BDGP Sequence Production Resources |
Search the DGRC for LD04327
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 43 |
Well: | 27 |
Vector: | pBS SK- |
Associated Gene/Transcript | Edc3-RB |
Protein status: | LD04327.pep: gold |
Sequenced Size: | 4059 |
Gene | Date | Evidence |
---|---|---|
CG6311 | 2008-04-29 | Picked prior to 5.5 |
4059 bp assembled on 2009-08-12
GenBank Submission: BT099563.1
> LD04327.complete ACGCAAGCAGTGAAAATCCCAATGAAACGAGAAATCCAATAAGTTTTAGC GTCAATGTGTTGCAACGGTTGGTGCATTTATTGATTAAAAGAGACAAAAT ACCGAACCCCTTGACCGCAGAGCCAAATAATTCAAAAACACCCGACTTTA AGCCACAAAACACTAGAATCAACGGCGGTGCAGCAGCAGGAAGAAGAGGA AGAGAGGTGCGTGGTGCGTAGTTAGTTAGTGGCGAAATTGCGTATTAGAA ACGAAAACAACAAGCAGCTCTGCGCGGGCCAGCAAACATTTCGAACAACC ATTAGCCAGGGCAGAACAAGCCGATCCAACGTGTTGTCGCATTCGCAAAG GGAGTATCGAAAACTGATTACATGGGTCCGACGGATCAAGACTGGATCGG CTGTGCAGTGTCTATAGCCTGCGACGAGGTCCTGGGCGTCTTCCAGGGCC TGATCAAGCAGATTTCTGCCGAGGAGATCACCATTGTGAGGGCTTTCCGC AATGGCGTGCCGCTGCGAAAGCAGAACGCCGAGGTGGTCCTCAAGTGCAC GGACATTCGCAGCATCGATCTCATCGAGCCCGCAAAGCAAGATCTGGATG GGCACACGGCGCCGCCGCCAGTGGTCAACAAGCCCACGCCCGTCAAGCTG CCCCACTTCTCCAACATCCTGGGCAAGCAGCAGCAGCTCCAACTCCAGCA GCAGCAGCAGCAGCTACAACTCCAGCAGCAACAGAAACAGCAGTTCCAGG AGCAGGAACGAGAACAGGATCTGCCATCGACGCCGCGGTCAAGGGCCAAC GACAATGGACGGGTAGCGGCTGGCGGAGCATCGAGTTCTTCGGGCCCACG TGGCAACTTCAATTCGGCGCTAAGCGATAAGATGCATCAGCTGAAGCTAA TCGAGACCAACGGCTCAAATGGCACCCTTAGAACACCACAAACATCCCGT GCGTCCAGCGCTCAGCAGCAGCCGCAGATATCAACGACTCCCAACAGCGT GGCCGCCTTTTTTGGCAACATGATACCGCCGAAGGTCGAGGTGAAACTGG GCTCCTACGTGAGCAACACCCGGGAGAGTTACTGCAGCAGCAGCGGAGAT AGCGGCGAGGCAACTGGTTTGTCGTTGGGCAGCAGCAAACCCATAGATAT CGTCAGCAACGGAGATGGATTTTACAAGCAGACGGCAGCCTCGAGCTATG GGAATACAAATGGAAATGTAAGAAGGAATGGCAATGCCAATAACAATGGA AATGGCACCGGAAATGGTTCTTATACCAATGGAAATGGCAACGGCAACGG GAAGAACAAGCGGAACAGGGTGCGAAGGGAGAGCAGCATGCGGCAGCAAC AGGTGCAACTGACTTTTGGCAGCGAGGCGGACGATCCGCTGATCCACGAG GATTTCGATTTTGAGGGCAATCTAGCGCTGTTCGACAAGCAGGCAATTTG GGACGACATCGAGTCGACGACCCAAAAACCAGATGTGGTGCGGCACATTG TGAACAATCATCATCATAAGCCAGAGCAGAAGTATCGGCACGACGAGAAC ATCCTGGCCAGCAAACCACTACAATTGCGCCAGATCGAAAGCATGTTCGG CGGCAGCCAGGACTTTGTGACGGACGACGGTCTCATTATACCGACGATTC CGGCTTACGTTCGGAATAAAATCGAGATAAGTGCCGATAAGGCGGGCCTC TCTCTGCAGAGGCAGATCGACATTTTGGCGCGCGGAGCCAGTGATCTGGC CATTACACTGCTGGGCGGCGCCAGGCGATTGACGCCGGCCAACAACCATC AGTGGCCGAAGATTGCCATCATCTGCGATGGCGGCAAAAATATGAGGACA ATTAACATTGGAGCAGCCACAGGTCGCCAGCTGGCTTCGCATGGGCTTAC TGTCCTGCTGTACGTGGAGCAGGCCAAACTGCTGGAGCAGAACAGCAGCA GCCCAGAGATTTCATTGTTCAAGGCAACCGACAATGTCATAGTTCACTCA GTAGACGCCTTACCCACGCCAGATCTTGTGATATTATCAACTAACACCGC TAATTTATCGGATGCGATCAGGAAATGGCTCAGTGTAAATCGCGCTTCGG TGCTTGCCATAGACCCGCCGCCGTGTGGCATTAATGAGGTTGCTATCAAG TACTCAATACTACCCATACTACCATTAAATGGCATATCAACAGCAACAAC ATCATCATCCTCTTCGGCTGCCGCCACACCAACTCCCATTGCTAGCACTT CGGCAGCAGCATCGGCTACCAAATCAGCAGCATCAACGAACAATTGTGGC AAATTGTATTTATGTAATCTAGGTATACCGGATAAATTCTATCGTGATTG TGGCATTAAGTACAAAAGTCCGTATGGACATAAATATGTGATACCGATTC ACTCAAAGGACTGAAACAACGACAACACAAACACCAACATTTACAACAGC AATCAAACTGCAGCATCAGCAACAACTGCAATCCATTAAAACAAGAATAA GCACATACAACAAAAAACAATAACAATGACACACCCGCACACTTGTGATG ATCATCAAGTCCAGTTTCCTGTGAATCTAGCTCTTAGTACTCTTCTCTCA TATATTACTCAAGTTAAACATTTTGTTCTACGGCGCGTACACATATAGTT