Clone LD04329 Report

Search the DGRC for LD04329

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:43
Well:29
Vector:pBS SK-
Associated Gene/Transcriptheph-RH
Protein status:LD04329.pep: gold
Sequenced Size:3503

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
heph 2008-04-29 Release 5.5 accounting
heph 2008-04-29 Picked prior to 5.5
heph 2008-08-15 Release 5.9 accounting
heph 2008-12-18 5.12 accounting

Clone Sequence Records

LD04329.complete Sequence

3503 bp assembled on 2007-09-19

GenBank Submission: BT030984

> LD04329.complete
CGGAAAGAGAGCGGCTCGAGTTAAACATTTGCTCGTAGCGTGCAGCGTGC
AACTTCCTTTGGTGGTGCGATCACCTGGTTCGCGAAGAAACGACGATAAG
TGAATAAATTATCAACGTGTGCAAATCAAACTCGAATTTAAACGGATAAC
AACGAAATCAATTGAGCAAGCTTCCATACCCGGTTGCTTACCGATTTGTA
AGTTTGCACTACGAGGAAAAAGAAAACGTAGCGACCATGATGTCCTGCCC
CATTCCCATGCCAATGCCAATTTCTTCATTACACAAATCAGAATTTGAAC
CGGTTAATATTGGAGTTAAGCAAATGCAATTGTTGCACGCACCGGCGTCC
ACGCATCCGCATCCACATCCGCATCAGCATCCGCAGCATTCGGCAGCGTC
AGCCGCCGCCTATCAGGCCATGCAGGTGCACCAGCAGCAACACCAACAGC
AACAGCAGGCGGCCGTCTTTCACCACCAGGTTGCAGCCATTGCCGCCCAG
CAGCAACAACAGCAACAGCAGGCCCAAGTGCAGCATCAGCAACAAATGCA
GCAGCAGTTCCACTACCAAGCCCAGGCTCAAGCTCAAGCGCAGGCCATGC
TGCAGACGTATATGCAACTTCAGGTGAACAGTGCTGTAGGTGTGAGCACC
GCCCCCGCCACGCCTACCAAACCGGTAGCCGCCCAGATTCCGGGCGCGAT
CTCCGGACCGATTGCGGGTCCGGTTCCTGTATCTGTGCCGACACAGTTCT
TCACGGCGCCGAGCACTCCATTGACCATCATTCCGGCGGCGGCGGTGGCC
TCGTCGGCCATGTTCGCTACCGCGGCCACGCCCACTTCGGCGGCCACCAC
TCCGACCAATAATCGCGGAAGCGACGAACTTTTGAGTCAAGCAGCGGTCA
TGGCGCCCGCTTCCGACAATAACAATCAGGACCTGGCCACAAAGAAGGCC
AAACTGGAGCCGGGCACTGTGCTGGCCGGCGGAATTGCCAAGGCCTCAAA
AGTCATCCACTTGCGCAACATTCCGAACGAGTCCGGCGAGGCAGATGTGA
TTGCCCTGGGCATTCCGTTTGGACGTGTGACCAACGTGCTGGTGCTCAAG
GGCAAGAACCAGGCTTTCATCGAGATGGCCGACGAGATCTCCGCAACGTC
AATGGTGTCCTGTTACACAGTAACTCCGCCCCAGATGCGCGGCCGCATGG
TCTACGTGCAGTTTTCTAATCATCGCGAACTAAAGACGGACCAAGGTCAC
AACAACTCGACCGCCCATAGCGACTACAGCGTCCAGTCCCCGGCGAGCGG
ATCGCCTCTGCCCCTTAGCGCCGCTGCCAACGCGACCAGCAACAATGCAA
ACAGCTCAAGCGACAGCAACAGCGCCATGGGAATCTTACAAAACACAAGC
GCCGTCAATGCGGGCGGCAACACCAACGCTGCCGGGGGACCCAATACTGT
GCTCCGTGTGATTGTCGAGTCCTTGATGTACCCCGTCTCGCTGGACATAC
