BDGP Sequence Production Resources |
Search the DGRC for LD04071
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 40 |
Well: | 71 |
Vector: | pBS SK- |
Associated Gene/Transcript | RhoGAP71E-RA |
Protein status: | LD04071.pep: gold |
Preliminary Size: | 2980 |
Sequenced Size: | 3069 |
Gene | Date | Evidence |
---|---|---|
CG32149 | 2001-10-10 | Blastp of sequenced clone |
RhoGAP71E | 2008-04-29 | Release 5.5 accounting |
RhoGAP71E | 2008-08-15 | Release 5.9 accounting |
RhoGAP71E | 2008-12-18 | 5.12 accounting |
3069 bp (3069 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061070
> LD04071.complete CTTGATGTCCACACTCCGTTTTCAATATACAGCGAAAAAAGTCGAGCGTG CGGGCGAGCGCAGCAAAATAATTAAACACTCCCCGAAATAACACAACTAA ACTAGTGCTAAACTAACCGAAAGTGACGCCGAACGCCGCGTTCTCAACAA ATCCAAGCGAAATGCGATAGGCGAGCGTTTAATTCAGTAAGCGAAGGGGC GCAAAAGGCATAGCAGCTCCGAGGCGTTGGCCAAAAAGAAGAAAAGCGCA AAAGAAACGGAGAAACGCAGTGTAAAAGAGAGACGCGAAGAAGAGAAGAG AAAAATGCATACAGCAGGAGTGGTGGCGATTTTTTAATCAAAGCTGGCTT TTCAAAGCTGCTCATTTTGGGCTAAAATCTGGGGCTGCGACGCGAGAGTA GGTGTCGAAAATAAAGTAAAAAATAATAAAAAATAATAAATAGTGAAAAT CTGAAAGATATTTTCCGCATATTGGGCAGGCGAACAAATTAACATTCCAG TCAAGTGAACATGTTTGTGGCCAGCATAAAACCATAAAATCTGCCGAGCA CATTTTCCTCTGCTCGCTGAAAAACTCGCCAGCACATACATACACGCACA CACGCGCACGCAAAAGCACACAAACACAGGCAGGAAGGCAGGGAGGCAGG AAAATCGCGTGAAAAACCATGTCCAGCTGGGCAGAACGCGTCCATAGGCG CGCCGCGGATTTGGGCAACGTGGTGACCTCCTGCGGCCACCCAGCCACCG CTCCCGCCTACCCGTACCGCCTCGAAAAGGTCAAATTCGGTGTGCCGCTG GAGGAGGTGTGCAAGCACAACAACAACATTCCCGGGCCCCTGCTCGTCCT GATCCTCAAACTGAACAAGGAGTCACCGAACCGCCGCGATGTATTCCGCG CACCCGGCCACCAGGGCGCAATGAAGAAGCTCATCCACTTCCTGCAGGCC GGTCGGCTCGTCAACGTGGACAACTATTCGGTGTTCACCATCGCCAGCGT GCTCAAGAAGTTCCTGCGCAAGATCCCCAATGGGATATTCGGGCGCAGCG GCGAGATGGAGCTGTTCGCCATCAATGATCTGCAAAACGAAGCCGAGCAA ACGGAGCGACTGCACAGACTCTTCGGTTCGCTGCCGAAATACACACAGCA TCTATTAGTTCTACTGTTCGGCACATTCCGGGTTATCGCGAGCAATGCGG CCCACGCCTCCACCGGAATGACCAGCGAGGCGCTGGGCGTTTCCGTGGCC CCCAGTTTCTTTCAATCCTGCGTCAGCGATGGCAAAACCGCCCGCATGGA GGATGTGCTCAAGTTCAAGGTCTCTACGAAGATTATGCAGAATATAATTG ATAAGTTTGCCACGCACGACATCTTCGGGCGCGACAACTATGAGTACTAC GCCCGCGTCACAGGACGCATTCTCAAGGTGCAGGACGAGTGGATATGCAG CTTTCAGTATCCACCACCGCCACGTGGCAAGTTGGCTCAACAAAAATACG CATTGCAACATTCTTTGGAGGCGGAGAAGACATGGCTGCAGTGCCAATGC GAGCGTTGGGGCTTACTGGCCCAGGAGGAGTCCCGCTCGACGCCCGCCCT GCTGACCAGCTCCAGTTCCGCATTGGAGAACAGTGTCCTGTCGCTGGGCG TTTCCCCCGAACACTCGTTCATCGAGAGCTGCGCCCGTCTCTCAGTTTCG CTGGAGGGACCTGGCATCTATGCCATGACTTCGTCGCCGTTGCCGGCGAA GCGGAATGGCAATGGCAACGGAAATGCCACGGACTACGACTATGATGACT ATGCCGACGATGATGAGGACAACGATGAGCTGGACGGCGTTCACGACTTT GGTGCCGAATTGGAGATCAGTAGCATAGCTCCGCCGCAGGGAAGTCGTGG CATCTATCGCCACAAGCAGCGAGCCCAGCAGCAGCCACACCACTACCAAC AACAGCAGCAGCAGCAGCAGGTGCCGCCTCAGCACCAGCGGGACTACGAC GAGGACGACGACGATGATGAGGATGAGATGACGTTTATTAAGCGCCGGTA TCGACAGAACAAAAAGAAGCCGGCGCCGCCGAGCAGCAGCCATCATCAGA GGCGATTGCGCACTGGCACCAAGAGTCTCGATGGCGGAGGGGAGAGGCGC ACGGGATCGGGAGCAGCGGGCGGATCAGGAGGAGGTGCTTCAGGCTCGGC AGTTGGCAATCCGACGCCTCCCAAGCTCAAGCAGCGAACGTGCAGCCGCT