TTTAGGTTACTTCACGCATCATCCCTTTAGATACGCCTAGTTATTATAAT CTATATTTTCTAAATTAATTCAAAGCTGCCGGCCAAGTGCCAAACTATGA TTAGTTTCCAACTGTACCCTATAGATTTTTTTTTCATTTTAAGCAACGAC ACTTCTTGTTCAGCCCTCTGTTTTGAAAGCTAGTCCAGCATTTACAAGTT TATAAAGCTTTAGTTTAGGCGCACGCTCTAAGGAATTTTTCCAACATTCA ATCCAAAATTTCCTAAGGTTTTAATTTAATTTACAATTCACTGTCCTTCC TGCAAGTGGTCTTCATAATCGTAAACAACAAATCAGGCGAGAAATTGTTT GTAAATAACTATACAATTCTATGGGGAAAGATAAGATCATGTTAATTACT ATCAAGTATGCGCAATAAATGCCAAATTCAATGTCTAATTTTAAGCATTA AATCAACAGCAAAAGCAACAACTATTGTACGATGTAATATGGAATACAAA TCCAAGTATAAATCAAATCAGATTAGTTAAGTAAGTTTCGTAAGAATACA GTGTTTAAAAGTTTAACAGACCATAACAAACAAAACAAAACAAAACTTAT AAAATGAGAAACACTTTATATTATGTATAGAAATAATTAAGATGTGTCTT TAAGGGAAACTAAACAAAGTCGAGAGCATAATTTTTTACCCATCGAATAC TAAAAAGAAACCACAACACAATACTTATAATATAAACTGTAGAGCGATTA ATTTTATATAAGATTAAATCCAATCTAATAGTGCAAAATTTTAGAAGGTT GCGACTCAGCAAGGCAACCAAAAACTCAAAACAAAAAACCCAAATTGAAA CTACTTGTTGTATAAATAATAACTATAGTTGTAAACTCCAATCATGTTGA TGATCATCTGCAAATTCAATTTCCAAACCCATCAAATTATATTGTAAAAA GAGAGTTGAATGCGGATCAATCAGCCGCCAGGCGGATCCCGCAGTGACTG TTTTGCGTTAGGAGTAGAAACGATGACCAGACCTTAAAGGGATGTTGGTG GCGAGGGAGGATGAGAAGGTTTTTCCAATACCACAGTAACCACAGATTTC ACAGCCAAACAAATTAACACCAAGACAAGGAGAAACAACAAACAACCAGA TTTTGGTAACGCTTTAAAATTAAAAAAAAACATCTATTTTTGGGCCAATT GAAATTGTTAAACAAAGAATGAAAACCTAATTTTAAATTTATACTTAAAA GACAAAAATTGTACGTAAATTCTTTTTTGGAACCAGAAATCGGGCAGAAA AAAACGGATACAAGAGAAAGTCCTTTCCAACGTAACAGCAAAATTAAAAA ATACAAAACAACACCGAGAAGCCTTCTCATGGAAGAAAACAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Edc3-RB | 4153 | Edc3-RB | 59..4100 | 1..4042 | 20195 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 17514860..17516809 | 4040..2092 | 9670 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 17518437..17519367 | 931..1 | 4655 | 100 | Minus |
chr3L | 24539361 | chr3L | 17517233..17518150 | 1847..930 | 4590 | 100 | Minus |
chr3L | 24539361 | chr3L | 17517011..17517170 | 2007..1848 | 800 | 100 | Minus |
chr3L | 24539361 | chr3L | 17516864..17516949 | 2092..2007 | 430 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 17525331..17527281 | 4042..2092 | 9755 | 100 | Minus |
3L | 28110227 | 3L | 17528909..17529839 | 931..1 | 4655 | 100 | Minus |
3L | 28110227 | 3L | 17527705..17528622 | 1847..930 | 4590 | 100 | Minus |
3L | 28110227 | 3L | 17527483..17527642 | 2007..1848 | 800 | 100 | Minus |
3L | 28110227 | 3L | 17527336..17527421 | 2092..2007 | 430 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 17518431..17520381 | 4042..2092 | 9755 | 100 | Minus |
3L | 28103327 | 3L | 17522009..17522939 | 931..1 | 4655 | 100 | Minus |
3L | 28103327 | 3L | 17520805..17521722 | 1847..930 | 4590 | 100 | Minus |
3L | 28103327 | 3L | 17520583..17520742 | 2007..1848 | 800 | 100 | Minus |
3L | 28103327 | 3L | 17520436..17520521 | 2092..2007 | 430 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6903 | 2186..2304 | 176 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6845 | 2186..2287 | 175 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6921 | 2155..2292 | 174 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2494 | 2184..2292 | 171 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2429 | 2186..2293 | 155 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6837 | 2184..2301 | 153 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2408..2513 | 2184..2289 | 152 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6860 | 2186..2287 | 143 | 61.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2908 | 2184..2288 | 130 | 61.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2559 | 2188..2311 | 127 | 57.3 | Plus |
