Clone LD04071 Report

Search the DGRC for LD04071

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:40
Well:71
Vector:pBS SK-
Associated Gene/TranscriptRhoGAP71E-RA
Protein status:LD04071.pep: gold
Preliminary Size:2980
Sequenced Size:3069

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32149 2001-10-10 Blastp of sequenced clone
RhoGAP71E 2008-04-29 Release 5.5 accounting
RhoGAP71E 2008-08-15 Release 5.9 accounting
RhoGAP71E 2008-12-18 5.12 accounting

Clone Sequence Records

LD04071.complete Sequence

3069 bp (3069 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061070

> LD04071.complete
CTTGATGTCCACACTCCGTTTTCAATATACAGCGAAAAAAGTCGAGCGTG
CGGGCGAGCGCAGCAAAATAATTAAACACTCCCCGAAATAACACAACTAA
ACTAGTGCTAAACTAACCGAAAGTGACGCCGAACGCCGCGTTCTCAACAA
ATCCAAGCGAAATGCGATAGGCGAGCGTTTAATTCAGTAAGCGAAGGGGC
GCAAAAGGCATAGCAGCTCCGAGGCGTTGGCCAAAAAGAAGAAAAGCGCA
AAAGAAACGGAGAAACGCAGTGTAAAAGAGAGACGCGAAGAAGAGAAGAG
AAAAATGCATACAGCAGGAGTGGTGGCGATTTTTTAATCAAAGCTGGCTT
TTCAAAGCTGCTCATTTTGGGCTAAAATCTGGGGCTGCGACGCGAGAGTA
GGTGTCGAAAATAAAGTAAAAAATAATAAAAAATAATAAATAGTGAAAAT
CTGAAAGATATTTTCCGCATATTGGGCAGGCGAACAAATTAACATTCCAG
TCAAGTGAACATGTTTGTGGCCAGCATAAAACCATAAAATCTGCCGAGCA
CATTTTCCTCTGCTCGCTGAAAAACTCGCCAGCACATACATACACGCACA
CACGCGCACGCAAAAGCACACAAACACAGGCAGGAAGGCAGGGAGGCAGG
AAAATCGCGTGAAAAACCATGTCCAGCTGGGCAGAACGCGTCCATAGGCG
CGCCGCGGATTTGGGCAACGTGGTGACCTCCTGCGGCCACCCAGCCACCG
CTCCCGCCTACCCGTACCGCCTCGAAAAGGTCAAATTCGGTGTGCCGCTG
GAGGAGGTGTGCAAGCACAACAACAACATTCCCGGGCCCCTGCTCGTCCT
GATCCTCAAACTGAACAAGGAGTCACCGAACCGCCGCGATGTATTCCGCG
CACCCGGCCACCAGGGCGCAATGAAGAAGCTCATCCACTTCCTGCAGGCC
GGTCGGCTCGTCAACGTGGACAACTATTCGGTGTTCACCATCGCCAGCGT
GCTCAAGAAGTTCCTGCGCAAGATCCCCAATGGGATATTCGGGCGCAGCG
GCGAGATGGAGCTGTTCGCCATCAATGATCTGCAAAACGAAGCCGAGCAA
ACGGAGCGACTGCACAGACTCTTCGGTTCGCTGCCGAAATACACACAGCA
TCTATTAGTTCTACTGTTCGGCACATTCCGGGTTATCGCGAGCAATGCGG
CCCACGCCTCCACCGGAATGACCAGCGAGGCGCTGGGCGTTTCCGTGGCC
CCCAGTTTCTTTCAATCCTGCGTCAGCGATGGCAAAACCGCCCGCATGGA
GGATGTGCTCAAGTTCAAGGTCTCTACGAAGATTATGCAGAATATAATTG
ATAAGTTTGCCACGCACGACATCTTCGGGCGCGACAACTATGAGTACTAC
GCCCGCGTCACAGGACGCATTCTCAAGGTGCAGGACGAGTGGATATGCAG
CTTTCAGTATCCACCACCGCCACGTGGCAAGTTGGCTCAACAAAAATACG
CATTGCAACATTCTTTGGAGGCGGAGAAGACATGGCTGCAGTGCCAATGC
GAGCGTTGGGGCTTACTGGCCCAGGAGGAGTCCCGCTCGACGCCCGCCCT
GCTGACCAGCTCCAGTTCCGCATTGGAGAACAGTGTCCTGTCGCTGGGCG
TTTCCCCCGAACACTCGTTCATCGAGAGCTGCGCCCGTCTCTCAGTTTCG
CTGGAGGGACCTGGCATCTATGCCATGACTTCGTCGCCGTTGCCGGCGAA
GCGGAATGGCAATGGCAACGGAAATGCCACGGACTACGACTATGATGACT
ATGCCGACGATGATGAGGACAACGATGAGCTGGACGGCGTTCACGACTTT
GGTGCCGAATTGGAGATCAGTAGCATAGCTCCGCCGCAGGGAAGTCGTGG
CATCTATCGCCACAAGCAGCGAGCCCAGCAGCAGCCACACCACTACCAAC
AACAGCAGCAGCAGCAGCAGGTGCCGCCTCAGCACCAGCGGGACTACGAC
GAGGACGACGACGATGATGAGGATGAGATGACGTTTATTAAGCGCCGGTA
TCGACAGAACAAAAAGAAGCCGGCGCCGCCGAGCAGCAGCCATCATCAGA
GGCGATTGCGCACTGGCACCAAGAGTCTCGATGGCGGAGGGGAGAGGCGC
ACGGGATCGGGAGCAGCGGGCGGATCAGGAGGAGGTGCTTCAGGCTCGGC
AGTTGGCAATCCGACGCCTCCCAAGCTCAAGCAGCGAACGTGCAGCCGCT
GCAATCGAGGCATTCGGCACAGTAGCTCGTGCAGCTCCAATTCCGCCGGA
GCAACTGGCTCGAATAGCGGAGGAGGCGGCAACGGAGGCTCCGGAGCCGG
AAACGGAGGAGGGGCCGAGGGCGGCATGACCATGGAGGAGCTGAGGGCCG
TCAACCGATATGCGGAGAGCACCAAGAGCCTCTCGTATCTGCCACAGGTG
AGGGACGATTTCTTGCTGGGCTCACGCATTTCCGTTTGAGAACTTGCGAT
AGTTGTGTAGAACGTACCATCTATTATATAGATCCTAGGTCTAACCCCGT
TTGCAAATGCTCGAATTTCTTTTAAGTTTTGGTTTCTTTTTTCCAGGAAA
TGAAAAAGAATCAAGAACCAAGAATATATTAGTATTTAAGTTTTCTCTTT
TTATTTTCTTCCATTTTCTGTTGCGAATTTTTGATTTATTGTAATTGAAT
CCTATTGTAATAACTTAATTTAATATCTTTTGTTTCTTGTGTTTGAATTT
TGTCAATTGGAAATGTTATACCCTCTAATCTTTCTATCATTCACTTCTAC
TTTGACTCTCTCTATCTCTTAACTCGAATCACACAGCAAATTGCTCAAGT
TTGTTTCATTTTGGAAATGATTGCCTAGTTTTTTCTAATATTTTCATAAT
CTAACAAAACGATTTGCGCCTGCCAACGAAACTCAACAACTACTTACACA
AAAACAACAATCAACAACACATTAAGACTTAAGAATTTGAAGAATCTAAG
CTCCCTCACACCCTTTACACCCCCCAAACTGTACAAAAAAGTACAAAAAA
CAAAAAAAAAAAAAAAAAA

