Clone LD04235 Report

Search the DGRC for LD04235

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:42
Well:35
Vector:pBS SK-
Associated Gene/TranscriptDr-RA
Protein status:LD04235.pep: gold
Preliminary Size:2561
Sequenced Size:2546

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1897 2001-01-01 Release 2 assignment
CG1897 2001-11-29 Blastp of sequenced clone
CG1897 2003-01-01 Sim4 clustering to Release 3
Dr 2008-04-29 Release 5.5 accounting
Dr 2008-08-15 Release 5.9 accounting
Dr 2008-12-18 5.12 accounting

Clone Sequence Records

LD04235.complete Sequence

2546 bp (2546 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069324

> LD04235.complete
TCAAGAGGACGTGTCTCTCTCTGGAAATAAATAGCCCCTGAAAAGATACA
AAACGCCGCGTGTGACAGTGTGTGTCTGTGTTTCCCAAGCGTGTGACGAA
CGAGCGCATTAATTGAAAGATAATCAAAACAAATTAACAGCAGACCATGT
CTCAATGAACCAATTAACCGGCGCACCTAAAGCACAGTATTAACGAGCCA
CAGTTACACAAACGATCGAAAGGCTTTATGTTAAAGCTCAGCCCAGCGAG
CATGACAGTTACAGGTCTGCGCCAGACGATGACCAGTCCCACGGTGCCGC
CGAGCAGTAACACTCCCGCGGGTAACCTCATCATCACCAGCAGCAGTAGC
AACAGCGGCAGCAACAGCGGCAGCAACATGAGCAGCGGCAACATGACCAG
CAGCAACCTGACCAACCTGAGTCCTAGCCACCCGGCTGGCCTGAATGCCC
TGGCCAGTCCCACCTCGCCGTCGGCACTGCTGCTGGCCCATCAGCAGCAT
CTGCTGCAGCAGCACCAGCAACACCAGCAGCAGCAGCAACAGCAGCAGCA
GGCGGCGGCGCTCCAGCTGGCCGCAGTGCATCCGCCGGCCCACCATCTGC
ACAAGACCACCTCCCGACTGAGCAACTTTAGTGTGGCCTCTCTCCTGGCG
GACACGAGGCCCAGAACGCCACCCAACCAGGCGGCGGATGGACCCCAGAA
CCTGACCAGTTCGGCGGCCACCTCGCCCATCTCCCAGGCCAGCAGCACGC
CGCCGCCTCCGCCGGCCAGTGCGGCCGCCCAAGTTCCCGCCAACACCTTC
CATCCCGCCGCCGTCGCGCACCACGCCCACTTGCTGCAGGCCGCCCACGC
GGCTGCGGCGGCACATGCCCAGCACCAGGCGATGGCCGCCCAGCTGCGCC
AACAGCAGCAGCAGGCGGACGCCCGGGCCAACTCGCCACCCGCCTCCACG
AGTTCCACGCCCAGCTCCACGCCACTGGGATCCGCACTGGGATCGCAGGG
CAATGTGGCCTCCACTCCCGCCAAAAATGAACGCCATTCGCCGCTGGGCA
GCCACACGGACTCCGAGCTGGAGTACGACGAGGAGATGCTGCAGGACCAC
GAGGCCGATCACGACGAGGAGGAGGACTCCATTGTGGATATCGAGGACAT
GAACGCCGACGACTCGCCGCGCTCCACGCCCGACGGCCTCGACGGCAGCG
GCAAGTCGCTGGAATCGCCGCACGGTCCGCCGCCGGGCTCTCACATGCAA
TCCACGATACTTTCCCCGGCGGCCCTGGCCTCCGGTCATGTGCCCATCCG
CCCGACCCCCTTCAGTGCACTGGCCGCCGCGGCGGTGGCCTGGACGGGAA
TGGGCGGTGGAGTTCCGTGGCCAGGAACCAGACAAATGCCGCCCTTCGGA
CCGCCTGGCATGTTTCCGGGAGCAGGATTCGGTGGAGATGCCAACGAACC
GCCGCGGATCAAGTGCAACCTGCGGAAGCACAAGCCCAACCGGAAGCCCC
GCACCCCCTTCACAACACAGCAGCTGCTCTCGCTGGAGAAGAAGTTCCGG
GAGAAGCAGTACCTGAGCATCGCCGAACGGGCGGAGTTCTCCTCCTCGCT
GCGGCTGACGGAGACGCAGGTGAAGATCTGGTTCCAGAACCGAAGGGCCA
AGGCCAAGCGTCTCCAGGAGGCCGAGATCGAGAAGATCAAGATGGCGGCG
CTGGGCCGAGGAGCACCTGGTGCCCAGTGGGCCATGGCCGGGTACTTCCA
TCCGAGCCTGATGCACCTGGGATAAGTGGCGGCCCAGTTGGTGGGCCACG
ATCGCCAATTGATGCGCCACCAACGCCCACTGGGCCACAGTGCCCACGAT
CATCTTCATCCTGGTAACCAAATAGCCGCTGGCGGCGGTCCTCGAGCGGA
AACCCCCAAAATTTTGCTGTGATGTTAGCGCATTTTACGTTACGATACTT
CCAAATGTTGTTTCAAATGCACACCCTGTAAATAACTATATAAGAAGCGG
AGAAGAATTTGCACCCGATTCGAGCAATCGAACCTTGTATATAGCGAGAG
CAAACAAGCAAGCAGAAAAATGTTTCCTAATTGTACATAAATCTAGCAAG
TAAACCCAATCAATTCAATTCAAAACCTTCGTTCGTTTGTTTCGCATAAC
CAATTGACAAAAGAAACGAACGGCATTCGTTTGCACAAAATCAAGTCAAT
AAGCGTAAATTACCGATTAACTAAATTCATATTTGATTGTATTGTATTGT
ATTTTGCAAAGTAAGTCAGTCTAGCTAATGGATCGATCGTGTATTTAAAA
AATACTTCTAAGCACCTAAACTAAACTAATCTAATGCTATAACTATGCCG
TTAAAAGTACTTTACGATAATACCACAGACCTATACATATAGTTCATACA
CGCATTAAATATTATGAATACACCATATAGCGTTAATCCTCTGTAGTTGT
TTAATCGTAAATCATAAAATCGAAATTGTGAGAAACTGATACAAAAAAAC
ATGCGAAAAGAGCAGAAGGAAAATCATACAAAAAAAAAAAAAAAAA

