![]() | BDGP Sequence Production Resources |
Search the DGRC for LD03829
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 38 |
Well: | 29 |
Vector: | pBS SK- |
Associated Gene/Transcript | homer-RA |
Protein status: | LD03829.pep: gold |
Preliminary Size: | 1986 |
Sequenced Size: | 1922 |
Gene | Date | Evidence |
---|---|---|
CG11324 | 2001-01-01 | Release 2 assignment |
CG11324 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11324 | 2003-02-28 | Blastp of sequenced clone |
homer | 2008-04-29 | Release 5.5 accounting |
homer | 2008-08-15 | Release 5.9 accounting |
homer | 2008-12-18 | 5.12 accounting |
1922 bp (1922 high quality bases) assembled on 2003-02-28
GenBank Submission: BT004910
> LD03829.complete CACCATACAAACATCGATTTTGGTTCCAGCTCTAGACATTTGTGTTTTAT TTTTTTTAACCGTGAAATTCATAAGTAAAACCGACTAGCATTGGTATAAA CTGCTGCGGAAGCACTCAGTCAGCGCCAAAGAACGAATACAATGGGCGAA CAACCGATTTTCACCTGCCAGGCGCACGTCTTCCACATCGATCCGAAGAC GAAGCGCACCTGGATCACGGCCAGCATGAAGGCGGTCAACGTTAGCTTCT TCTACGACAGCTCGCGAAATCTGTACCGCATCATCAGTGTCGAGGGCACC AAGGCGGTGATAAACTCGACGATCACACCCAACATGACCTTCACCCAGAC CTCCCAGAAGTTCGGCCAGTGGAGCGATGTGCGGGCAAACACGGTGTACG GCTTGGGATTTGCCTCAGAGGCGGAATTGACCAAGTTCGTAGAGAAGTTC CAGGAGGTCAAGGAGGCCACCAAGAATGCCATGAAATCGGCCAACGGATC GAATGCCGTCACGCCCACCACCTCGGCGAACACGTCGCCCATTTCCGGGA GAGCTGTGGGCTCCATGCAGAACGACAACACAGCCATCGATCCGCACACT GTGGAGCCGCCCAACATGAGCAACACGAATACCCAGAACGCCAATCCGGA CAGTCCTTCCCACAAGCTTCTAAATACCAGCGATGTCAAGGCGGACATCG GATCGGCCACGCCCTCGCCGCAGCCCACTTCAGGGGTAACTGGTGGCGGT GGAGTGACCATCTCGTCTGGCGGAAGCATTGTGGGCATGCACACGGGTCC TGGAGCCGGCGCCACCGCCGAGCAGCAGCTTAAGTACGAGAACGAGCGTC TGAAAATGGCACTGGCACAAAGCTGCGCCAATGCCAAGAAATGGGAAATC GAGCTGGCTACCTTGAAGAACAACAATATACGGCTGACTAGTGCTCTTCA GGAATCAACTGCCAATGTAGACGAATGGAAGCGCCAGCTGCACACTTACA AGGAGGAGAATATTCGCCTCAAACGAGATATGGAGCAGCTGTGCGTGGGC GGCGGGGTTGTGGCTGCAGCCGGAGGAGGCGCCACAGAGGACGAACTGCG TCGTGAGGTGGCCACGCTCAAGGCGCGGACAGAACAACTACAGAAGGAAC TTATGCAACAGGAACTTGAGCTTAAGTCGGCCAATATTAGCCTACGTGAA AAGTCCAATGACCAAACGCTTGCAAAGTTGAGTGAGGTGAATGGTGTGTT TGCCAAGCATCTTTCGGAGTTGTATGGGGTGCAGAAGGATATGGAGAGTC TTATACAAATTGCCAAGTGCACTTGAGACACAGAGTTGGCGTTTATGCGA AAGGTTTCAGTGCAGGAACAGACTACAATGATTAATACTACAACGACATC ATCGACAACAACAGGAAGCACGACAAGTAAACGTTATTTAAGCAACTTTC CAACCGCAGAGGCCGAGAGCACGCTCTCCAACGTCACCTCGATACACACT CAGCTGCAGTCGTCGCTTTACGAGACTCAGAACATGCCGCAGCTGAAGGC CTTGGACAAGCATTCGGCTTTGCTCCAAGAGCTTCATCAGCGGCAGGCGG CACCCAGGCGCAACTCAGCCTCTGCGGAAGCTGCTGCAGCCGGCTCTGGT GGAGCCAAAACAGCCACCATACTCGTTTCCAAATCAAAAACCAAAACTGG GCTGCCCCTGTTGCTGAAGAATTCCATTAACAATTAGAGAAATCCCAAAA AGAAAAACAAATATCGCAGGTAGAGAGAATTTATTCAGTGGCATTTTTGT AATCTTTATATTGGTAGTTTGTATACAAGGACAACGTTAAGAGTCAGCCA TGGTACTTCCCCAATCCCCACGCACCCCCTCTTTTTGTTAACATTATTGG AAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6719448..6719996 | 1900..1352 | 2730 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 6720702..6721140 | 872..434 | 2195 | 100 | Minus |
chr2L | 23010047 | chr2L | 6721194..6721483 | 435..146 | 1450 | 100 | Minus |
chr2L | 23010047 | chr2L | 6720240..6720508 | 1218..950 | 1330 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 6722244..6722389 | 146..1 | 730 | 100 | Minus |
chr2L | 23010047 | chr2L | 6720045..6720184 | 1357..1218 | 700 | 100 | Minus |
chr2L | 23010047 | chr2L | 6720569..6720650 | 952..871 | 410 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6720395..6720944 | 1901..1352 | 2750 | 100 | Minus |
2L | 23513712 | 2L | 6721650..6722088 | 872..434 | 2195 | 100 | Minus |
2L | 23513712 | 2L | 6722142..6722431 | 435..146 | 1450 | 100 | Minus |
2L | 23513712 | 2L | 6721188..6721456 | 1218..950 | 1345 | 100 | Minus |
