![]() | BDGP Sequence Production Resources |
Search the DGRC for LD04380
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 43 |
Well: | 80 |
Vector: | pBS SK- |
Associated Gene/Transcript | Dd-RA |
Protein status: | LD04380.pep: gold |
Preliminary Size: | 2410 |
Sequenced Size: | 2292 |
Gene | Date | Evidence |
---|---|---|
CG1696 | 2001-01-01 | Release 2 assignment |
CG1696 | 2002-03-19 | Blastp of sequenced clone |
CG1696 | 2003-01-01 | Sim4 clustering to Release 3 |
l(1)G0269 | 2008-04-29 | Release 5.5 accounting |
l(1)G0269 | 2008-08-15 | Release 5.9 accounting |
l(1)G0269 | 2008-12-18 | 5.12 accounting |
2292 bp (2292 high quality bases) assembled on 2002-03-19
GenBank Submission: AY094776
> LD04380.complete AAAACTCATCGATGCTGCGAAAGTGCGATAGTATCGAATAAACATGAGTG TGTGCATGAGTGTGGGAATTTATTAAACAAAAACGAAACGCGGACAAACT ATATTTATGTAATAAACACTAAGCCGCAGCGCCAACGAGTAATGAACAGT CCACGGCCAGGTCGTACTATTCAGGCGAACGCACCTCGCAATCGACTGCA ATCAAAGTGCAATAGCTCAATCAATTGATTCGTTTTGCTCAACCAAAAAC AAAATCTATTCCCAAATCGGTGCGATAGTTGCCAAAATATAAAAACTACA CTACGCTAAAAAAAAAACAATACACTCACACACTGGCGTACAAGACAACA AAAGAGAAGAAGAAGAGCAGACGCCAGATATAAAAAGCCCCCAAAAGAAT TGGAAATAAGACCATACCCCTCCTTCTCCCTTGAAAAGGGACCTTAAAAC TAGGCGACACCGAATAATTGAACTCAAGTAAAAAACCGGGAAAAGAGAAA AACACTTTCAACAAAATATCTAGAAGCCTTGTTATCGATTTTGTTCCGGG TTTTTTTTGTGTGAGTGTGTGTTGTGTGAAGCGCGCCCGCGGGTGTGTGG GTGAGTGTGCGTGTGGCTCTCGGCGCGTTATCAAAAACAACAACAATTCG TTGCAAAAGAAAAAATAAAGTAGAGGAGGCGGAAGAAGAAGAGGAATCTG CTCGCACCGCGGTCAATCGCGGATCGTGGTCGATTTATCGAATTAATCGC CCCGAACAAAAAAAACACCGTACAAGGACTTGCACTATTTCCAATGATTT CGCTGCTGCAAATGAAATTCCGTGCGCTTTTGTTGTTGCTATCAAAAGTA TGGACATGCATTTGTTTCATGTTCAATCGCCAAGTGCGAGCTTTTATCCA GTATCAACCGGTTAAATACGAACTCTTCCCGTTGTCACCCGTCTCGCGGC ACCGCCTGAGCCTGGTGCAGCGCAAGACCCTCGTTCTGGACCTGGACGAA ACGCTAATCCACTCCCATCACAATGCGATGCCCCGGAATACGGTGAAGCC GGGCACGCCGCACGATTTCACTGTCAAAGTGACCATCGATCGGAATCCAG TGCGCTTTTTCGTGCACAAGCGACCGCATGTGGACTACTTCCTGGACGTG GTCTCGCAGTGGTACGATCTGGTGGTCTTCACGGCCAGCATGGAGATTTA CGGAGCGGCGGTGGCAGACAAGCTGGACAACGGACGAAACATCCTCCGGA GGCGATACTACAGACAGCACTGCACGCCCGACTACGGATCCTACACCAAA GACCTGTCGGCCATCTGCAGTGACCTAAATAGGATATTTATCATCGACAA TTCGCCCGGCGCCTATCGCTGTTTTCCCAACAACGCCATACCCATCAAGA GTTGGTTCTCGGACCCGATGGACACGGCGCTGCTGTCGCTGCTGCCCATG CTGGATGCGCTGAGGTTCACGAACGACGTGAGATCGGTGCTGTCGAGGAA CTTGCACCTGCACCGCCTCTGGTAGCAGGTGGGCCGCCTGTCGCTAGTTT AGTTTATCTATTTAGAAGGAGCACTGAGGGCCAGCGAAGTGGGGAGAATA TCTTCTGAAATTAACAACAAACAAGGTGGTGCTGTGACACATTAACGAAT TTGTTCATTATTATTTAAAATTTGTACCATTCAGTCAAATGAGCGGAGAT AAGATGAGACAAACAGATAAAGCAGAAAGTTGAGGATATATTGGGAGATT TGGAAGCGATGGTTTATTTCTCCTTTTGTGTATAGACTAACAGTTTTTTT TTTAACAATCTAATTATGCATACATACTTGTCCATATATGTAGAGACCAG CTATTTTTATTAGACATTTTTTTCGCTTGTTTTTTTGGGTGTATATTTTG ATTATAATATCAAATAAAAACTCTTGAACACAGACAGTATATAGTATAAA GTATATATATACAGTATACAGTATATATATGAATGTAAAGCTGAGCAGAA GGCGAAGCCACAACATAAAGAACAAATTTGTCAAGTTATATATCATATTA