LD04071.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP71E-RA 3207 RhoGAP71E-RA 22..3090 1..3069 15330 99.9 Plus
RhoGAP71E-RC 3705 RhoGAP71E-RC 22..2470 1..2449 12245 100 Plus
RhoGAP71E-RB 3058 RhoGAP71E-RB 22..2469 1..2448 12240 100 Plus
RhoGAP71E-RB 3058 RhoGAP71E-RB 2466..2941 2594..3069 2365 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15591566..15593053 1563..3050 7350 99.6 Plus
chr3L 24539361 chr3L 15578808..15579923 1..1117 5460 99.5 Plus
chr3L 24539361 chr3L 15590348..15590554 1115..1321 1035 100 Plus
chr3L 24539361 chr3L 15590621..15590806 1318..1503 930 100 Plus
chr3L 24539361 chr3L 15591168..15591230 1504..1566 315 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15601631..15603137 1563..3069 7505 99.9 Plus
3L 28110227 3L 15588880..15589996 1..1117 5585 100 Plus
3L 28110227 3L 15600413..15600619 1115..1321 1035 100 Plus
3L 28110227 3L 15600686..15600871 1318..1503 930 100 Plus
3L 28110227 3L 15601233..15601295 1504..1566 315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15594731..15596237 1563..3069 7505 99.8 Plus
3L 28103327 3L 15581980..15583096 1..1117 5585 100 Plus
3L 28103327 3L 15593513..15593719 1115..1321 1035 100 Plus
3L 28103327 3L 15593786..15593971 1318..1503 930 100 Plus
3L 28103327 3L 15594333..15594395 1504..1566 315 100 Plus
Blast to na_te.dros performed 2019-03-16 02:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6148..6231 2758..2677 162 72.1 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1343..1446 2799..2694 128 60.4 Minus
TAHRE 10463 TAHRE OSV 10463bp 7849..7937 2925..3012 118 60.7 Plus