TGCACCAGATCTTCCAGCGCTACGGCAAGGTGCTGAAGATTGTCACCTTC
ACAAAGAACAATTCATTCCAGGCCCTCATCCAATATCCGGACGCCAATTC
CGCCCAGCACGCCAAGTCGCTCCTGGACGGGCAGAATATATACAACGGTT
GCTGCACGTTGCGTATTGATAACAGCAAGCTGACGGCTCTGAATGTTAAG
TACAACAACGACAAATCGCGCGACTTCACTAACCCCGCTCTGCCACCTGG
TGAACCGGGAGTGGATATCATGCCCACCGCCGGCGGACTGATGAACACCA
ATGATTTGCTTTTGATCGCCGCCCGTCAGCGACCTTCTCTCTCAGGTGAT
AAAATAGTCAACGGCCTGGGCGCCCCCGGAGTCCTGCCGCCCTTTGCCTT
GGGCCTGGGCACTCCACTGACCGGTGGATACAACAACGCACTGCCCAACT
TAGCAGCTTTCTCGCTGGCCAACAGTGGCGCCCTGCAGACGACCGCTCCT
GCAATGCGAGGTTACTCGAATGTCTTGCTTGTCTCGAATTTAAATGAGGA
GATGGTCACGCCTGATGCTCTCTTTACCCTTTTTGGTGTATACGGCGATG
TGCAACGTGTAAAGATTCTGTACAACAAGAAGGACTCGGCACTCATACAA
ATGGCGGAGCCCCAGCAAGCTTATTTGGCCATGTCTCACCTTGATAAATT
ACGTTTATGGGGAAAGCCGATACGTGTGATGGCAAGCAAACACCAGGCCG
TCCAGCTGCCCAAGGAGGGACAGCCGGACGCAGGACTCACACGTGACTAC
TCGCAAAATCCGTTGCACCGCTTCAAGAAACCGGGAAGCAAGAACTACCA
GAACATCTATCCGCCGTCGGCGACACTACATTTAAGCAACATTCCCTCAT
CCTGCTCTGAGGATGACATCAAAGAAGCTTTCACCTCAAACAGCTTTGAA
GTTAAGGCATTCAAATTTTTCCCGAAGGACCGTAAAATGGCACTGCTTCA
ACTGTTGTCCGTGGAGGAGGCTGTCCTAGCACTGATTAAGATGCACAACC
ACCAGCTGTCCGAGTCGAATCACCTGCGTGTAAGCTTCTCGAAGTCGAAC
ATCTAGAATCCGATGCGAAGTCAGGTTTACTGAACCTGACTAGGTACCTC
CGGCGGGTACAGCTACATACAGATGCATCAGCAGCAACACCTTCAGATCC
ATTGGCAGCAACAAATACAAACTATAATCCGTAGTACAAGAAAAATGCAC
GCAAACTTCTACTGAAATGGCAGACTCCAGAAGCACTACCCACCCAATCC
AACATAATAATCAGCAGAAACAATCGATGCAAGAGCTATACCAATTTTAA
ACAATTCAACTCACTCTAAGAACTGTTTTCTGTTCATACACTACCCCTTA
GTGGGAAAGACACAAACAATTAAGGAATCTTACTGAATTGATAAAGAAAA
AACTACAAATAAATATACATGAAAATTACCACGAAAATAGCATTTTAAGT
TATGGCACGCGCAGACAACAAAACAAACAAACAACCCACAAACTAACAAT
CAGCAACATCGTAACTTAAGCTTAACTTTAAACCTATAGTTCGTAAGAAA
CCTGCATTGCATAAAAAAAACAAAACAAAAAATATATGATGAGTAGAGAG
GAGTTAAGTATGTTTAAAGTAAAAAGAGAAAGATCGTAACTTAAAATATT
TTTAGTGCACTGTACTGTGTTTTGGTTTTAAAAAACGACAGAAAGTCAAA
AACATACGAAGGAAGAAATTATGTTAAAAATGAATTAAGGCAATGTTTTA
TTATGTACATGATGCTGTTATTATATTTTAAATGAATGCAACTTAACTTT
AGTTTTTTACAAGTGCGCAATTTCAATTGAAGAAATAGCATACCCGTAGC
TAATAGATGTTTTAATTTAAAAAAGTAAAAAGTAAGAAAGTATTTAGAAA
AACGGTCCCGAATAAACACATCGAGCCCTAATAAAAAAAAAAAAAAAAAA
AAA