TTGTAATTTAAATCTAAGGCCACTTACAACAACAGTCTTGTAATTTCTAT ACCATGATAACAATTAACTATTATGACACTGGAGTTGTTTTTGTGCAGAT ACGAACTAACAAGACGAAGCAAAATACTTATAGTTATACAAATTAGTTAA TTACGAAACTTAACTTGGACATCATTATTATGGATAATTATTAAATATGT AACCGATTCTGTATAGACTTACGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(1)G0269-RA | 3113 | l(1)G0269-RA | 46..2319 | 1..2275 | 11335 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 21185731..21186671 | 2274..1333 | 4660 | 99.9 | Minus |
chrX | 22417052 | chrX | 21188288..21189179 | 892..1 | 4460 | 100 | Minus |
chrX | 22417052 | chrX | 21187060..21187319 | 1152..893 | 1300 | 100 | Minus |
chrX | 22417052 | chrX | 21186794..21186977 | 1333..1150 | 920 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 21320573..21321514 | 2275..1333 | 4665 | 99.9 | Minus |
X | 23542271 | X | 21323131..21324022 | 892..1 | 4460 | 100 | Minus |
X | 23542271 | X | 21321903..21322162 | 1152..893 | 1300 | 100 | Minus |
X | 23542271 | X | 21321637..21321820 | 1333..1150 | 920 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 21305665..21306606 | 2275..1333 | 4675 | 99.8 | Minus |
X | 23527363 | X | 21308223..21309114 | 892..1 | 4460 | 100 | Minus |
X | 23527363 | X | 21306995..21307254 | 1152..893 | 1300 | 100 | Minus |
X | 23527363 | X | 21306729..21306912 | 1333..1150 | 920 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 21186794..21186976 | 1151..1333 | 100 | <- | Minus |
chrX | 21187062..21187319 | 893..1150 | 100 | <- | Minus |
chrX | 21185731..21186670 | 1334..2274 | 95 | <- | Minus |
chrX | 21188288..21189179 | 1..892 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0269-RA | 1..732 | 794..1525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0269-RA | 1..732 | 794..1525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dd-RA | 1..732 | 794..1525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0269-RA | 1..732 | 794..1525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dd-RA | 1..732 | 794..1525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0269-RA | 12..2284 | 1..2274 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0269-RA | 12..2284 | 1..2274 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dd-RA | 1..2260 | 14..2274 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)G0269-RA | 12..2284 | 1..2274 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dd-RA | 1..2260 | 14..2274 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21320574..21321513 | 1334..2274 | 99 | <- | Minus |
X | 21321637..21321819 | 1151..1333 | 100 | <- | Minus |
X | 21321905..21322162 | 893..1150 | 100 | <- | Minus |
X | 21323131..21324022 | 1..892 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21320574..21321513 | 1334..2274 | 99 | <- | Minus |
X | 21321637..21321819 | 1151..1333 | 100 | <- | Minus |
X | 21321905..21322162 | 893..1150 | 100 | <- | Minus |
