Clone LD03829 Report

Search the DGRC for LD03829

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:38
Well:29
Vector:pBS SK-
Associated Gene/Transcripthomer-RA
Protein status:LD03829.pep: gold
Preliminary Size:1986
Sequenced Size:1922

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11324 2001-01-01 Release 2 assignment
CG11324 2003-01-01 Sim4 clustering to Release 3
CG11324 2003-02-28 Blastp of sequenced clone
homer 2008-04-29 Release 5.5 accounting
homer 2008-08-15 Release 5.9 accounting
homer 2008-12-18 5.12 accounting

Clone Sequence Records

LD03829.complete Sequence

1922 bp (1922 high quality bases) assembled on 2003-02-28

GenBank Submission: BT004910

> LD03829.complete
CACCATACAAACATCGATTTTGGTTCCAGCTCTAGACATTTGTGTTTTAT
TTTTTTTAACCGTGAAATTCATAAGTAAAACCGACTAGCATTGGTATAAA
CTGCTGCGGAAGCACTCAGTCAGCGCCAAAGAACGAATACAATGGGCGAA
CAACCGATTTTCACCTGCCAGGCGCACGTCTTCCACATCGATCCGAAGAC
GAAGCGCACCTGGATCACGGCCAGCATGAAGGCGGTCAACGTTAGCTTCT
TCTACGACAGCTCGCGAAATCTGTACCGCATCATCAGTGTCGAGGGCACC
AAGGCGGTGATAAACTCGACGATCACACCCAACATGACCTTCACCCAGAC
CTCCCAGAAGTTCGGCCAGTGGAGCGATGTGCGGGCAAACACGGTGTACG
GCTTGGGATTTGCCTCAGAGGCGGAATTGACCAAGTTCGTAGAGAAGTTC
CAGGAGGTCAAGGAGGCCACCAAGAATGCCATGAAATCGGCCAACGGATC
GAATGCCGTCACGCCCACCACCTCGGCGAACACGTCGCCCATTTCCGGGA
GAGCTGTGGGCTCCATGCAGAACGACAACACAGCCATCGATCCGCACACT
GTGGAGCCGCCCAACATGAGCAACACGAATACCCAGAACGCCAATCCGGA
CAGTCCTTCCCACAAGCTTCTAAATACCAGCGATGTCAAGGCGGACATCG
GATCGGCCACGCCCTCGCCGCAGCCCACTTCAGGGGTAACTGGTGGCGGT
GGAGTGACCATCTCGTCTGGCGGAAGCATTGTGGGCATGCACACGGGTCC
TGGAGCCGGCGCCACCGCCGAGCAGCAGCTTAAGTACGAGAACGAGCGTC
TGAAAATGGCACTGGCACAAAGCTGCGCCAATGCCAAGAAATGGGAAATC
GAGCTGGCTACCTTGAAGAACAACAATATACGGCTGACTAGTGCTCTTCA
GGAATCAACTGCCAATGTAGACGAATGGAAGCGCCAGCTGCACACTTACA
AGGAGGAGAATATTCGCCTCAAACGAGATATGGAGCAGCTGTGCGTGGGC
GGCGGGGTTGTGGCTGCAGCCGGAGGAGGCGCCACAGAGGACGAACTGCG
TCGTGAGGTGGCCACGCTCAAGGCGCGGACAGAACAACTACAGAAGGAAC
TTATGCAACAGGAACTTGAGCTTAAGTCGGCCAATATTAGCCTACGTGAA
AAGTCCAATGACCAAACGCTTGCAAAGTTGAGTGAGGTGAATGGTGTGTT
TGCCAAGCATCTTTCGGAGTTGTATGGGGTGCAGAAGGATATGGAGAGTC
TTATACAAATTGCCAAGTGCACTTGAGACACAGAGTTGGCGTTTATGCGA
AAGGTTTCAGTGCAGGAACAGACTACAATGATTAATACTACAACGACATC
ATCGACAACAACAGGAAGCACGACAAGTAAACGTTATTTAAGCAACTTTC
CAACCGCAGAGGCCGAGAGCACGCTCTCCAACGTCACCTCGATACACACT
CAGCTGCAGTCGTCGCTTTACGAGACTCAGAACATGCCGCAGCTGAAGGC
CTTGGACAAGCATTCGGCTTTGCTCCAAGAGCTTCATCAGCGGCAGGCGG
CACCCAGGCGCAACTCAGCCTCTGCGGAAGCTGCTGCAGCCGGCTCTGGT
GGAGCCAAAACAGCCACCATACTCGTTTCCAAATCAAAAACCAAAACTGG
GCTGCCCCTGTTGCTGAAGAATTCCATTAACAATTAGAGAAATCCCAAAA
AGAAAAACAAATATCGCAGGTAGAGAGAATTTATTCAGTGGCATTTTTGT
AATCTTTATATTGGTAGTTTGTATACAAGGACAACGTTAAGAGTCAGCCA
TGGTACTTCCCCAATCCCCACGCACCCCCTCTTTTTGTTAACATTATTGG
AAAAAAAAAAAAAAAAAAAAAA