GCAATCGAGGCATTCGGCACAGTAGCTCGTGCAGCTCCAATTCCGCCGGA GCAACTGGCTCGAATAGCGGAGGAGGCGGCAACGGAGGCTCCGGAGCCGG AAACGGAGGAGGGGCCGAGGGCGGCATGACCATGGAGGAGCTGAGGGCCG TCAACCGATATGCGGAGAGCACCAAGAGCCTCTCGTATCTGCCACAGGTG AGGGACGATTTCTTGCTGGGCTCACGCATTTCCGTTTGAGAACTTGCGAT AGTTGTGTAGAACGTACCATCTATTATATAGATCCTAGGTCTAACCCCGT TTGCAAATGCTCGAATTTCTTTTAAGTTTTGGTTTCTTTTTTCCAGGAAA TGAAAAAGAATCAAGAACCAAGAATATATTAGTATTTAAGTTTTCTCTTT TTATTTTCTTCCATTTTCTGTTGCGAATTTTTGATTTATTGTAATTGAAT CCTATTGTAATAACTTAATTTAATATCTTTTGTTTCTTGTGTTTGAATTT TGTCAATTGGAAATGTTATACCCTCTAATCTTTCTATCATTCACTTCTAC TTTGACTCTCTCTATCTCTTAACTCGAATCACACAGCAAATTGCTCAAGT TTGTTTCATTTTGGAAATGATTGCCTAGTTTTTTCTAATATTTTCATAAT CTAACAAAACGATTTGCGCCTGCCAACGAAACTCAACAACTACTTACACA AAAACAACAATCAACAACACATTAAGACTTAAGAATTTGAAGAATCTAAG CTCCCTCACACCCTTTACACCCCCCAAACTGTACAAAAAAGTACAAAAAA CAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RhoGAP71E-RA | 3207 | RhoGAP71E-RA | 22..3090 | 1..3069 | 15330 | 99.9 | Plus |
RhoGAP71E-RC | 3705 | RhoGAP71E-RC | 22..2470 | 1..2449 | 12245 | 100 | Plus |
RhoGAP71E-RB | 3058 | RhoGAP71E-RB | 22..2469 | 1..2448 | 12240 | 100 | Plus |
RhoGAP71E-RB | 3058 | RhoGAP71E-RB | 2466..2941 | 2594..3069 | 2365 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15591566..15593053 | 1563..3050 | 7350 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 15578808..15579923 | 1..1117 | 5460 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 15590348..15590554 | 1115..1321 | 1035 | 100 | Plus |
chr3L | 24539361 | chr3L | 15590621..15590806 | 1318..1503 | 930 | 100 | Plus |
chr3L | 24539361 | chr3L | 15591168..15591230 | 1504..1566 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15601631..15603137 | 1563..3069 | 7505 | 99.9 | Plus |
3L | 28110227 | 3L | 15588880..15589996 | 1..1117 | 5585 | 100 | Plus |
3L | 28110227 | 3L | 15600413..15600619 | 1115..1321 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 15600686..15600871 | 1318..1503 | 930 | 100 | Plus |
3L | 28110227 | 3L | 15601233..15601295 | 1504..1566 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15594731..15596237 | 1563..3069 | 7505 | 99.8 | Plus |
3L | 28103327 | 3L | 15581980..15583096 | 1..1117 | 5585 | 100 | Plus |
3L | 28103327 | 3L | 15593513..15593719 | 1115..1321 | 1035 | 100 | Plus |
3L | 28103327 | 3L | 15593786..15593971 | 1318..1503 | 930 | 100 | Plus |
3L | 28103327 | 3L | 15594333..15594395 | 1504..1566 | 315 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 6148..6231 | 2758..2677 | 162 | 72.1 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1343..1446 | 2799..2694 | 128 | 60.4 | Minus |
TAHRE | 10463 | TAHRE OSV 10463bp | 7849..7937 | 2925..3012 | 118 | 60.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15578808..15579923 | 1..1117 | 99 | -> | Plus |
chr3L | 15590351..15590552 | 1118..1319 | 100 | -> | Plus |
chr3L | 15590623..15590806 | 1320..1503 | 100 | -> | Plus |
chr3L | 15591168..15591230 | 1504..1566 | 100 | -> | Plus |