LD04235.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dr-RA 2628 Dr-RA 59..2591 1..2533 12665 100 Plus
Hmx-RC 2691 Hmx-RC 1942..1987 1594..1639 200 95.6 Plus
slbo-RA 2785 slbo-RA 672..742 338..408 190 84.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25379099..25380535 1..1437 7125 99.7 Plus
chr3R 27901430 chr3R 25386852..25387945 1436..2529 5425 99.7 Plus
chr3R 27901430 chr3R 13391999..13392044 1594..1639 200 95.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29556409..29557845 1..1437 7185 100 Plus
3R 32079331 3R 29564151..29565248 1436..2533 5490 100 Plus
3R 32079331 3R 17567655..17567700 1594..1639 200 95.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29297240..29298676 1..1437 7185 100 Plus
3R 31820162 3R 29304982..29306079 1436..2533 5490 100 Plus
3R 31820162 3R 17308486..17308531 1594..1639 200 95.6 Plus
Blast to na_te.dros performed 2019-03-16 03:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 5110..5312 2088..2280 153 60.1 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 684..767 2298..2217 119 65.5 Minus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 687..722 2255..2217 116 82.1 Minus

LD04235.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:50:08 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25379099..25379421 1..323 99 == Plus
chr3R 25379506..25379589 408..491 98 == Plus
chr3R 25379650..25380535 552..1437 99 -> Plus
chr3R 25386854..25387945 1438..2529 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:34:32 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 1..1548 228..1775 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:09 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 1..1548 228..1775 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:26 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 1..1548 228..1775 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:49:45 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 1..1548 228..1775 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:15:36 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 1..1548 228..1775 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:07 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 23..2551 1..2529 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:09 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 23..2551 1..2529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:26 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 24..2552 1..2529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:49:45 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 23..2551 1..2529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:15:36 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 24..2552 1..2529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:08 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29556409..29557845 1..1437 100 -> Plus
3R 29564153..29565244 1438..2529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:08 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29556409..29557845 1..1437 100 -> Plus
3R 29564153..29565244 1438..2529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:08 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29556409..29557845 1..1437 100 -> Plus
3R 29564153..29565244 1438..2529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:26 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25382131..25383567 1..1437 100 -> Plus
arm_3R 25389875..25390966 1438..2529 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:11 Download gff for LD04235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29297240..29298676 1..1437 100 -> Plus
3R 29304984..29306075 1438..2529 100   Plus