LD04071.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:22:00 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15578808..15579923 1..1117 99 -> Plus
chr3L 15590351..15590552 1118..1319 100 -> Plus
chr3L 15590623..15590806 1320..1503 100 -> Plus
chr3L 15591168..15591230 1504..1566 100 -> Plus
chr3L 15591570..15593053 1567..3051 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:22:18 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..1821 669..2489 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:47:20 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..1821 669..2489 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:58 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..1821 669..2489 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:16:07 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..1821 669..2489 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:07:00 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..1821 669..2489 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:22:18 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..3051 1..3051 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:47:20 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..3051 1..3051 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:58 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 21..3071 1..3051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:16:07 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 1..3051 1..3051 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:07:00 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP71E-RA 21..3071 1..3051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:00 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15588880..15589996 1..1117 100 -> Plus
3L 15600416..15600617 1118..1319 100 -> Plus
3L 15600688..15600871 1320..1503 100 -> Plus
3L 15601233..15601295 1504..1566 100 -> Plus
3L 15601635..15603119 1567..3051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:00 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15588880..15589996 1..1117 100 -> Plus
3L 15600416..15600617 1118..1319 100 -> Plus
3L 15600688..15600871 1320..1503 100 -> Plus
3L 15601233..15601295 1504..1566 100 -> Plus
3L 15601635..15603119 1567..3051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:22:00 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15588880..15589996 1..1117 100 -> Plus
3L 15600416..15600617 1118..1319 100 -> Plus
3L 15600688..15600871 1320..1503 100 -> Plus
3L 15601233..15601295 1504..1566 100 -> Plus
3L 15601635..15603119 1567..3051 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:58 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15581980..15583096 1..1117 100 -> Plus
arm_3L 15593516..15593717 1118..1319 100 -> Plus
arm_3L 15593788..15593971 1320..1503 100 -> Plus
arm_3L 15594333..15594395 1504..1566 100 -> Plus
arm_3L 15594735..15596219 1567..3051 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:52:58 Download gff for LD04071.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15593516..15593717 1118..1319 100 -> Plus
3L 15593788..15593971 1320..1503 100 -> Plus
3L 15594333..15594395 1504..1566 100 -> Plus
3L 15581980..15583096 1..1117 100 -> Plus
3L 15594735..15596219 1567..3051 100   Plus

LD04071.pep Sequence

Translation from 668 to 2488

> LD04071.pep
MSSWAERVHRRAADLGNVVTSCGHPATAPAYPYRLEKVKFGVPLEEVCKH
NNNIPGPLLVLILKLNKESPNRRDVFRAPGHQGAMKKLIHFLQAGRLVNV
DNYSVFTIASVLKKFLRKIPNGIFGRSGEMELFAINDLQNEAEQTERLHR
LFGSLPKYTQHLLVLLFGTFRVIASNAAHASTGMTSEALGVSVAPSFFQS
CVSDGKTARMEDVLKFKVSTKIMQNIIDKFATHDIFGRDNYEYYARVTGR
ILKVQDEWICSFQYPPPPRGKLAQQKYALQHSLEAEKTWLQCQCERWGLL
AQEESRSTPALLTSSSSALENSVLSLGVSPEHSFIESCARLSVSLEGPGI
YAMTSSPLPAKRNGNGNGNATDYDYDDYADDDEDNDELDGVHDFGAELEI
SSIAPPQGSRGIYRHKQRAQQQPHHYQQQQQQQQVPPQHQRDYDEDDDDD
EDEMTFIKRRYRQNKKKPAPPSSSHHQRRLRTGTKSLDGGGERRTGSGAA
GGSGGGASGSAVGNPTPPKLKQRTCSRCNRGIRHSSSCSSNSAGATGSNS
GGGGNGGSGAGNGGGAEGGMTMEELRAVNRYAESTKSLSYLPQVRDDFLL
GSRISV*