chr3L | 15591570..15593053 | 1567..3051 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 1..1821 | 669..2489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 1..1821 | 669..2489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 1..1821 | 669..2489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 1..1821 | 669..2489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 1..1821 | 669..2489 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 1..3051 | 1..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 1..3051 | 1..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 21..3071 | 1..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 1..3051 | 1..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RhoGAP71E-RA | 21..3071 | 1..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15588880..15589996 | 1..1117 | 100 | -> | Plus |
3L | 15600416..15600617 | 1118..1319 | 100 | -> | Plus |
3L | 15600688..15600871 | 1320..1503 | 100 | -> | Plus |
3L | 15601233..15601295 | 1504..1566 | 100 | -> | Plus |
3L | 15601635..15603119 | 1567..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15588880..15589996 | 1..1117 | 100 | -> | Plus |
3L | 15600416..15600617 | 1118..1319 | 100 | -> | Plus |
3L | 15600688..15600871 | 1320..1503 | 100 | -> | Plus |
3L | 15601233..15601295 | 1504..1566 | 100 | -> | Plus |
3L | 15601635..15603119 | 1567..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15588880..15589996 | 1..1117 | 100 | -> | Plus |
3L | 15600416..15600617 | 1118..1319 | 100 | -> | Plus |
3L | 15600688..15600871 | 1320..1503 | 100 | -> | Plus |
3L | 15601233..15601295 | 1504..1566 | 100 | -> | Plus |
3L | 15601635..15603119 | 1567..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15581980..15583096 | 1..1117 | 100 | -> | Plus |
arm_3L | 15593516..15593717 | 1118..1319 | 100 | -> | Plus |
arm_3L | 15593788..15593971 | 1320..1503 | 100 | -> | Plus |
arm_3L | 15594333..15594395 | 1504..1566 | 100 | -> | Plus |
arm_3L | 15594735..15596219 | 1567..3051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15593516..15593717 | 1118..1319 | 100 | -> | Plus |
3L | 15593788..15593971 | 1320..1503 | 100 | -> | Plus |
3L | 15594333..15594395 | 1504..1566 | 100 | -> | Plus |
3L | 15581980..15583096 | 1..1117 | 100 | -> | Plus |
3L | 15594735..15596219 | 1567..3051 | 100 | Plus |
Translation from 668 to 2488
> LD04071.pep MSSWAERVHRRAADLGNVVTSCGHPATAPAYPYRLEKVKFGVPLEEVCKH NNNIPGPLLVLILKLNKESPNRRDVFRAPGHQGAMKKLIHFLQAGRLVNV DNYSVFTIASVLKKFLRKIPNGIFGRSGEMELFAINDLQNEAEQTERLHR LFGSLPKYTQHLLVLLFGTFRVIASNAAHASTGMTSEALGVSVAPSFFQS CVSDGKTARMEDVLKFKVSTKIMQNIIDKFATHDIFGRDNYEYYARVTGR ILKVQDEWICSFQYPPPPRGKLAQQKYALQHSLEAEKTWLQCQCERWGLL AQEESRSTPALLTSSSSALENSVLSLGVSPEHSFIESCARLSVSLEGPGI YAMTSSPLPAKRNGNGNGNATDYDYDDYADDDEDNDELDGVHDFGAELEI SSIAPPQGSRGIYRHKQRAQQQPHHYQQQQQQQQVPPQHQRDYDEDDDDD EDEMTFIKRRYRQNKKKPAPPSSSHHQRRLRTGTKSLDGGGERRTGSGAA GGSGGGASGSAVGNPTPPKLKQRTCSRCNRGIRHSSSCSSNSAGATGSNS GGGGNGGSGAGNGGGAEGGMTMEELRAVNRYAESTKSLSYLPQVRDDFLL GSRISV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24084-PA | 1022 | GF24084-PA | 1..609 | 1..606 | 2440 | 87.