LD04329.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
heph-RO 3493 heph-RO 15..3493 1..3479 17395 100 Plus
heph-RH 3493 heph-RH 15..3493 1..3479 17395 100 Plus
heph-RR 3496 heph-RR 95..3496 40..3441 16965 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27673348..27674355 3481..2474 5040 100 Minus
chr3R 27901430 chr3R 27754330..27754874 863..319 2710 99.8 Minus
chr3R 27901430 chr3R 27688502..27688820 1572..1254 1580 99.7 Minus
chr3R 27901430 chr3R 27688135..27688422 1857..1570 1440 100 Minus
chr3R 27901430 chr3R 27696177..27696443 1253..987 1335 100 Minus
chr3R 27901430 chr3R 27674958..27675175 2395..2178 1060 99.1 Minus
chr3R 27901430 chr3R 27687522..27687717 2051..1856 980 100 Minus
chr3R 27901430 chr3R 27704095..27704218 987..864 620 100 Minus
chr3R 27901430 chr3R 27801656..27801760 203..99 525 100 Minus
chr3R 27901430 chr3R 27680262..27680355 2178..2085 470 100 Minus
chr3R 27901430 chr3R 27781225..27781317 320..228 465 100 Minus
chr3R 27901430 chr3R 27674465..27674543 2474..2396 395 100 Minus
chr3R 27901430 chr3R 27804006..27804066 100..40 305 100 Minus
chr3R 27901430 chr3R 27805136..27805196 100..40 305 100 Minus
chr3R 27901430 chr3R 27806265..27806325 100..40 305 100 Minus
chr3R 27901430 chr3R 27802594..27802654 100..40 275 96.7 Minus
chr3R 27901430 chr3R 27803160..27803220 100..40 275 96.7 Minus
chr3R 27901430 chr3R 27804571..27804631 100..40 275 96.7 Minus
chr3R 27901430 chr3R 27802310..27802370 100..40 260 95.1 Minus
chr3R 27901430 chr3R 27803442..27803502 100..40 260 95.1 Minus
chr3R 27901430 chr3R 27805701..27805761 100..40 260 95.1 Minus
chr3R 27901430 chr3R 27802876..27802936 100..40 245 93.4 Minus
chr3R 27901430 chr3R 27803724..27803784 100..40 230 91.8 Minus
chr3R 27901430 chr3R 27804288..27804348 100..40 230 91.8 Minus
chr3R 27901430 chr3R 27805418..27805478 100..40 230 91.8 Minus
chr3R 27901430 chr3R 27805983..27806043 100..40 230 91.8 Minus
chr3R 27901430 chr3R 27807385..27807435 90..40 225 96.1 Minus
chr3R 27901430 chr3R 27804853..27804913 100..40 215 90.2 Minus
chr3R 27901430 chr3R 27807853..27807892 40..1 200 100 Minus
chr3R 27901430 chr3R 27686972..27687009 2087..2050 190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31850980..31851987 3481..2474 5040 100 Minus
3R 32079331 3R 31932072..31932616 863..319 2725 100 Minus
3R 32079331 3R 31866118..31866436 1572..1254 1595 100 Minus
3R 32079331 3R 31865751..31866038 1857..1570 1440 100 Minus
3R 32079331 3R 31873834..31874100 1253..987 1335 100 Minus
3R 32079331 3R 31852592..31852809 2395..2178 1090 100 Minus
3R 32079331 3R 31865132..31865327 2051..1856 980 100 Minus
3R 32079331 3R 31881748..31881871 987..864 620 100 Minus
3R 32079331 3R 31979517..31979621 203..99 525 100 Minus
3R 32079331 3R 31857879..31857972 2178..2085 470 100 Minus
3R 32079331 3R 31959035..31959127 320..228 465 100 Minus
3R 32079331 3R 31852097..31852175 2474..2396 395 100 Minus
3R 32079331 3R 31981867..31981927 100..40 305 100 Minus
3R 32079331 3R 31982997..31983057 100..40 305 100 Minus
3R 32079331 3R 31984126..31984186 100..40 305 100 Minus
3R 32079331 3R 31980455..31980515 100..40 275 96.7 Minus
3R 32079331 3R 31981021..31981081 100..40 275 96.7 Minus
3R 32079331 3R 31982432..31982492 100..40 275 96.7 Minus
3R 32079331 3R 31983562..31983622 100..40 260 95.1 Minus
3R 32079331 3R 31980171..31980231 100..40 260 95.1 Minus
3R 32079331 3R 31981303..31981363 100..40 260 95.1 Minus
3R 32079331 3R 31985242..31985294 92..40 250 98.1 Minus
3R 32079331 3R 31980737..31980797 100..40 245 93.4 Minus
3R 32079331 3R 31981585..31981645 100..40 230 91.8 Minus
3R 32079331 3R 31982149..31982209 100..40 230 91.8 Minus
3R 32079331 3R 31983279..31983339 100..40 230 91.8 Minus
3R 32079331 3R 31983844..31983904 100..40 230 91.8 Minus
3R 32079331 3R 31982714..31982774 100..40 215 90.2 Minus
3R 32079331 3R 31985712..31985751 40..1 200 100 Minus
3R 32079331 3R 31864595..31864632 2087..2050 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31591811..31592818 3481..2474 5040 100 Minus
3R 31820162 3R 31672903..31673447 863..319 2725 100 Minus