2L | 23513712 | 2L | 6723193..6723338 | 146..1 | 730 | 100 | Minus |
2L | 23513712 | 2L | 6720993..6721132 | 1357..1218 | 700 | 100 | Minus |
2L | 23513712 | 2L | 6721517..6721598 | 952..871 | 410 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6720395..6720944 | 1901..1352 | 2750 | 100 | Minus |
2L | 23513712 | 2L | 6721650..6722088 | 872..434 | 2195 | 100 | Minus |
2L | 23513712 | 2L | 6722142..6722431 | 435..146 | 1450 | 100 | Minus |
2L | 23513712 | 2L | 6721188..6721456 | 1218..950 | 1345 | 100 | Minus |
2L | 23513712 | 2L | 6723193..6723338 | 146..1 | 730 | 100 | Minus |
2L | 23513712 | 2L | 6720993..6721132 | 1357..1218 | 700 | 100 | Minus |
2L | 23513712 | 2L | 6721517..6721598 | 952..871 | 410 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TAHRE | 10463 | TAHRE OSV 10463bp | 8651..8724 | 1709..1785 | 135 | 67.9 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1438..1484 | 1717..1763 | 118 | 72.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6720240..6720506 | 952..1218 | 99 | <- | Minus |
chr2L | 6720570..6720648 | 873..951 | 100 | <- | Minus |
chr2L | 6720049..6720183 | 1219..1353 | 100 | <- | Minus |
chr2L | 6719448..6719994 | 1354..1900 | 99 | <- | Minus |
chr2L | 6720702..6721138 | 436..872 | 100 | <- | Minus |
chr2L | 6721194..6721482 | 147..435 | 100 | <- | Minus |
chr2L | 6722244..6722389 | 1..146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RA | 1..1185 | 142..1326 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RA | 1..1185 | 142..1326 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RE | 1..1596 | 142..1737 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RA | 1..1185 | 142..1326 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RE | 1..1596 | 142..1737 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RA | 18..1917 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RA | 18..1917 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RA | 22..1921 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RA | 18..1917 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
homer-RA | 22..1921 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6720396..6720942 | 1354..1900 | 100 | <- | Minus |
2L | 6720997..6721131 | 1219..1353 | 100 | <- | Minus |
2L | 6721188..6721454 | 952..1218 | 100 | <- | Minus |
2L | 6721518..6721596 | 873..951 | 100 | <- | Minus |
2L | 6721650..6722086 | 436..872 | 100 | <- | Minus |
2L | 6722142..6722430 | 147..435 | 100 | <- | Minus |
2L | 6723193..6723338 | 1..146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6720396..6720942 | 1354..1900 | 100 | <- | Minus |
2L | 6720997..6721131 | 1219..1353 | 100 | <- | Minus |
2L | 6721188..6721454 | 952..1218 | 100 | <- | Minus |
2L | 6721518..6721596 | 873..951 | 100 | <- | Minus |
2L | 6721650..6722086 | 436..872 | 100 | <- | Minus |
2L | 6722142..6722430 | 147..435 | 100 | <- | Minus |
2L | 6723193..6723338 | 1..146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6720396..6720942 | 1354..1900 | 100 | <- | Minus |
2L | 6720997..6721131 | 1219..1353 | 100 | <- | Minus |
2L | 6721188..6721454 | 952..1218 | 100 | <- | Minus |
2L | 6721518..6721596 | 873..951 | 100 | <- | Minus |
2L | 6721650..6722086 | 436..872 | 100 | <- | Minus |
2L | 6722142..6722430 | 147..435 | 100 | <- | Minus |
2L | 6723193..6723338 | 1..146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6723193..6723338 | 1..146 | 100 | Minus | |
arm_2L | 6722142..6722430 | 147..435 | 100 | <- | Minus |
arm_2L | 6720396..6720942 | 1354..1900 | 100 | <- | Minus |
