Clone LD04326 Report

Search the DGRC for LD04326

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:43
Well:26
Vector:pBS SK-
Associated Gene/TranscriptCG4911-RA
Protein status:LD04326.pep: gold
Sequenced Size:2344

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4911 2004-10-01 Blastp of sequenced clone
CG4911 2008-04-29 Release 5.5 accounting
CG4911 2008-08-15 Release 5.9 accounting
CG4911 2008-12-18 5.12 accounting

Clone Sequence Records

LD04326.complete Sequence

2344 bp (2344 high quality bases) assembled on 2004-10-01

GenBank Submission: BT016122

> LD04326.complete
CGACGGTCACTCTAATTTGGCATTTTAAATTGTGCAGCGTACTCGGCTGC
ACTTGCAACTTTTCATTGTTTGAAACGCAATTAACATTTAAATCGAGTAA
TGAATTTTAGCCAACGCCAACCAGAATGGCACAGAATACCATCGGTGGCA
CTAAATCACATATTCGACTATCTAAATCCCCAGGATCGTCGGTCGGCAGC
GGGTGTATGTTTTTCTTGGAGACATGCCTTATTTCAAAAACGCTATTTTA
GAAACTTTCGCTTTCAATTGGATGTGGGATGCGATGATCAGTTGGCCTTC
TTCCATCGCTCCATGGCCAACTTGGCCATGGAACTGATAGTAGTCTTCGA
CTTTCAAAATGCAGTTCACATCCAGAAAATGCGAGGACTTCTATACAAAG
TGGCGCACTGTGATAACATCCAGAAATTGCGTTTCCAAACCCACAATGTC
GGCCTTGTTGCCATCGGAAACATGCATAGCGAGCACTTGTTGGCCATCGA
ACAATGCTTTGTGGAGCCGTTGATTCTGTTTTTAAGCCGCAAGCGTCAGC
CCTGCCAGCTTCTGGACCTTGGAGCCATCGAGGCCCTCTCATACTATGGC
CATGATTTTCTAAAGGCTATGGGAAAACCACAGGAACTGCTGCAGCTGAC
ACTCGCGAGCATCAAGTACGATCCTAGTCACTATCCCATCCTCTCGTTGG
ACTCGACCCTGCTGCAGAAATGCGCCGCCCTGCAGGTGCTCTCCCTCGAC
TACGACACACTTTCTGACGAACTGCTGCACACTATCCAGGTGCTTCCGCT
GCGGAAACTTTTGATCGCAGTGCACGGCCTGGATAGCGAAGAGCATCCCG
ATGTGTCGGAGACGGCCTGGTCCAACTTTTCGGATCACTTTTCGAGCATT
GAGTTGGTGCTGACCCTTGTGTATGCCTATGAGGCCATCGCACTACTGCA
GCATCGTGTGCTGCGTAGCAATATGCCTGTAACCCATGTGCGACTGCTAT
TCTGCGAAAAGATGAACGCCGAAGCCTTGGACTGGATGTCGTTGCATTAC
AGGGAAACTCTGCGCAGCATTCACTATGTGGACGCGCCGTACAAATATTC
CAATCGCATGAACTCCAGTCGCCGTGTCTCTTTACTCCAGGATCCATTCG
TAATGATGGCCTGGCGCTGCAAACAGCTGGAGGAGATCGTAGTGCACGGG
TACTTGATGGATCCGCATAACCTCGTGGGCATTGCCCGTCTTCGGGGTCG
GCAGCTAAAGCGTCTGGAAGTCTCCATGATCGATTGGTCAGGCGCTCCTT
TGCTGAACGCCTACAATGAAGAGATAAGCACCTTACTGGGACAACAATGG
TCACCCATCAGCTTTGACAAAATGCCGCCATCGTTGTTCTACGACAACGA
TTTACGCGATCAGTTCGTGTACGAAATGCTGCGCCAGGATCTCCGCCAGT
AAGTGGTCGAAATAGGAAACTACTCAAATATAACCAAAAATTGAAGCAGT
CATCAAGTGAACGAAAGAAATGAAAACATGACACGTGATCAACTCGAGCG
CATAGAAATTAATTTATAAATTGCAAAACCTAATTACGTAGCTAAACAAA
AAACCCAAAAGAATAATGTAAGCAAAAAGAAAATTTAATCGTCATAATCG
TCACCAAACCTTTTGATTGGCGAGCATTTCATAGATGTTAAATTTTCCTA
ATTTCTTAGCCTTTGTAATCAAAATCGCGATTAGCCCTTGTTTATTAGTA
CAAAAGCGACAGATCAAGAGCGACAGGAATGTTAGGAGCAAAGCAAAAGA
CTTGAGCACTTCACAAATTTATGTAATTATGTAACGGGGCGAGATGAGTT
TGTTGAAACCTGCTAGAGAAACATCATTTTATAAGCAACAACAACTGTGA
TTCAAGCGAATGCAGCAGATGCAAATGCAAGCCAGTGTGAAAGCAAATGC
TATACCCAGCTCTCATACAAAGAATAACAAAAACGACAACAGCAAGTTGT
TAAGCGAATTGTCTAGTTAGCTAAGTTTAAAGTAACAAAAAGTGTTGAAA
ATGTTTGTAAAACCAAAACTACGACCAATGTCAAATTGTTTGCTCAAAAC
GACGCAATTGGCACAAATTGTTAACCTTTGTAGTAGTGTGAATAAGTACA
GAATCTGGCGCTCAATTGTGATAAACCAACAAACAACAACATAAGCAAAT
GTAACAACAACGAGAGCTAGATCCTCGTTCGCTAAGCGCCGCCATTTGTG
TAGTTTAAAGTGATATTACCAGCAACAGCAAAGCAAAATGTAAGCAAATA
CAAAACACCACACAGATATAAAAAAAAAAAAAAAAAAAAAAAAA