3R 31820162 3R 31606949..31607267 1572..1254 1595 100 Minus
3R 31820162 3R 31606582..31606869 1857..1570 1440 100 Minus
3R 31820162 3R 31614665..31614931 1253..987 1335 100 Minus
3R 31820162 3R 31593423..31593640 2395..2178 1090 100 Minus
3R 31820162 3R 31605963..31606158 2051..1856 980 100 Minus
3R 31820162 3R 31622579..31622702 987..864 620 100 Minus
3R 31820162 3R 31720348..31720452 203..99 525 100 Minus
3R 31820162 3R 31598710..31598803 2178..2085 470 100 Minus
3R 31820162 3R 31699866..31699958 320..228 465 100 Minus
3R 31820162 3R 31592928..31593006 2474..2396 395 100 Minus
3R 31820162 3R 31722698..31722758 100..40 305 100 Minus
3R 31820162 3R 31724957..31725017 100..40 305 100 Minus
3R 31820162 3R 31723828..31723888 100..40 305 100 Minus
3R 31820162 3R 31723263..31723323 100..40 275 96.7 Minus
3R 31820162 3R 31721852..31721912 100..40 275 96.7 Minus
3R 31820162 3R 31721286..31721346 100..40 275 96.7 Minus
3R 31820162 3R 31724393..31724453 100..40 260 95 Minus
3R 31820162 3R 31722134..31722194 100..40 260 95 Minus
3R 31820162 3R 31721002..31721062 100..40 260 95 Minus
3R 31820162 3R 31726073..31726125 92..40 250 98.1 Minus
3R 31820162 3R 31721568..31721628 100..40 245 93.4 Minus
3R 31820162 3R 31724675..31724735 100..40 230 91.8 Minus
3R 31820162 3R 31724110..31724170 100..40 230 91.8 Minus
3R 31820162 3R 31722980..31723040 100..40 230 91.8 Minus
3R 31820162 3R 31722416..31722476 100..40 230 91.8 Minus
3R 31820162 3R 31723545..31723605 100..40 215 90.1 Minus
3R 31820162 3R 31726543..31726582 40..1 200 100 Minus
3R 31820162 3R 31605426..31605463 2087..2050 190 100 Minus
3R 31820162 3R 31725246..31725282 92..56 170 97.2 Minus
3R 31820162 3R 31720734..31720779 92..47 170 91.3 Minus
3R 31820162 3R 31710584..31710616 230..198 165 100 Minus
Blast to na_te.dros performed 2019-03-16 22:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6670..6912 309..568 287 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2548 353..571 276 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6942 354..568 275 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2295..2531 326..575 272 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6677..6907 388..623 250 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6891 379..556 234 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2442 429..555 233 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6929 423..624 228 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2438..2713 353..630 225 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2524 428..622 217 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2519 367..587 205 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6956 319..555 205 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2294..2428 416..556 196 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2977 429..592 194 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..7091 319..653 188 56.1 Plus
roo 9092 roo DM_ROO 9092bp 1043..1141 361..458 167 67 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3218..3381 356..517 166 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2872 371..633 159 57.8 Plus
roo 9092 roo DM_ROO 9092bp 1045..1152 348..457 157 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2902 428..556 155 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1645 429..517 154 68.8 Plus
roo 9092 roo DM_ROO 9092bp 1066..1163 353..456 153 66.3 Plus
roo 9092 roo DM_ROO 9092bp 1052..1162 401..521 150 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2339..2530 2659..2843 149 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2845..2989 319..457 143 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2384..2610 353..589 142 57.3 Plus
roo 9092 roo DM_ROO 9092bp 1097..1179 2660..2742 135 65.5 Plus
roo 9092 roo DM_ROO 9092bp 1084..1120 422..458 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2592..2662 391..457 121 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2494 2660..2719 119 71.7 Plus
Tc3 1743 Tc3 TC3 1743bp 43..284 3181..2941 118 52.8 Minus