LD04235.pep Sequence

Translation from 227 to 1774

> LD04235.pep
MLKLSPASMTVTGLRQTMTSPTVPPSSNTPAGNLIITSSSSNSGSNSGSN
MSSGNMTSSNLTNLSPSHPAGLNALASPTSPSALLLAHQQHLLQQHQQHQ
QQQQQQQQAAALQLAAVHPPAHHLHKTTSRLSNFSVASLLADTRPRTPPN
QAADGPQNLTSSAATSPISQASSTPPPPPASAAAQVPANTFHPAAVAHHA
HLLQAAHAAAAAHAQHQAMAAQLRQQQQQADARANSPPASTSSTPSSTPL
GSALGSQGNVASTPAKNERHSPLGSHTDSELEYDEEMLQDHEADHDEEED
SIVDIEDMNADDSPRSTPDGLDGSGKSLESPHGPPPGSHMQSTILSPAAL
ASGHVPIRPTPFSALAAAAVAWTGMGGGVPWPGTRQMPPFGPPGMFPGAG
FGGDANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAE
RAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAPGAQ
WAMAGYFHPSLMHLG*

LD04235.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23351-PA 530 GF23351-PA 1..530 1..515 1485 79.2 Plus
Dana\GF23802-PA 532 GF23802-PA 450..514 421..485 213 60 Plus
Dana\GF16414-PA 667 GF16414-PA 554..610 422..478 198 61.4 Plus
Dana\GF18562-PA 334 GF18562-PA 184..244 426..486 197 54.1 Plus
Dana\GF11812-PA 474 GF11812-PA 317..371 426..480 197 60 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11670-PA 520 GG11670-PA 1..520 1..515 2604 97.7 Plus
Dere\GG14457-PA 524 GG14457-PA 442..505 422..485 212 60.9 Plus
Dere\GG23010-PA 327 GG23010-PA 120..185 417..482 200 54.5 Plus
Dere\GG21608-PA 429 GG21608-PA 247..353 388..500 199 40.2 Plus
Dere\GG12166-PA 350 GG12166-PA 195..255 426..486 196 54.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18901-PA 545 GH18901-PA 283..545 261..515 998 89 Plus
Dgri\GH14983-PA 559 GH14983-PA 468..532 421..485 211 60 Plus
Dgri\GH13609-PA 719 GH13609-PA 607..663 422..478 201 61.4 Plus
Dgri\GH20363-PA 327 GH20363-PA 121..186 417..482 199 54.5 Plus
Dgri\GH24130-PA 281 GH24130-PA 147..216 422..491 192 48.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dr-PA 515 CG1897-PA 1..515 1..515 2673 100 Plus
exex-PA 525 CG8254-PA 1..503 56..485 229 25.8 Plus
slou-PA 659 CG6534-PA 122..602 38..478 229 25.8 Plus
slou-PB 698 CG6534-PB 122..602 38..478 229 25.8 Plus
Hmx-PE 592 CG43748-PE 42..543 19..496 219 25.1 Plus
Hmx-PC 592 CG43748-PC 42..543 19..496 219 25.1 Plus
Hmx-PD 718 CG43748-PD 42..543 19..496 219 25.1 Plus
CG32532-PD 688 CG32532-PD 127..594 47..506 214 24.2 Plus
abd-A-PB 590 CG10325-PB 51..455 20..478 212 24.6 Plus
Dbx-PC 741 CG42234-PC 144..497 124..484 207 26 Plus
bsh-PC 429 CG10604-PC 2..353 110..500 204 24.4 Plus
bsh-PB 429 CG10604-PB 2..353 110..500 204 24.4 Plus
Dll-PB 322 CG3629-PB 1..215 308..515 201 31.9 Plus
Dll-PA 327 CG3629-PA 1..215 308..515 201 31.9 Plus
Dll-PC 347 CG3629-PC 1..215 308..515 201 31.9 Plus
ro-PB 350 CG6348-PB 160..256 393..486 201 45.9 Plus
ro-PA 350 CG6348-PA 160..256 393..486 201 45.9 Plus
ems-PA 494 CG2988-PA 31..450 35..483 200 25.5 Plus
en-PA 552 CG9015-PA 100..511 65..478 200 23.6 Plus
en-PB 552 CG9015-PB 100..511 65..478 200 23.6 Plus
CG11085-PA 295 CG11085-PA 22..230 277..491 199 32.4 Plus
unpg-PA 485 CG1650-PA 293..378 391..480 198 45.6 Plus
NK7.1-PD 721 CG8524-PD 43..471 91..499 193 22.9 Plus
NK7.1-PC 721 CG8524-PC 43..471 91..499 193 22.9 Plus
NK7.1-PB 721 CG8524-PB 43..471 91..499 193 22.9 Plus
NK7.1-PA 721 CG8524-PA 43..471 91..499 193 22.9 Plus
vnd-PB 577 CG6172-PB 89..458 7..480 192 24.1 Plus
vnd-PA 723 CG6172-PA 235..604 7..480 192 24.1 Plus
lab-PA 629 CG1264-PA 73..558 58..478 190 23.9 Plus
Smr-PF 3601 CG4013-PF 5..298 14..370 182 25 Plus
Smr-PE 3601 CG4013-PE 5..298 14..370 182 25 Plus
Smr-PD 3601 CG4013-PD 5..298 14..370 182 25 Plus
Smr-PG 3607 CG4013-PG 5..304 14..370 179 24.5 Plus
CG15696-PA 179 CG15696-PA 76..151 408..478 178 48.7 Plus
scro-PA 468 CG17594-PA 54..310 224..478 174 26.6 Plus
lms-PC 378 CG13424-PC 87..152 422..487 173 47 Plus