LD03829.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
homer.d 2731 homer.d 131..2031 1..1901 9505 100 Plus
homer-RA 2031 homer-RA 131..2031 1..1901 9505 100 Plus
homer.f 3015 homer.f 131..2031 1..1901 9505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6719448..6719996 1900..1352 2730 99.8 Minus
chr2L 23010047 chr2L 6720702..6721140 872..434 2195 100 Minus
chr2L 23010047 chr2L 6721194..6721483 435..146 1450 100 Minus
chr2L 23010047 chr2L 6720240..6720508 1218..950 1330 99.6 Minus
chr2L 23010047 chr2L 6722244..6722389 146..1 730 100 Minus
chr2L 23010047 chr2L 6720045..6720184 1357..1218 700 100 Minus
chr2L 23010047 chr2L 6720569..6720650 952..871 410 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6720395..6720944 1901..1352 2750 100 Minus
2L 23513712 2L 6721650..6722088 872..434 2195 100 Minus
2L 23513712 2L 6722142..6722431 435..146 1450 100 Minus
2L 23513712 2L 6721188..6721456 1218..950 1345 100 Minus
2L 23513712 2L 6723193..6723338 146..1 730 100 Minus
2L 23513712 2L 6720993..6721132 1357..1218 700 100 Minus
2L 23513712 2L 6721517..6721598 952..871 410 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6720395..6720944 1901..1352 2750 100 Minus
2L 23513712 2L 6721650..6722088 872..434 2195 100 Minus
2L 23513712 2L 6722142..6722431 435..146 1450 100 Minus
2L 23513712 2L 6721188..6721456 1218..950 1345 100 Minus
2L 23513712 2L 6723193..6723338 146..1 730 100 Minus
2L 23513712 2L 6720993..6721132 1357..1218 700 100 Minus
2L 23513712 2L 6721517..6721598 952..871 410 100 Minus
Blast to na_te.dros performed 2019-03-16 13:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 8651..8724 1709..1785 135 67.9 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1438..1484 1717..1763 118 72.3 Plus

LD03829.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:33:10 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6720240..6720506 952..1218 99 <- Minus
chr2L 6720570..6720648 873..951 100 <- Minus
chr2L 6720049..6720183 1219..1353 100 <- Minus
chr2L 6719448..6719994 1354..1900 99 <- Minus
chr2L 6720702..6721138 436..872 100 <- Minus
chr2L 6721194..6721482 147..435 100 <- Minus
chr2L 6722244..6722389 1..146 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:33:44 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RA 1..1185 142..1326 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:44 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RA 1..1185 142..1326 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:30 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RE 1..1596 142..1737 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:11 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RA 1..1185 142..1326 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:20:47 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RE 1..1596 142..1737 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:58:18 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RA 18..1917 1..1900 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:44 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RA 18..1917 1..1900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:30 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RA 22..1921 1..1900 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:11 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RA 18..1917 1..1900 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:47 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
homer-RA 22..1921 1..1900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:10 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6720396..6720942 1354..1900 100 <- Minus
2L 6720997..6721131 1219..1353 100 <- Minus
2L 6721188..6721454 952..1218 100 <- Minus
2L 6721518..6721596 873..951 100 <- Minus
2L 6721650..6722086 436..872 100 <- Minus
2L 6722142..6722430 147..435 100 <- Minus
2L 6723193..6723338 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:10 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6720396..6720942 1354..1900 100 <- Minus
2L 6720997..6721131 1219..1353 100 <- Minus
2L 6721188..6721454 952..1218 100 <- Minus
2L 6721518..6721596 873..951 100 <- Minus
2L 6721650..6722086 436..872 100 <- Minus
2L 6722142..6722430 147..435 100 <- Minus
2L 6723193..6723338 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:10 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6720396..6720942 1354..1900 100 <- Minus
2L 6720997..6721131 1219..1353 100 <- Minus
2L 6721188..6721454 952..1218 100 <- Minus
2L 6721518..6721596 873..951 100 <- Minus
2L 6721650..6722086 436..872 100 <- Minus
2L 6722142..6722430 147..435 100 <- Minus
2L 6723193..6723338 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:30 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6723193..6723338 1..146 100   Minus
arm_2L 6722142..6722430 147..435 100 <- Minus
arm_2L 6720396..6720942 1354..1900 100 <- Minus
arm_2L 6720997..6721131 1219..1353 100 <- Minus
arm_2L 6721188..6721454 952..1218 100 <- Minus
arm_2L 6721518..6721596 873..951 100 <- Minus
arm_2L 6721650..6722086 436..872 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:25 Download gff for LD03829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6720396..6720942 1354..1900 100 <- Minus
2L 6720997..6721131 1219..1353 100 <- Minus
2L 6721188..6721454 952..1218 100 <- Minus
2L 6721518..6721596 873..951 100 <- Minus
2L 6721650..6722086 436..872 100 <- Minus
2L 6722142..6722430 147..435 100 <- Minus
2L 6723193..6723338 1..146 100   Minus