LD04071.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24084-PA 1022 GF24084-PA 1..609 1..606 2440 87.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15914-PA 608 GG15914-PA 1..597 1..593 3114 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17082-PA 990 GH17082-PA 1..629 1..606 2240 77.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP71E-PA 606 CG32149-PA 1..606 1..606 3186 100 Plus
RhoGAP71E-PD 906 CG32149-PD 1..616 1..606 3131 97.2 Plus
RhoGAP71E-PC 896 CG32149-PC 1..616 1..606 3131 97.2 Plus
RhoGAP71E-PE 598 CG32149-PE 1..594 1..594 3125 99.8 Plus
RhoGAP71E-PB 604 CG32149-PB 1..593 1..593 3124 100 Plus
RhoGAP71E-PG 454 CG32149-PG 1..327 1..330 1585 93 Plus
RhoGAP71E-PF 301 CG32149-PF 1..299 1..299 1573 100 Plus
ftz-f1-PC 803 CG4059-PC 15..263 323..571 175 27.1 Plus
ftz-f1-PA 803 CG4059-PA 15..263 323..571 175 27.1 Plus
ftz-f1-PD 853 CG4059-PD 15..263 323..571 175 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11684-PA 917 GI11684-PA 1..616 1..606 2264 80 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24954-PA 227 GL24954-PA 1..167 1..167 794 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16714-PA 891 GA16714-PA 1..616 1..606 2357 80.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25546-PA 602 GM25546-PA 1..591 1..593 3142 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14559-PA 567 GD14559-PA 1..541 1..543 2832 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11356-PA 893 GJ11356-PA 1..610 1..606 2285 80.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20456-PA 624 GK20456-PA 1..609 1..593 2181 74.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19835-PA 610 GE19835-PA 1..610 1..606 3182 97.9 Plus
Dyak\GE22259-PA 318 GE22259-PA 1..299 1..299 1636 99.7 Plus

LD04071.hyp Sequence

Translation from 668 to 2488

> LD04071.hyp
MSSWAERVHRRAADLGNVVTSCGHPATAPAYPYRLEKVKFGVPLEEVCKH
NNNIPGPLLVLILKLNKESPNRRDVFRAPGHQGAMKKLIHFLQAGRLVNV
DNYSVFTIASVLKKFLRKIPNGIFGRSGEMELFAINDLQNEAEQTERLHR
LFGSLPKYTQHLLVLLFGTFRVIASNAAHASTGMTSEALGVSVAPSFFQS
CVSDGKTARMEDVLKFKVSTKIMQNIIDKFATHDIFGRDNYEYYARVTGR
ILKVQDEWICSFQYPPPPRGKLAQQKYALQHSLEAEKTWLQCQCERWGLL
AQEESRSTPALLTSSSSALENSVLSLGVSPEHSFIESCARLSVSLEGPGI
YAMTSSPLPAKRNGNGNGNATDYDYDDYADDDEDNDELDGVHDFGAELEI
SSIAPPQGSRGIYRHKQRAQQQPHHYQQQQQQQQVPPQHQRDYDEDDDDD
EDEMTFIKRRYRQNKKKPAPPSSSHHQRRLRTGTKSLDGGGERRTGSGAA
GGSGGGASGSAVGNPTPPKLKQRTCSRCNRGIRHSSSCSSNSAGATGSNS
GGGGNGGSGAGNGGGAEGGMTMEELRAVNRYAESTKSLSYLPQVRDDFLL
GSRISV*

LD04071.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP71E-PA 606 CG32149-PA 1..606 1..606 3186 100 Plus
RhoGAP71E-PD 906 CG32149-PD 1..616 1..606 3131 97.2 Plus
RhoGAP71E-PC 896 CG32149-PC 1..616 1..606 3131 97.2 Plus
RhoGAP71E-PE 598 CG32149-PE 1..594 1..594 3125 99.8 Plus
RhoGAP71E-PB 604 CG32149-PB 1..593 1..593 3124 100 Plus