lms-PB 378 CG13424-PB 87..152 422..487 173 47 Plus
bap-PA 382 CG7902-PA 176..244 422..493 173 51.4 Plus
B-H2-PB 303 CG5488-PB 19..107 402..490 172 41.6 Plus
B-H2-PA 645 CG5488-PA 361..449 402..490 172 41.6 Plus
lab-PB 213 CG1264-PB 62..142 392..478 171 46 Plus
Lmx1a-PC 639 CG32105-PC 8..220 25..256 171 29.8 Plus
Lmx1a-PB 640 CG32105-PB 8..220 25..256 171 29.8 Plus
C15-PA 339 CG7937-PA 218..287 422..491 170 48.6 Plus
CG34031-PC 219 CG34031-PC 127..190 415..478 168 53.1 Plus
lbe-PA 479 CG6545-PA 346..416 414..488 165 49.3 Plus
tin-PA 416 CG7895-PA 286..358 406..478 164 49.3 Plus
E5-PA 524 CG9930-PA 298..363 419..481 163 53 Plus
btn-PA 158 CG5264-PA 72..148 407..483 162 46.8 Plus
lbl-PA 372 CG6570-PA 249..315 419..486 162 52.9 Plus
lbl-PC 410 CG6570-PC 249..315 419..486 162 52.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23117-PA 537 GI23117-PA 272..537 258..515 1086 90.2 Plus
Dmoj\GI13145-PA 551 GI13145-PA 462..526 421..485 210 60 Plus
Dmoj\GI20035-PA 344 GI20035-PA 123..188 417..482 200 54.5 Plus
Dmoj\GI24795-PA 307 GI24795-PA 179..245 419..485 196 58.2 Plus
Dmoj\GI16386-PA 185 GI16386-PA 49..115 422..488 191 49.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13893-PA 436 GL13893-PA 1..436 9..515 970 62.5 Plus
Dper\GL18045-PA 593 GL18045-PA 489..553 421..485 209 58.5 Plus
Dper\GL25620-PA 446 GL25620-PA 248..332 388..478 204 46.3 Plus
Dper\GL16779-PA 328 GL16779-PA 120..185 417..482 199 54.5 Plus
Dper\GL13779-PA 324 GL13779-PA 40..106 419..485 197 58.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15116-PA 533 GA15116-PA 1..533 9..515 1388 71.2 Plus
Dpse\GA20934-PA 575 GA20934-PA 485..549 421..485 214 60 Plus
Dpse\GA10433-PA 447 GA10433-PA 249..333 388..478 204 46.3 Plus
Dpse\GA30058-PA 591 GA30058-PA 463..529 419..485 203 58.2 Plus
Dpse\GA17570-PA 328 GA17570-PA 120..185 417..482 199 54.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12794-PA 533 GM12794-PA 1..490 1..506 1618 88.9 Plus
Dsec\GM17434-PA 84 GM17434-PA 1..84 432..515 449 98.8 Plus
Dsec\GM25007-PA 523 GM25007-PA 439..508 421..490 214 57.1 Plus
Dsec\GM11904-PA 327 GM11904-PA 120..185 417..482 200 54.5 Plus
Dsec\GM15242-PA 280 GM15242-PA 134..200 419..485 197 58.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21441-PA 514 GD21441-PA 1..514 1..515 2639 99.6 Plus
Dsim\GD14043-PA 321 GD14043-PA 236..300 421..485 206 60 Plus
Dsim\GD11901-PA 327 GD11901-PA 120..185 417..482 200 54.5 Plus
Dsim\GD21734-PA 429 GD21734-PA 247..353 388..500 200 40.2 Plus
Dsim\GD18113-PA 345 GD18113-PA 194..254 426..486 196 54.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10606-PA 505 GJ10606-PA 1..505 9..515 1163 71.9 Plus
Dvir\GJ13893-PA 557 GJ13893-PA 469..533 421..485 213 60 Plus
Dvir\GJ24446-PA 699 GJ24446-PA 586..642 422..478 201 61.4 Plus
Dvir\GJ21278-PA 329 GJ21278-PA 123..188 417..482 200 54.5 Plus
Dvir\GJ24443-PA 289 GJ24443-PA 161..227 419..485 197 58.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11900-PA 515 GK11900-PA 228..515 235..515 1071 83.4 Plus
Dwil\GK20585-PA 578 GK20585-PA 486..550 421..485 212 60 Plus
Dwil\GK17836-PA 500 GK17836-PA 328..386 422..480 209 59.3 Plus
Dwil\GK21675-PA 323 GK21675-PA 120..185 417..482 199 54.5 Plus
Dwil\GK25513-PA 254 GK25513-PA 117..188 419..491 195 49.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23858-PA 517 GE23858-PA 1..517 1..515 2581 97.5 Plus
Dyak\GE21647-PA 532 GE21647-PA 447..516 421..490 214 57.1 Plus
Dyak\GE14447-PA 327 GE14447-PA 120..185 417..482 200 54.5 Plus
Dyak\GE12629-PA 428 GE12629-PA 246..352 388..500 199 40.2 Plus
Dyak\GE25478-PA 262 GE25478-PA 136..202 419..485 195 58.2 Plus

