Clone LD04103 Report

Search the DGRC for LD04103

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:41
Well:3
Vector:pBS SK-
Associated Gene/Transcriptstai-RA
Protein status:LD04103.pep: gold
Preliminary Size:2164
Sequenced Size:2073

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5981 2001-01-01 Release 2 assignment
CG31641 2001-10-10 Blastp of sequenced clone
CG31641 2003-01-01 Sim4 clustering to Release 3
stai 2008-04-29 Release 5.5 accounting
stai 2008-08-15 Release 5.9 accounting
stai 2008-12-18 5.12 accounting

Clone Sequence Records

LD04103.complete Sequence

2073 bp (2073 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061071

> LD04103.complete
CTGCTGAAAAATTAACTTCGGCATAATTTAGTTGGTCTTTGTCTTTCGCT
GTGCTCGTTACGAATCGTCGCCACCTTCTCTCGTTTTCACAGGACTCACT
GGATTTAGGGCCGTGGCAACAATAACAATAACAAAAAGGCACATCGTCGC
GCAATCAAATACAACAATTTTGTAGCATACTTTTCAGCTACACTGCTGCA
ATACGCATTACTCGAATCAATCAAGTTCAAATCAGCTCAGCAGCAAGTGG
TTGCTCTCCCACTTGCAACACAAAAAAAATAACAAAAATCGAATCCAATT
CGCGGTGCAACAAATTGATTTTTTGGGCTGGCGAGAGAAGCGAGAAACCG
TCCGCGATATAAAATAAATAAAAAAAAAACACCGGCAACAAGCAGACCGA
CCACACATATCCCAGCAATCTACACTACCAGTTCTTTAGTTGTGTGAAAG
AAAGCAGATCCCACGATGCTGATTGGATTAGTACGCGACTCGGTGATGCA
GTGCTTCTGCCACACGTGCCGAGCACCTGGAATTCTGCCAGCGGTGTCAA
GAAGATCTGCGCCAATCAAGAAAAATAATAAGATTCGCTCCAAGCAGCCG
CGTCTCAGCAAGAAAGTTAAATTTATTACCACAGAGATTCGCTGCCAGGA
GAAGTCCCGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCAC
CCAATGTGGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAGC
GTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTTC
TCTAGAAGCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTCG
AGGAGGCGACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCAG
ACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAGA
GGCCATCATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGATA
TCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAAG
GCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATAT
CAAGAAAATGTTGGATCGCCTAAAGGAGCATGAACGTCGCGCTGAGCTCG
TGCGCCAGAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGAGCGCC
ATTGCCTCCTCAGGCTAAGTGGAGAACGATCCTGCATCGAGAGCTGTGCT
CACCCACTGCAAACATGGTTACAAGGCGACTACAAAAAGAACAGCAACAC
TGCATAATACACCAACACATATTTAAGCAAGAAAACCCTTAAAACTGAAA
ACGATTTCTCAAAATTTCCAAGTATTATGAAAGCAAACGAAGCGAAGGGC
AAGGGCAAAGTCTCAAGATACCGCTGAGCGAGTTTTCTCACGAGCTCTAT
AATGAAACACGAATAAGCTACTATAAAGCGAAAAGAAATGAATGCTTACG
GCAAGTTAATGCAAAAAAAAAATTAGTAAAGGAAATCTACATTTAAACTT
AAAAGCCCAGGCAGAAAAGCCTATGCAAGTTGAATGCATGCCTGTCATTT
AAAATTTCAAATTCTTTTAAAAGTTCACGTTGATTTCAGTTGAAAGTTTA
AAACACTTTTTACCTTGAGTTCCAAGAATGTTATATTCGTTTTGGATTCA
TTATTTTCAAAGTCTTAGTCTTGAATGTTCAAGTTTTTTTTTTTTTTAAT
TACTGTGGCATCGACTGAGGTATTCTCAAAATAATAAGCACGCTGTATTT
GCATCTATGAATGGCTTTCGCGAGTAAAAATTTGAAAATGTTTTTAATTA
AGTTAATGTATACTTTAGTGGTAATTTTAATTTACTAACTTGCAACAACA
TGATACATATACATGCTGAATATAGTTTTACACTAACAAATAATTTGTTC
TTATAAGTTTCGCATTTTCTATCTATAAAATAAATGTCTAACAGAAAAAA
TACATAAGAAATGCTTATACAATTCAATAAAATCAAATACCATGTAAAAC
ACAAAAAAAAAAAAAAAAAAAAA

LD04103.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
stai-RA 2361 stai-RA 109..2162 1..2053 10230 99.9 Plus
stai.b 3148 stai.b 110..1240 1..1131 5655 100 Plus
stai-RB 2518 stai-RB 110..1240 1..1131 5655 100 Plus
stai.b 3148 stai.b 1397..2319 1132..2053 4575 99.8 Plus
stai-RB 2518 stai-RB 1397..2319 1132..2053 4575 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6122029..6122950 1132..2052 4560 99.9 Plus
chr2L 23010047 chr2L 6108732..6109275 1..544 2720 100 Plus
chr2L 23010047 chr2L 6121056..6121241 799..984 930 100 Plus
chr2L 23010047 chr2L 6120825..6120994 629..798 850 100 Plus
chr2L 23010047 chr2L 6121311..6121462 981..1132 760 100 Plus
chr2L 23010047 chr2L 6112080..6112164 544..628 425 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6122978..6123900 1132..2053 4565 99.9 Plus
2L 23513712 2L 6109681..6110224 1..544 2720 100 Plus
2L 23513712 2L 6122005..6122190 799..984 930 100 Plus
2L 23513712 2L 6121774..6121943 629..798 850 100 Plus
2L 23513712 2L 6122260..6122411 981..1132 760 100 Plus
2L 23513712 2L 6113029..6113113 544..628 425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6122978..6123900 1132..2053 4575 99.8 Plus
2L 23513712 2L 6109681..6110224 1..544 2720 100 Plus
2L 23513712 2L 6122005..6122190 799..984 930 100 Plus
2L 23513712 2L 6121774..6121943 629..798 850 100 Plus
2L 23513712 2L 6122260..6122411 981..1132 760 100 Plus
2L 23513712 2L 6113029..6113113 544..628 425 100 Plus
Blast to na_te.dros performed 2019-03-16 10:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 749..965 1821..2037 166 57.4 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 755..976 1449..1668 114 51.4 Plus
Juan 4236 Juan JUAN 4236bp 1328..1443 1923..2040 114 62.8 Plus