LD04329.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:08:34 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27687522..27687715 1858..2051 100 <- Minus
chr3R 27680262..27680354 2086..2178 100 <- Minus
chr3R 27686974..27687007 2052..2085 100 <- Minus
chr3R 27673347..27674355 2474..3482 99 <- Minus
chr3R 27674466..27674543 2396..2473 100 <- Minus
chr3R 27674958..27675174 2179..2395 99 <- Minus
chr3R 27688135..27688420 1572..1857 100 <- Minus
chr3R 27688503..27688820 1254..1571 99 <- Minus
chr3R 27696177..27696442 988..1253 100 <- Minus
chr3R 27704095..27704218 864..987 100 <- Minus
chr3R 27754330..27754635 558..863 100 == Minus
chr3R 27754849..27754872 321..344 100 <- Minus
chr3R 27781225..27781317 228..320 100 <- Minus
chr3R 27791918..27791947 198..227 100 <- Minus
chr3R 27801662..27801758 101..197 100 <- Minus
chr3R 27804006..27804065 41..100 100 <- Minus
chr3R 27807853..27807892 1..40 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:45:39 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RR 1..2370 237..2606 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:03:52 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RR 1..2370 237..2606 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:08:44 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RH 1..2370 237..2606 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:49:12 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RH 1..2370 237..2606 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:48 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RH 1..2370 237..2606 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:39 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RO 15..3493 1..3479 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:03:52 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RO 15..3493 1..3479 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:44 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RH 15..3493 1..3479 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:49:12 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RH 15..3466 1..3452 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:48 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RH 18..3496 1..3479 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:34 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31865751..31866036 1572..1857 100 <- Minus
3R 31850979..31851987 2474..3482 99 <- Minus
3R 31852098..31852175 2396..2473 100 <- Minus
3R 31852592..31852808 2179..2395 100 <- Minus
3R 31857879..31857971 2086..2178 100 <- Minus
3R 31864597..31864630 2052..2085 100 <- Minus
3R 31865132..31865325 1858..2051 100 <- Minus
3R 31866119..31866436 1254..1571 100 <- Minus
3R 31873834..31874099 988..1253 100 <- Minus
3R 31881748..31881871 864..987 100 <- Minus
3R 31932072..31932614 321..863 100 <- Minus
3R 31959035..31959127 228..320 100 <- Minus
3R 31969756..31969785 198..227 100 <- Minus
3R 31979523..31979619 101..197 100 <- Minus
3R 31981867..31981926 41..100 100 <- Minus
3R 31985712..31985751 1..40 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:34 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31865751..31866036 1572..1857 100 <- Minus
3R 31850979..31851987 2474..3482 99 <- Minus
3R 31852098..31852175 2396..2473 100 <- Minus
3R 31852592..31852808 2179..2395 100 <- Minus
3R 31857879..31857971 2086..2178 100 <- Minus
3R 31864597..31864630 2052..2085 100 <- Minus
3R 31865132..31865325 1858..2051 100 <- Minus
3R 31866119..31866436 1254..1571 100 <- Minus
3R 31873834..31874099 988..1253 100 <- Minus
3R 31881748..31881871 864..987 100 <- Minus
3R 31932072..31932614 321..863 100 <- Minus
3R 31959035..31959127 228..320 100 <- Minus
3R 31969756..31969785 198..227 100 <- Minus
3R 31979523..31979619 101..197 100 <- Minus
3R 31981867..31981926 41..100 100 <- Minus
3R 31985712..31985751 1..40 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:34 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31865751..31866036 1572..1857 100 <- Minus
3R 31850979..31851987 2474..3482 99 <- Minus
3R 31852098..31852175 2396..2473 100 <- Minus
3R 31852592..31852808 2179..2395 100 <- Minus
3R 31857879..31857971 2086..2178 100 <- Minus
3R 31864597..31864630 2052..2085 100 <- Minus
3R 31865132..31865325 1858..2051 100 <- Minus
3R 31866119..31866436 1254..1571 100 <- Minus
3R 31873834..31874099 988..1253 100 <- Minus
3R 31881748..31881871 864..987 100 <- Minus
3R 31932072..31932614 321..863 100 <- Minus
3R 31959035..31959127 228..320 100 <- Minus
3R 31969756..31969785 198..227 100 <- Minus
3R 31979523..31979619 101..197 100 <- Minus
3R 31981867..31981926 41..100 100 <- Minus
3R 31985712..31985751 1..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:44 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27690854..27691047 1858..2051 100 <- Minus
arm_3R 27683601..27683693 2086..2178 100 <- Minus
arm_3R 27690319..27690352 2052..2085 100 <- Minus
arm_3R 27691473..27691758 1572..1857 100 <- Minus
arm_3R 27691841..27692158 1254..1571 100 <- Minus
arm_3R 27676701..27677709 2474..3482 99 <- Minus
arm_3R 27677820..27677897 2396..2473 100 <- Minus
arm_3R 27678314..27678530 2179..2395 100 <- Minus
arm_3R 27699556..27699821 988..1253 100 <- Minus
arm_3R 27707470..27707593 864..987 100 <- Minus
arm_3R 27757794..27758336 321..863 100 <- Minus
arm_3R 27784757..27784849 228..320 100 <- Minus
arm_3R 27795478..27795507 198..227 100 <- Minus
arm_3R 27805245..27805341 101..197 100 <- Minus
arm_3R 27807589..27807648 41..100 100 <- Minus
arm_3R 27811434..27811473 1..40 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:55:54 Download gff for LD04329.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31591810..31592818 2474..3482 99 <- Minus
3R 31592929..31593006 2396..2473 100 <- Minus
3R 31593423..31593639 2179..2395 100 <- Minus
3R 31598710..31598802 2086..2178 100 <- Minus
3R 31605428..31605461 2052..2085 100 <- Minus
3R 31605963..31606156 1858..2051 100 <- Minus
3R 31606582..31606867 1572..1857 100 <- Minus
3R 31606950..31607267 1254..1571 100 <- Minus
3R 31614665..31614930 988..1253 100 <- Minus
3R 31622579..31622702 864..987 100 <- Minus
3R 31672903..31673445 321..863 100 <- Minus
3R 31699866..31699958 228..320 100 <- Minus
3R 31710587..31710616 198..227 100 <- Minus
3R 31720354..31720450 101..197 100 <- Minus
3R 31722698..31722757 41..100 100 <- Minus
3R 31726543..31726582 1..40 100   Minus