micropia | 5461 | micropia DMDM11 5461bp | 5374..5431 | 3580..3636 | 125 | 70.7 | Plus |
micropia | 5461 | micropia DMDM11 5461bp | 389..446 | 3580..3636 | 125 | 70.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1176 | 2189..2293 | 122 | 61.1 | Plus |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6038..6366 | 3074..3386 | 121 | 53.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 17518437..17518591 | 777..931 | 100 | == | Minus |
chr3L | 17514860..17516369 | 2532..4040 | 99 | == | Minus |
chr3L | 17516487..17516808 | 2093..2414 | 100 | <- | Minus |
chr3L | 17516864..17516948 | 2008..2092 | 100 | <- | Minus |
chr3L | 17517011..17517171 | 1847..2007 | 99 | <- | Minus |
chr3L | 17517234..17518148 | 932..1846 | 100 | <- | Minus |
chr3L | 17518693..17519367 | 1..675 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Edc3-RB | 1..2043 | 372..2414 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Edc3-RB | 1..2043 | 372..2414 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Edc3-RB | 1..2043 | 372..2414 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Edc3-RB | 1..2043 | 372..2414 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Edc3-RB | 38..4077 | 1..4040 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Edc3-RB | 38..4077 | 1..4040 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Edc3-RB | 23..4062 | 1..4040 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Edc3-RB | 23..4062 | 1..4040 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17525333..17527280 | 2093..4040 | 100 | <- | Minus |
3L | 17527336..17527420 | 2008..2092 | 100 | <- | Minus |
3L | 17527483..17527643 | 1847..2007 | 99 | <- | Minus |
3L | 17527706..17528620 | 932..1846 | 100 | <- | Minus |
3L | 17528909..17529839 | 1..931 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17525333..17527280 | 2093..4040 | 100 | <- | Minus |
3L | 17527336..17527420 | 2008..2092 | 100 | <- | Minus |
3L | 17527483..17527643 | 1847..2007 | 99 | <- | Minus |
3L | 17527706..17528620 | 932..1846 | 100 | <- | Minus |
3L | 17528909..17529839 | 1..931 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17525333..17527280 | 2093..4040 | 100 | <- | Minus |
3L | 17527336..17527420 | 2008..2092 | 100 | <- | Minus |
3L | 17527483..17527643 | 1847..2007 | 99 | <- | Minus |
3L | 17527706..17528620 | 932..1846 | 100 | <- | Minus |
3L | 17528909..17529839 | 1..931 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 17518433..17520380 | 2093..4040 | 100 | <- | Minus |
arm_3L | 17520436..17520520 | 2008..2092 | 100 | <- | Minus |
arm_3L | 17520583..17520743 | 1847..2007 | 99 | <- | Minus |
arm_3L | 17520806..17521720 | 932..1846 | 100 | <- | Minus |
arm_3L | 17522009..17522939 | 1..931 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17518433..17520380 | 2093..4040 | 100 | <- | Minus |
