGATTTACATTGGCATAAGATTGAAT
TAAAGTCACGGTTTGTCACCAGTTTTCAAAATTTATAGTGATTTTTGGGA
TCCCTAGTGGACTGAAGCGTTTAACAATGGCCGACAATAATTCAGCATCA
GAGAGCGAAAATATAATTCCTGTCTTTCTAAGTAATTTCGATGAAAAGGA
GCAGGTGCGTCAACTCAGCTTATACCTTCACAACCTGCAAGACCGTTTGC
GGCAGGGCATTCAGGAGCACCAGAAGGTAATGCAGTCGTCGGTGCAGTTG
CTCAAGGAGGTGGGCGATGTGAACGACATGATGCAGCTCGCGAGGTGTGG
CCACCGCGCCGGGGCCTCCAAGATACAGCGACTGATCGTGGGTTTCGAGA
CGGTTAATGCTGTGAACGCCCCGCAAACCTCCGCCGTGGCGGGCATGAGT
TTGCCTTCTGACCTCACCGAGATTCAAGGTCTATTGGTGGAATTTGAGCA
CCTCAATGAAAGCCAAGTTCTGCGGGAGAGCCAGGAGAACTTCAAACGTG
CCCGAGACTCACTGGAGAAGGTTCTCGGCTTTCTAGAGAAGATTGGCAGC
GAATCTTCACGGCCGTCTCCACAAGGAAGTCAGCTCTTTGGGTGTCCCAG
TGCCAGCCGCAGCCTGCGCGAGAAGATCGAAGCATTCAACAAGGTCTTAG
AGGCGGCCCCCGAGAAACTTGGGGATACCTGCCGTCATTTTAAGGAGTGC
TTTTGTAGCTGCTGCACCTTGGACGAGTCCTTCCTGTCTAAAGGGCACAA
TCCCCTTCCCGTTGCCTCGAAAACAAATTCGGGCTACGAGGGGGACATAG
ACAGCGAGGTAGAGCAGCCGGAGCGGTCCAATAACGAATCGGGGGCGGAT
ATAAGGGCCGATCGGTAAAAAATTGATATTGGTAAAGAGCAAGCTTTAAA
CACAATTAATACAAATTAGTTGCATTTAGGAGTATCTTTTCAATGCCTAG
TAAGAATTTAAAGGACGATTATAGAAAAAATAAATTTTAGTTGGTATAAG
AAAGATGTAAATCCGTCAAAACTACATATTAAACTTTAAATAATATACAG
GCAAAGGCACTATAATAATACCTCTTCAAATTAATATTTAAATACAAAAA
AAAAAAAAAAAAA

LD03819.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1250 CG1971-RA 101..1250 1..1150 5735 99.9 Plus
CG1971-RB 1076 CG1971-RB 103..1076 172..1145 4870 100 Plus
CG1971.b 1016 CG1971.b 66..1016 195..1145 4755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27628124..27629097 172..1145 4855 99.9 Plus
chr3R 27901430 chr3R 27627826..27627997 1..172 860 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806745 172..1151 4885 99.9 Plus
3R 32079331 3R 31805468..31805639 1..172 860 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31546597..31547576 172..1151 4885 99.8 Plus
3R 31820162 3R 31546299..31546470 1..172 860 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:39:03 has no hits.

LD03819.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:40:09 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27627826..27627997 1..172 100 -> Plus
chr3R 27628125..27629097 173..1145 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:33:40 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..792 127..918 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:39 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..792 127..918 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:37 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..792 127..918 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:17 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..792 127..918 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:08 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..792 127..918 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:43 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..1145 1..1145 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:38 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..1145 1..1145 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:37 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..1145 1..1145 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:18 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..1145 1..1145 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:08 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 1..1145 1..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:40:09 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805468..31805639 1..172 100 -> Plus
3R 31805767..31806739 173..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:40:09 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805468..31805639 1..172 100 -> Plus
3R 31805767..31806739 173..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:40:09 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31805468..31805639 1..172 100 -> Plus
3R 31805767..31806739 173..1145 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:37 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631190..27631361 1..172 100 -> Plus
arm_3R 27631489..27632461 173..1145 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:40 Download gff for LD03819.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31546598..31547570 173..1145 100   Plus
3R 31546299..31546470 1..172 100 -> Plus

LD03819.hyp Sequence

Translation from 126 to 917

> LD03819.hyp
MADNNSASESENIIPVFLSNFDEKEQVRQLSLYLHNLQDRLRQGIQEHQK
VMQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQ
TSAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVL
GFLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGD
TCRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPER
SNNESGADIRADR*

LD03819.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 263 CG1971-PA 1..263 1..263 1341 100 Plus
CG1971-PD 212 CG1971-PD 1..212 52..263 1084 100 Plus
CG1971-PC 212 CG1971-PC 1..212 52..263 1084 100 Plus
CG1971-PB 212 CG1971-PB 1..212 52..263 1084 100 Plus

LD03819.pep Sequence

Translation from 126 to 917

> LD03819.pep
MADNNSASESENIIPVFLSNFDEKEQVRQLSLYLHNLQDRLRQGIQEHQK
VMQSSVQLLKEVGDVNDMMQLARCGHRAGASKIQRLIVGFETVNAVNAPQ
TSAVAGMSLPSDLTEIQGLLVEFEHLNESQVLRESQENFKRARDSLEKVL
GFLEKIGSESSRPSPQGSQLFGCPSASRSLREKIEAFNKVLEAAPEKLGD
TCRHFKECFCSCCTLDESFLSKGHNPLPVASKTNSGYEGDIDSEVEQPER
SNNESGADIRADR*

LD03819.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17491-PA 265 GF17491-PA 12..245 11..246 731 61.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11835-PA 259 GG11835-PA 1..258 1..258 1067 79.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13761-PA 243 GH13761-PA 11..239 15..252 329 37.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 263 CG1971-PA 1..263 1..263 1341 100 Plus
CG1971-PD 212 CG1971-PD 1..212 52..263 1084 100 Plus
CG1971-PC 212 CG1971-PC 1..212 52..263 1084 100 Plus
CG1971-PB 212 CG1971-PB 1..212 52..263 1084 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\Tes130-PA 184 GI24815-PA 1..174 62..246 220 35.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24027-PA 286 GL24027-PA 22..282 11..249 313 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15163-PA 287 GA15163-PA 22..281 11..247 318 35.7 Plus
Dpse\GA15163-PB 250 GA15163-PB 6..246 33..249 296 35.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16456-PA 237 GM16456-PA 1..236 1..258 1053 80.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21607-PA 263 GD21607-PA 1..263 1..263 1250 90.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24459-PA 251 GJ24459-PA 20..238 25..249 392 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12159-PA 258 GK12159-PA 14..248 2..249 485 44.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10969-PA 255 GE10969-PA 1..249 1..249 1070 83.1 Plus