LD03829.hyp Sequence

Translation from 141 to 1325

> LD03829.hyp
MGEQPIFTCQAHVFHIDPKTKRTWITASMKAVNVSFFYDSSRNLYRIISV
EGTKAVINSTITPNMTFTQTSQKFGQWSDVRANTVYGLGFASEAELTKFV
EKFQEVKEATKNAMKSANGSNAVTPTTSANTSPISGRAVGSMQNDNTAID
PHTVEPPNMSNTNTQNANPDSPSHKLLNTSDVKADIGSATPSPQPTSGVT
GGGGVTISSGGSIVGMHTGPGAGATAEQQLKYENERLKMALAQSCANAKK
WEIELATLKNNNIRLTSALQESTANVDEWKRQLHTYKEENIRLKRDMEQL
CVGGGVVAAAGGGATEDELRREVATLKARTEQLQKELMQQELELKSANIS
LREKSNDQTLAKLSEVNGVFAKHLSELYGVQKDMESLIQIAKCT*

LD03829.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
homer-PD 394 CG11324-PD 1..394 1..394 2009 100 Plus
homer-PA 394 CG11324-PA 1..394 1..394 2009 100 Plus
homer-PF 397 CG11324-PF 4..397 1..394 2000 99.5 Plus
homer-PG 400 CG11324-PG 7..400 1..394 2000 99.5 Plus
homer-PB 397 CG11324-PB 6..397 3..394 1998 100 Plus

LD03829.pep Sequence

Translation from 141 to 1325

> LD03829.pep
MGEQPIFTCQAHVFHIDPKTKRTWITASMKAVNVSFFYDSSRNLYRIISV
EGTKAVINSTITPNMTFTQTSQKFGQWSDVRANTVYGLGFASEAELTKFV
EKFQEVKEATKNAMKSANGSNAVTPTTSANTSPISGRAVGSMQNDNTAID
PHTVEPPNMSNTNTQNANPDSPSHKLLNTSDVKADIGSATPSPQPTSGVT
GGGGVTISSGGSIVGMHTGPGAGATAEQQLKYENERLKMALAQSCANAKK
WEIELATLKNNNIRLTSALQESTANVDEWKRQLHTYKEENIRLKRDMEQL
CVGGGVVAAAGGGATEDELRREVATLKARTEQLQKELMQQELELKSANIS
LREKSNDQTLAKLSEVNGVFAKHLSELYGVQKDMESLIQIAKCT*

LD03829.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14950-PA 516 GF14950-PA 1..387 1..387 1837 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23589-PA 394 GG23589-PA 1..394 1..394 2087 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11023-PA 406 GH11023-PA 1..406 1..394 1750 86 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
homer-PE 531 CG11324-PE 1..394 1..394 2009 100 Plus
homer-PD 394 CG11324-PD 1..394 1..394 2009 100 Plus
homer-PA 394 CG11324-PA 1..394 1..394 2009 100 Plus
homer-PF 397 CG11324-PF 4..397 1..394 2000 99.5 Plus
homer-PG 400 CG11324-PG 7..400 1..394 2000 99.5 Plus
homer-PB 397 CG11324-PB 6..397 3..394 1998 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17542-PA 531 GI17542-PA 1..397 1..380 1723 85.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25967-PA 407 GL25967-PA 6..407 3..394 1695 88.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10919-PA 404 GA10919-PA 1..404 1..394 1706 88.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13902-PA 394 GM13902-PA 1..394 1..394 2096 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22547-PA 859 GD22547-PA 467..859 2..394 2072 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15454-PA 526 GJ15454-PA 1..398 1..380 1704 85 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24217-PA 540 GK24217-PA 1..386 1..380 1701 89.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18410-PA 394 GE18410-PA 1..394 1..394 2092 98.5 Plus