LD04326.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911.c 5035 CG4911.c 212..2531 1..2320 11600 100 Plus
CG4911.d 4906 CG4911.d 83..2402 1..2320 11600 100 Plus
CG4911.b 3579 CG4911.b 83..2402 1..2320 11600 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9061557..9062569 2319..1321 4770 98.5 Minus
chr3L 24539361 chr3L 9062626..9063443 1321..504 4060 99.8 Minus
chr3L 24539361 chr3L 9064410..9064651 242..1 1210 100 Minus
chr3L 24539361 chr3L 9063668..9063824 398..242 785 100 Minus
chr3L 24539361 chr3L 9063505..9063613 503..395 530 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9069648..9070647 2320..1321 5000 100 Minus
3L 28110227 3L 9070704..9071521 1321..504 4090 100 Minus
3L 28110227 3L 9072488..9072729 242..1 1210 100 Minus
3L 28110227 3L 9071746..9071902 398..242 785 100 Minus
3L 28110227 3L 9071583..9071691 503..395 530 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9062748..9063747 2320..1321 5000 100 Minus
3L 28103327 3L 9063804..9064621 1321..504 4090 100 Minus
3L 28103327 3L 9065588..9065829 242..1 1210 100 Minus
3L 28103327 3L 9064846..9065002 398..242 785 100 Minus
3L 28103327 3L 9064683..9064791 503..395 530 99 Minus
Blast to na_te.dros performed on 2019-03-15 15:43:55 has no hits.

LD04326.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:44:58 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9061557..9061969 1907..2319 100 <- Minus
chr3L 9061982..9062569 1321..1906 99 <- Minus
chr3L 9062627..9063443 504..1320 99 <- Minus
chr3L 9063505..9063609 399..503 100 <- Minus
chr3L 9063668..9063823 243..398 100 <- Minus
chr3L 9064410..9064651 1..242 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:34:36 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 1..1353 100..1452 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:08 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 1..1353 100..1452 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:37:45 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 1..1353 100..1452 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:15:57 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 1..1353 100..1452 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:13:50 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 1..1353 100..1452 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:11 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 1..2319 1..2319 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:08 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 1..2319 1..2319 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:37:45 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 3..2321 1..2319 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:15:58 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 1..2319 1..2319 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:13:50 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 3..2321 1..2319 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:58 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9069649..9070647 1321..2319 100 <- Minus
3L 9070705..9071521 504..1320 100 <- Minus
3L 9071583..9071687 399..503 100 <- Minus
3L 9071746..9071901 243..398 100 <- Minus
3L 9072488..9072729 1..242 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:58 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9069649..9070647 1321..2319 100 <- Minus
3L 9070705..9071521 504..1320 100 <- Minus
3L 9071583..9071687 399..503 100 <- Minus
3L 9071746..9071901 243..398 100 <- Minus
3L 9072488..9072729 1..242 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:44:58 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9069649..9070647 1321..2319 100 <- Minus
3L 9070705..9071521 504..1320 100 <- Minus
3L 9071583..9071687 399..503 100 <- Minus
3L 9071746..9071901 243..398 100 <- Minus
3L 9072488..9072729 1..242 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:37:45 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9062749..9063747 1321..2319 100 <- Minus
arm_3L 9063805..9064621 504..1320 100 <- Minus
arm_3L 9064683..9064787 399..503 100 <- Minus
arm_3L 9064846..9065001 243..398 100 <- Minus
arm_3L 9065588..9065829 1..242 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:52:55 Download gff for LD04326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9064846..9065001 243..398 100 <- Minus
3L 9065588..9065829 1..242 100   Minus
3L 9064683..9064787 399..503 100 <- Minus
3L 9062749..9063747 1321..2319 100 <- Minus
3L 9063805..9064621 504..1320 100 <- Minus