LD04329.pep Sequence

Translation from 236 to 2605

> LD04329.pep
MMSCPIPMPMPISSLHKSEFEPVNIGVKQMQLLHAPASTHPHPHPHQHPQ
HSAASAAAYQAMQVHQQQHQQQQQAAVFHHQVAAIAAQQQQQQQQAQVQH
QQQMQQQFHYQAQAQAQAQAMLQTYMQLQVNSAVGVSTAPATPTKPVAAQ
IPGAISGPIAGPVPVSVPTQFFTAPSTPLTIIPAAAVASSAMFATAATPT
SAATTPTNNRGSDELLSQAAVMAPASDNNNQDLATKKAKLEPGTVLAGGI
AKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADE
ISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQ
SPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAG
GPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQY
PDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNP
ALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGVL
PPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSNVLLVS
NLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMS
HLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPG
SKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRK
MALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI*

LD04329.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17502-PA 835 GF17502-PA 135..835 121..789 2977 84.4 Plus
Dana\GF13176-PA 421 GF13176-PA 188..382 596..784 180 26.1 Plus
Dana\GF13175-PA 97 GF13175-PA 1..89 420..515 178 43.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11844-PA 800 GG11844-PA 1..800 1..789 3256 91.1 Plus
Dere\GG20898-PA 210 GG20898-PA 79..175 402..498 200 41.8 Plus
Dere\GG20899-PA 423 GG20899-PA 190..384 596..784 179 26.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17472-PA 920 GH17472-PA 326..920 198..789 2796 91.2 Plus
Dgri\GH22768-PA 482 GH22768-PA 86..443 402..784 334 27.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
heph-PR 789 CG31000-PR 1..789 1..789 4035 100 Plus
heph-PO 789 CG31000-PO 1..789 1..789 4035 100 Plus
heph-PH 789 CG31000-PH 1..789 1..789 4035 100 Plus
heph-PW 799 CG31000-PW 1..799 1..789 3974 97.8 Plus
heph-PV 608 CG31000-PV 29..608 210..789 2959 100 Plus
heph-PU 581 CG31000-PU 2..581 210..789 2959 100 Plus
heph-PT 581 CG31000-PT 2..581 210..789 2959 100 Plus
heph-PS 581 CG31000-PS 2..581 210..789 2959 100 Plus
heph-PP 608 CG31000-PP 29..608 210..789 2959 100 Plus
heph-PN 608 CG31000-PN 29..608 210..789 2959 100 Plus
heph-PL 622 CG31000-PL 43..622 210..789 2959 100 Plus
heph-PB 608 CG31000-PB 29..608 210..789 2959 100 Plus
heph-PK 608 CG31000-PK 29..608 210..789 2959 100 Plus
heph-PJ 608 CG31000-PJ 29..608 210..789 2959 100 Plus
heph-PI 608 CG31000-PI 29..608 210..789 2959 100 Plus
heph-PE 608 CG31000-PE 29..608 210..789 2959 100 Plus
heph-PD 608 CG31000-PD 29..608 210..789 2959 100 Plus
heph-PC 581 CG31000-PC 2..581 210..789 2959 100 Plus
heph-PA 608 CG31000-PA 29..608 210..789 2959 100 Plus
heph-PF 608 CG31000-PF 29..608 210..789 2959 100 Plus
heph-PG 615 CG31000-PG 36..615 210..789 2959 100 Plus
heph-PY 898 CG31000-PY 217..898 132..789 2927 86.6 Plus
heph-PZ 604 CG31000-PZ 29..604 210..789 2923 99.3 Plus
heph-PM 568 CG31000-PM 1..568 222..789 2904 100 Plus
heph-PQ 493 CG31000-PQ 1..493 297..789 2531 100 Plus
heph-PY 898 CG31000-PY 1..253 1..249 1081 86.6 Plus