LD04103.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:12:11 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6108732..6109275 1..544 95 -> Plus
chr2L 6112081..6112164 545..628 100 -> Plus
chr2L 6120825..6120994 629..798 100 -> Plus
chr2L 6121056..6121241 799..984 100 -> Plus
chr2L 6121315..6121461 985..1131 100 -> Plus
chr2L 6122029..6122950 1132..2052 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:45:58 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..753 466..1218 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:44 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..753 466..1218 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:57:15 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..753 466..1218 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:46 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..753 466..1218 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:59:06 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..753 466..1218 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:45:57 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..2053 1..2052 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:44 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..2053 1..2052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:15 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 15..2067 1..2052 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:46 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 1..2053 1..2052 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:59:06 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
stai-RA 15..2067 1..2052 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:12:11 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6109681..6110224 1..544 100 -> Plus
2L 6113030..6113113 545..628 100 -> Plus
2L 6121774..6121943 629..798 100 -> Plus
2L 6122005..6122190 799..984 100 -> Plus
2L 6122264..6122410 985..1131 100 -> Plus
2L 6122978..6123899 1132..2052 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:12:11 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6109681..6110224 1..544 100 -> Plus
2L 6113030..6113113 545..628 100 -> Plus
2L 6121774..6121943 629..798 100 -> Plus
2L 6122005..6122190 799..984 100 -> Plus
2L 6122264..6122410 985..1131 100 -> Plus
2L 6122978..6123899 1132..2052 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:12:11 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6109681..6110224 1..544 100 -> Plus
2L 6113030..6113113 545..628 100 -> Plus
2L 6121774..6121943 629..798 100 -> Plus
2L 6122005..6122190 799..984 100 -> Plus
2L 6122264..6122410 985..1131 100 -> Plus
2L 6122978..6123899 1132..2052 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:15 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6113030..6113113 545..628 100 -> Plus
arm_2L 6109681..6110224 1..544 100 -> Plus
arm_2L 6121774..6121943 629..798 100 -> Plus
arm_2L 6122005..6122190 799..984 100 -> Plus
arm_2L 6122264..6122410 985..1131 100 -> Plus
arm_2L 6122978..6123899 1132..2052 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:53 Download gff for LD04103.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6122005..6122190 799..984 100 -> Plus
2L 6122264..6122410 985..1131 100 -> Plus
2L 6109681..6110224 1..544 100 -> Plus
2L 6113030..6113113 545..628 100 -> Plus
2L 6121774..6121943 629..798 100 -> Plus
2L 6122978..6123899 1132..2052 99   Plus

LD04103.hyp Sequence

Translation from 465 to 1217

> LD04103.hyp
MLIGLVRDSVMQCFCHTCRAPGILPAVSRRSAPIKKNNKIRSKQPRLSKK
VKFITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIE
QKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQL
ESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQKAIEEK
LKIAQSLRDENIKKMLDRLKEHERRAELVRQNKAQAQDLDGQQSAIASSG
*

LD04103.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
stai-PA 250 CG31641-PA 1..250 1..250 1235 100 Plus
stai-PE 302 CG31641-PE 1..302 1..250 1172 82.8 Plus
stai-PB 302 CG31641-PB 1..302 1..250 1172 82.8 Plus
stai-PD 381 CG31641-PD 133..381 54..250 892 78.7 Plus
stai-PC 257 CG31641-PC 11..257 56..250 888 78.9 Plus

LD04103.pep Sequence

Translation from 465 to 1217

> LD04103.pep
MLIGLVRDSVMQCFCHTCRAPGILPAVSRRSAPIKKNNKIRSKQPRLSKK
VKFITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIE
QKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQTKEQL
ESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQKAIEEK
LKIAQSLRDENIKKMLDRLKEHERRAELVRQNKAQAQDLDGQQSAIASSG
*

LD04103.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14505-PA 302 GF14505-PA 1..302 1..250 1192 80.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10389-PA 302 GG10389-PA 1..302 1..250 1211 81.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10808-PA 303 GH10808-PA 1..303 1..250 1155 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
stai-PA 250 CG31641-PA 1..250 1..250 1235 100 Plus
stai-PE 302 CG31641-PE 1..302 1..250 1172 82.8 Plus
stai-PB 302 CG31641-PB 1..302 1..250 1172 82.8 Plus
stai-PD 381 CG31641-PD 133..381 54..250 892 78.7 Plus
stai-PC 257 CG31641-PC 11..257 56..250 888 78.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17318-PA 302 GI17318-PA 1..302 1..250 1162 77.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19068-PA 302 GL19068-PA 1..302 1..250 1191 79.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16358-PA 302 GA16358-PA 1..302 1..250 1191 79.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18605-PA 285 GM18605-PA 10..285 27..250 1068 81.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15867-PA 397 GJ15867-PA 1..294 1..242 1131 77.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14732-PA 302 GK14732-PA 1..302 1..250 1185 79.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\stai-PA 302 GE13648-PA 1..302 1..250 1210 81.8 Plus