LD04326.pep Sequence

Translation from 99 to 1451

> LD04326.pep
MNFSQRQPEWHRIPSVALNHIFDYLNPQDRRSAAGVCFSWRHALFQKRYF
RNFRFQLDVGCDDQLAFFHRSMANLAMELIVVFDFQNAVHIQKMRGLLYK
VAHCDNIQKLRFQTHNVGLVAIGNMHSEHLLAIEQCFVEPLILFLSRKRQ
PCQLLDLGAIEALSYYGHDFLKAMGKPQELLQLTLASIKYDPSHYPILSL
DSTLLQKCAALQVLSLDYDTLSDELLHTIQVLPLRKLLIAVHGLDSEEHP
DVSETAWSNFSDHFSSIELVLTLVYAYEAIALLQHRVLRSNMPVTHVRLL
FCEKMNAEALDWMSLHYRETLRSIHYVDAPYKYSNRMNSSRRVSLLQDPF
VMMAWRCKQLEEIVVHGYLMDPHNLVGIARLRGRQLKRLEVSMIDWSGAP
LLNAYNEEISTLLGQQWSPISFDKMPPSLFYDNDLRDQFVYEMLRQDLRQ
*

LD04326.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23509-PA 452 GF23509-PA 1..452 1..450 2000 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15039-PA 450 GG15039-PA 1..450 1..450 2183 91.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15901-PA 448 GH15901-PA 4..446 8..448 1682 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-PC 450 CG4911-PC 1..450 1..450 2363 100 Plus
CG4911-PA 450 CG4911-PA 1..450 1..450 2363 100 Plus
CG4911-PB 449 CG4911-PB 1..449 1..450 2346 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16554-PA 444 GI16554-PA 4..442 8..448 1672 73.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15079-PA 451 GL15079-PA 1..450 1..448 1811 75.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18519-PA 451 GA18519-PA 1..450 1..448 1811 75.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24892-PA 450 GM24892-PA 1..450 1..450 2242 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12942-PA 450 GD12942-PA 1..450 1..450 2244 92.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12805-PA 448 GJ12805-PA 4..446 8..448 1673 72.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23855-PA 455 GK23855-PA 1..453 1..449 1852 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21262-PA 450 GE21262-PA 1..450 1..450 2143 91.8 Plus

LD04326.hyp Sequence

Translation from 99 to 1451

> LD04326.hyp
MNFSQRQPEWHRIPSVALNHIFDYLNPQDRRSAAGVCFSWRHALFQKRYF
RNFRFQLDVGCDDQLAFFHRSMANLAMELIVVFDFQNAVHIQKMRGLLYK
VAHCDNIQKLRFQTHNVGLVAIGNMHSEHLLAIEQCFVEPLILFLSRKRQ
PCQLLDLGAIEALSYYGHDFLKAMGKPQELLQLTLASIKYDPSHYPILSL
DSTLLQKCAALQVLSLDYDTLSDELLHTIQVLPLRKLLIAVHGLDSEEHP
DVSETAWSNFSDHFSSIELVLTLVYAYEAIALLQHRVLRSNMPVTHVRLL
FCEKMNAEALDWMSLHYRETLRSIHYVDAPYKYSNRMNSSRRVSLLQDPF
VMMAWRCKQLEEIVVHGYLMDPHNLVGIARLRGRQLKRLEVSMIDWSGAP
LLNAYNEEISTLLGQQWSPISFDKMPPSLFYDNDLRDQFVYEMLRQDLRQ
*

LD04326.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-PC 450 CG4911-PC 1..450 1..450 2363 100 Plus
CG4911-PA 450 CG4911-PA 1..450 1..450 2363 100 Plus
CG4911-PB 449 CG4911-PB 1..449 1..450 2346 99.8 Plus