sm-PO 494 CG9218-PO 79..452 402..786 348 28.3 Plus
sm-PM 497 CG9218-PM 79..458 402..784 345 28.4 Plus
sm-PZ 491 CG9218-PZ 79..452 402..784 343 27.5 Plus
sm-PL 492 CG9218-PL 79..453 402..784 342 27.5 Plus
sm-PU 515 CG9218-PU 74..476 402..784 342 27.1 Plus
sm-PAA 508 CG9218-PAA 74..469 402..784 341 27.4 Plus
sm-PAB 509 CG9218-PAB 79..470 402..784 336 27.7 Plus
sm-PH 480 CG9218-PH 79..441 402..784 334 27 Plus
sm-PE 475 CG9218-PE 79..436 402..784 327 26.5 Plus
sm-PA 475 CG9218-PA 79..436 402..784 327 26.5 Plus
sm-PV 540 CG9218-PV 79..501 402..784 320 26.6 Plus
sm-PK 535 CG9218-PK 79..496 402..784 319 26.2 Plus
sm-PT 552 CG9218-PT 79..513 402..784 308 25.5 Plus
sm-PP 434 CG9218-PP 6..395 389..784 306 26.4 Plus
Rbfox1-PF 763 CG32062-PF 499..708 40..234 210 35.5 Plus
Rbfox1-PL 858 CG32062-PL 516..725 40..234 210 35.5 Plus
Rbfox1-PE 865 CG32062-PE 499..708 40..234 210 35.5 Plus
Rbfox1-PJ 889 CG32062-PJ 565..774 40..234 210 35.5 Plus
Rbfox1-PK 921 CG32062-PK 579..788 40..234 210 35.5 Plus
Rbfox1-PH 962 CG32062-PH 596..805 40..234 210 35.5 Plus
cpo-PY 606 CG43738-PY 122..411 5..232 190 31.9 Plus
cpo-PX 606 CG43738-PX 122..411 5..232 190 31.9 Plus
cpo-PW 606 CG43738-PW 122..411 5..232 190 31.9 Plus
cpo-PU 606 CG43738-PU 122..411 5..232 190 31.9 Plus
cpo-PN 606 CG43738-PN 122..411 5..232 190 31.9 Plus
cpo-PV 607 CG43738-PV 122..411 5..232 190 31.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22798-PA 834 GI22798-PA 173..834 121..789 2905 86.3 Plus
Dmoj\GI18546-PA 481 GI18546-PA 85..442 402..784 329 27.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24102-PA 494 GL24102-PA 318..494 613..789 924 96 Plus
Dper\GL24102-PA 494 GL24102-PA 44..126 209..291 395 91.6 Plus
Dper\GL11732-PA 102 GL11732-PA 1..89 420..515 178 43.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15927-PA 785 GA15927-PA 124..785 124..789 2869 86.8 Plus
Dpse\GA15927-PB 572 GA15927-PB 1..572 222..789 2754 93 Plus
Dpse\GA30475-PA 498 GA30475-PA 78..459 402..784 331 27.2 Plus
Dpse\GA30475-PB 412 GA30475-PB 179..373 596..784 180 26.1 Plus
Dpse\GA30475-PD 428 GA30475-PD 195..389 596..784 180 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16408-PA 792 GM16408-PA 1..792 1..789 4029 97.4 Plus
Dsec\GM19821-PA 237 GM19821-PA 79..197 402..527 214 38.6 Plus
Dsec\sm-PA 420 GM19822-PA 187..381 596..784 179 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16206-PA 792 GD16206-PA 1..792 1..789 4030 97.4 Plus
Dsim\sm-PA 388 GD25314-PA 79..382 402..716 298 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22800-PA 818 GJ22800-PA 156..818 121..789 3001 86.2 Plus
Dvir\GJ21415-PA 480 GJ21415-PA 85..442 402..784 330 27.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10936-PA 629 GK10936-PA 1..566 222..781 2643 88.9 Plus
Dwil\GK15699-PA 478 GK15699-PA 82..439 402..784 326 27.8 Plus
Dwil\GK10935-PA 229 GK10935-PA 1..55 1..58 199 70 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23291-PA 802 GE23291-PA 1..802 1..789 3916 93.8 Plus
Dyak\GE13838-PA 491 GE13838-PA 79..452 402..784 344 27.5 Plus