arm_2L | 6720997..6721131 | 1219..1353 | 100 | <- | Minus |
arm_2L | 6721188..6721454 | 952..1218 | 100 | <- | Minus |
arm_2L | 6721518..6721596 | 873..951 | 100 | <- | Minus |
arm_2L | 6721650..6722086 | 436..872 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6720396..6720942 | 1354..1900 | 100 | <- | Minus |
2L | 6720997..6721131 | 1219..1353 | 100 | <- | Minus |
2L | 6721188..6721454 | 952..1218 | 100 | <- | Minus |
2L | 6721518..6721596 | 873..951 | 100 | <- | Minus |
2L | 6721650..6722086 | 436..872 | 100 | <- | Minus |
2L | 6722142..6722430 | 147..435 | 100 | <- | Minus |
2L | 6723193..6723338 | 1..146 | 100 | Minus |
Translation from 141 to 1325
> LD03829.hyp MGEQPIFTCQAHVFHIDPKTKRTWITASMKAVNVSFFYDSSRNLYRIISV EGTKAVINSTITPNMTFTQTSQKFGQWSDVRANTVYGLGFASEAELTKFV EKFQEVKEATKNAMKSANGSNAVTPTTSANTSPISGRAVGSMQNDNTAID PHTVEPPNMSNTNTQNANPDSPSHKLLNTSDVKADIGSATPSPQPTSGVT GGGGVTISSGGSIVGMHTGPGAGATAEQQLKYENERLKMALAQSCANAKK WEIELATLKNNNIRLTSALQESTANVDEWKRQLHTYKEENIRLKRDMEQL CVGGGVVAAAGGGATEDELRREVATLKARTEQLQKELMQQELELKSANIS LREKSNDQTLAKLSEVNGVFAKHLSELYGVQKDMESLIQIAKCT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
homer-PD | 394 | CG11324-PD | 1..394 | 1..394 | 2009 | 100 | Plus |
homer-PA | 394 | CG11324-PA | 1..394 | 1..394 | 2009 | 100 | Plus |
homer-PF | 397 | CG11324-PF | 4..397 | 1..394 | 2000 | 99.5 | Plus |
homer-PG | 400 | CG11324-PG | 7..400 | 1..394 | 2000 | 99.5 | Plus |
homer-PB | 397 | CG11324-PB | 6..397 | 3..394 | 1998 | 100 | Plus |
Translation from 141 to 1325
> LD03829.pep MGEQPIFTCQAHVFHIDPKTKRTWITASMKAVNVSFFYDSSRNLYRIISV EGTKAVINSTITPNMTFTQTSQKFGQWSDVRANTVYGLGFASEAELTKFV EKFQEVKEATKNAMKSANGSNAVTPTTSANTSPISGRAVGSMQNDNTAID PHTVEPPNMSNTNTQNANPDSPSHKLLNTSDVKADIGSATPSPQPTSGVT GGGGVTISSGGSIVGMHTGPGAGATAEQQLKYENERLKMALAQSCANAKK WEIELATLKNNNIRLTSALQESTANVDEWKRQLHTYKEENIRLKRDMEQL CVGGGVVAAAGGGATEDELRREVATLKARTEQLQKELMQQELELKSANIS LREKSNDQTLAKLSEVNGVFAKHLSELYGVQKDMESLIQIAKCT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14950-PA | 516 | GF14950-PA | 1..387 | 1..387 | 1837 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23589-PA | 394 | GG23589-PA | 1..394 | 1..394 | 2087 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11023-PA | 406 | GH11023-PA | 1..406 | 1..394 | 1750 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
homer-PE | 531 | CG11324-PE | 1..394 | 1..394 | 2009 | 100 | Plus |
homer-PD | 394 | CG11324-PD | 1..394 | 1..394 | 2009 | 100 | Plus |
homer-PA | 394 | CG11324-PA | 1..394 | 1..394 | 2009 | 100 | Plus |
homer-PF | 397 | CG11324-PF | 4..397 | 1..394 | 2000 | 99.5 | Plus |
homer-PG | 400 | CG11324-PG | 7..400 | 1..394 | 2000 | 99.5 | Plus |
homer-PB | 397 | CG11324-PB | 6..397 | 3..394 | 1998 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17542-PA | 531 | GI17542-PA | 1..397 | 1..380 | 1723 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25967-PA | 407 | GL25967-PA | 6..407 | 3..394 | 1695 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10919-PA | 404 | GA10919-PA | 1..404 | 1..394 | 1706 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13902-PA | 394 | GM13902-PA | 1..394 | 1..394 | 2096 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22547-PA | 859 | GD22547-PA | 467..859 | 2..394 | 2072 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15454-PA | 526 | GJ15454-PA | 1..398 | 1..380 | 1704 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24217-PA | 540 | GK24217-PA | 1..386 | 1..380 | 1701 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18410-PA | 394 | GE18410-PA | 1..394 | 1..394 | 2092 | 98.5 | Plus |