3L | 17520436..17520520 | 2008..2092 | 100 | <- | Minus |
3L | 17520583..17520743 | 1847..2007 | 99 | <- | Minus |
3L | 17520806..17521720 | 932..1846 | 100 | <- | Minus |
3L | 17522009..17522939 | 1..931 | 100 | Minus |
Translation from 371 to 2413
> LD04327.hyp MGPTDQDWIGCAVSIACDEVLGVFQGLIKQISAEEITIVRAFRNGVPLRK QNAEVVLKCTDIRSIDLIEPAKQDLDGHTAPPPVVNKPTPVKLPHFSNIL GKQQQLQLQQQQQQLQLQQQQKQQFQEQEREQDLPSTPRSRANDNGRVAA GGASSSSGPRGNFNSALSDKMHQLKLIETNGSNGTLRTPQTSRASSAQQQ PQISTTPNSVAAFFGNMIPPKVEVKLGSYVSNTRESYCSSSGDSGEATGL SLGSSKPIDIVSNGDGFYKQTAASSYGNTNGNVRRNGNANNNGNGTGNGS YTNGNGNGNGKNKRNRVRRESSMRQQQVQLTFGSEADDPLIHEDFDFEGN LALFDKQAIWDDIESTTQKPDVVRHIVNNHHHKPEQKYRHDENILASKPL QLRQIESMFGGSQDFVTDDGLIIPTIPAYVRNKIEISADKAGLSLQRQID ILARGASDLAITLLGGARRLTPANNHQWPKIAIICDGGKNMRTINIGAAT GRQLASHGLTVLLYVEQAKLLEQNSSSPEISLFKATDNVIVHSVDALPTP DLVILSTNTANLSDAIRKWLSVNRASVLAIDPPPCGINEVAIKYSILPIL PLNGISTATTSSSSSAAATPTPIASTSAAASATKSAASTNNCGKLYLCNL GIPDKFYRDCGIKYKSPYGHKYVIPIHSKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Edc3-PB | 680 | CG6311-PB | 1..680 | 1..680 | 3505 | 100 | Plus |
Translation from 371 to 2413
> LD04327.pep MGPTDQDWIGCAVSIACDEVLGVFQGLIKQISAEEITIVRAFRNGVPLRK QNAEVVLKCTDIRSIDLIEPAKQDLDGHTAPPPVVNKPTPVKLPHFSNIL GKQQQLQLQQQQQQLQLQQQQKQQFQEQEREQDLPSTPRSRANDNGRVAA GGASSSSGPRGNFNSALSDKMHQLKLIETNGSNGTLRTPQTSRASSAQQQ PQISTTPNSVAAFFGNMIPPKVEVKLGSYVSNTRESYCSSSGDSGEATGL SLGSSKPIDIVSNGDGFYKQTAASSYGNTNGNVRRNGNANNNGNGTGNGS YTNGNGNGNGKNKRNRVRRESSMRQQQVQLTFGSEADDPLIHEDFDFEGN LALFDKQAIWDDIESTTQKPDVVRHIVNNHHHKPEQKYRHDENILASKPL QLRQIESMFGGSQDFVTDDGLIIPTIPAYVRNKIEISADKAGLSLQRQID ILARGASDLAITLLGGARRLTPANNHQWPKIAIICDGGKNMRTINIGAAT GRQLASHGLTVLLYVEQAKLLEQNSSSPEISLFKATDNVIVHSVDALPTP DLVILSTNTANLSDAIRKWLSVNRASVLAIDPPPCGINEVAIKYSILPIL PLNGISTATTSSSSSAAATPTPIASTSAAASATKSAASTNNCGKLYLCNL GIPDKFYRDCGIKYKSPYGHKYVIPIHSKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23907-PA | 661 | GF23907-PA | 1..661 | 1..680 | 2439 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15804-PA | 669 | GG15804-PA | 1..669 | 1..680 | 2848 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15355-PA | 683 | GH15355-PA | 1..683 | 1..680 | 2137 | 68.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Edc3-PB | 680 | CG6311-PB | 1..680 | 1..680 | 3505 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12959-PA | 649 | GI12959-PA | 1..649 | 1..680 | 2120 | 64.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11915-PA | 655 | GL11915-PA | 1..655 | 1..654 | 1935 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19506-PA | 685 | GA19506-PA | 1..685 | 1..680 | 2254 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24326-PA | 676 | GM24326-PA | 1..676 | 1..680 | 3427 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12399-PA | 676 | GD12399-PA | 1..676 | 1..680 | 3452 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13102-PA | 653 | GJ13102-PA | 1..653 | 1..680 | 2221 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18045-PA | 751 | GK18045-PA | 1..751 | 1..680 | 2129 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22142-PA | 674 | GE22142-PA | 1..674 | 1..680 | 2896 | 91.9 | Plus |