LD04329.hyp Sequence

Translation from 236 to 2605

> LD04329.hyp
MMSCPIPMPMPISSLHKSEFEPVNIGVKQMQLLHAPASTHPHPHPHQHPQ
HSAASAAAYQAMQVHQQQHQQQQQAAVFHHQVAAIAAQQQQQQQQAQVQH
QQQMQQQFHYQAQAQAQAQAMLQTYMQLQVNSAVGVSTAPATPTKPVAAQ
IPGAISGPIAGPVPVSVPTQFFTAPSTPLTIIPAAAVASSAMFATAATPT
SAATTPTNNRGSDELLSQAAVMAPASDNNNQDLATKKAKLEPGTVLAGGI
AKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADE
ISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQ
SPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAG
GPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQY
PDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDFTNP
ALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSGDKIVNGLGAPGVL
PPFALGLGTPLTGGYNNALPNLAAFSLANSGALQTTAPAMRGYSNVLLVS
NLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMS
HLDKLRLWGKPIRVMASKHQAVQLPKEGQPDAGLTRDYSQNPLHRFKKPG
SKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFPKDRK
MALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI*

LD04329.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
heph-PR 789 CG31000-PR 1..789 1..789 4035 100 Plus
heph-PO 789 CG31000-PO 1..789 1..789 4035 100 Plus
heph-PH 789 CG31000-PH 1..789 1..789 4035 100 Plus
heph-PW 799 CG31000-PW 1..799 1..789 3974 97.8 Plus
heph-PV 608 CG31000-PV 29..608 210..789 2959 100 Plus