LD04235.hyp Sequence

Translation from 227 to 1774

> LD04235.hyp
MLKLSPASMTVTGLRQTMTSPTVPPSSNTPAGNLIITSSSSNSGSNSGSN
MSSGNMTSSNLTNLSPSHPAGLNALASPTSPSALLLAHQQHLLQQHQQHQ
QQQQQQQQAAALQLAAVHPPAHHLHKTTSRLSNFSVASLLADTRPRTPPN
QAADGPQNLTSSAATSPISQASSTPPPPPASAAAQVPANTFHPAAVAHHA
HLLQAAHAAAAAHAQHQAMAAQLRQQQQQADARANSPPASTSSTPSSTPL
GSALGSQGNVASTPAKNERHSPLGSHTDSELEYDEEMLQDHEADHDEEED
SIVDIEDMNADDSPRSTPDGLDGSGKSLESPHGPPPGSHMQSTILSPAAL
ASGHVPIRPTPFSALAAAAVAWTGMGGGVPWPGTRQMPPFGPPGMFPGAG
FGGDANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAE
RAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAPGAQ
WAMAGYFHPSLMHLG*

LD04235.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dr-PA 515 CG1897-PA 1..515 1..515 2673 100 Plus
CG32532-PD 688 CG32532-PD 127..594 47..506 214 24.2 Plus
Dbx-PC 741 CG42234-PC 144..497 124..484 207 26 Plus
Dll-PB 322 CG3629-PB 1..215 308..515 201 31.9 Plus
Dll-PA 327 CG3629-PA 1..215 308..515 201 31.9 Plus