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15914-PA | 608 | GG15914-PA | 1..597 | 1..593 | 3114 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17082-PA | 990 | GH17082-PA | 1..629 | 1..606 | 2240 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RhoGAP71E-PA | 606 | CG32149-PA | 1..606 | 1..606 | 3186 | 100 | Plus |
RhoGAP71E-PD | 906 | CG32149-PD | 1..616 | 1..606 | 3131 | 97.2 | Plus |
RhoGAP71E-PC | 896 | CG32149-PC | 1..616 | 1..606 | 3131 | 97.2 | Plus |
RhoGAP71E-PE | 598 | CG32149-PE | 1..594 | 1..594 | 3125 | 99.8 | Plus |
RhoGAP71E-PB | 604 | CG32149-PB | 1..593 | 1..593 | 3124 | 100 | Plus |
RhoGAP71E-PG | 454 | CG32149-PG | 1..327 | 1..330 | 1585 | 93 | Plus |
RhoGAP71E-PF | 301 | CG32149-PF | 1..299 | 1..299 | 1573 | 100 | Plus |
ftz-f1-PC | 803 | CG4059-PC | 15..263 | 323..571 | 175 | 27.1 | Plus |
ftz-f1-PA | 803 | CG4059-PA | 15..263 | 323..571 | 175 | 27.1 | Plus |
ftz-f1-PD | 853 | CG4059-PD | 15..263 | 323..571 | 175 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11684-PA | 917 | GI11684-PA | 1..616 | 1..606 | 2264 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24954-PA | 227 | GL24954-PA | 1..167 | 1..167 | 794 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16714-PA | 891 | GA16714-PA | 1..616 | 1..606 | 2357 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25546-PA | 602 | GM25546-PA | 1..591 | 1..593 | 3142 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14559-PA | 567 | GD14559-PA | 1..541 | 1..543 | 2832 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11356-PA | 893 | GJ11356-PA | 1..610 | 1..606 | 2285 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20456-PA | 624 | GK20456-PA | 1..609 | 1..593 | 2181 | 74.5 | Plus |
Translation from 668 to 2488
> LD04071.hyp MSSWAERVHRRAADLGNVVTSCGHPATAPAYPYRLEKVKFGVPLEEVCKH NNNIPGPLLVLILKLNKESPNRRDVFRAPGHQGAMKKLIHFLQAGRLVNV DNYSVFTIASVLKKFLRKIPNGIFGRSGEMELFAINDLQNEAEQTERLHR LFGSLPKYTQHLLVLLFGTFRVIASNAAHASTGMTSEALGVSVAPSFFQS CVSDGKTARMEDVLKFKVSTKIMQNIIDKFATHDIFGRDNYEYYARVTGR ILKVQDEWICSFQYPPPPRGKLAQQKYALQHSLEAEKTWLQCQCERWGLL AQEESRSTPALLTSSSSALENSVLSLGVSPEHSFIESCARLSVSLEGPGI YAMTSSPLPAKRNGNGNGNATDYDYDDYADDDEDNDELDGVHDFGAELEI SSIAPPQGSRGIYRHKQRAQQQPHHYQQQQQQQQVPPQHQRDYDEDDDDD EDEMTFIKRRYRQNKKKPAPPSSSHHQRRLRTGTKSLDGGGERRTGSGAA GGSGGGASGSAVGNPTPPKLKQRTCSRCNRGIRHSSSCSSNSAGATGSNS GGGGNGGSGAGNGGGAEGGMTMEELRAVNRYAESTKSLSYLPQVRDDFLL GSRISV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RhoGAP71E-PA | 606 | CG32149-PA | 1..606 | 1..606 | 3186 | 100 | Plus |
RhoGAP71E-PD | 906 | CG32149-PD | 1..616 | 1..606 | 3131 | 97.2 | Plus |
RhoGAP71E-PC | 896 | CG32149-PC | 1..616 | 1..606 | 3131 | 97.2 | Plus |
RhoGAP71E-PE | 598 | CG32149-PE | 1..594 | 1..594 | 3125 | 99.8 | Plus |
RhoGAP71E-PB | 604 | CG32149-PB | 1..593 | 1..593 | 3124 | 100 | Plus |