X | 21323131..21324022 | 1..892 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21320574..21321513 | 1334..2274 | 99 | <- | Minus |
X | 21321637..21321819 | 1151..1333 | 100 | <- | Minus |
X | 21321905..21322162 | 893..1150 | 100 | <- | Minus |
X | 21323131..21324022 | 1..892 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 21191601..21192540 | 1334..2274 | 99 | <- | Minus |
arm_X | 21192664..21192846 | 1151..1333 | 100 | <- | Minus |
arm_X | 21192932..21193189 | 893..1150 | 100 | <- | Minus |
arm_X | 21194158..21195049 | 1..892 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21306997..21307254 | 893..1150 | 100 | <- | Minus |
X | 21305666..21306605 | 1334..2274 | 99 | <- | Minus |
X | 21306729..21306911 | 1151..1333 | 100 | <- | Minus |
X | 21308223..21309114 | 1..892 | 100 | Minus |
Translation from 793 to 1524
> LD04380.pep MISLLQMKFRALLLLLSKVWTCICFMFNRQVRAFIQYQPVKYELFPLSPV SRHRLSLVQRKTLVLDLDETLIHSHHNAMPRNTVKPGTPHDFTVKVTIDR NPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNI LRRRYYRQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIP IKSWFSDPMDTALLSLLPMLDALRFTNDVRSVLSRNLHLHRLW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21841-PA | 218 | GF21841-PA | 1..218 | 26..243 | 1160 | 100 | Plus |
Dana\GF12569-PA | 282 | GF12569-PA | 74..279 | 38..237 | 565 | 55.1 | Plus |
Dana\GF24377-PA | 264 | GF24377-PA | 22..243 | 14..235 | 409 | 42 | Plus |
Dana\GF10364-PA | 329 | GF10364-PA | 83..253 | 54..233 | 355 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17544-PA | 243 | GG17544-PA | 1..243 | 1..243 | 1283 | 99.6 | Plus |
Dere\GG10624-PA | 294 | GG10624-PA | 79..280 | 43..237 | 507 | 53.4 | Plus |
Dere\GG14268-PA | 260 | GG14268-PA | 27..242 | 14..233 | 425 | 45.1 | Plus |
Dere\GG13507-PA | 324 | GG13507-PA | 83..253 | 54..233 | 355 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12888-PA | 243 | GH12888-PA | 1..243 | 1..243 | 1267 | 98.4 | Plus |
Dgri\GH21358-PA | 294 | GH21358-PA | 82..287 | 38..235 | 508 | 49.8 | Plus |
Dgri\GH16757-PA | 341 | GH16757-PA | 76..251 | 47..233 | 353 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dd-PA | 243 | CG1696-PA | 1..243 | 1..243 | 1293 | 100 | Plus |
Dd-PB | 240 | CG1696-PB | 1..240 | 1..243 | 1264 | 98.8 | Plus |
Dd-PC | 182 | CG1696-PC | 1..120 | 1..120 | 632 | 99.2 | Plus |
CG8584-PA | 293 | CG8584-PA | 72..282 | 37..240 | 520 | 50.9 | Plus |
CG12078-PB | 236 | CG12078-PB | 10..227 | 14..235 | 445 | 44.2 | Plus |
CG12078-PA | 253 | CG12078-PA | 27..244 | 14..235 | 445 | 44.2 | Plus |
CG5830-PA | 329 | CG5830-PA | 83..253 | 54..233 | 358 | 43.3 | Plus |
CG5830-PB | 352 | CG5830-PB | 106..276 | 54..233 | 358 | 43.3 | Plus |
Dd-PC | 182 | CG1696-PC | 117..182 | 178..243 | 339 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14442-PA | 243 | GI14442-PA | 1..243 | 1..243 | 1236 | 95.9 | Plus |
Dmoj\GI20773-PA | 313 | GI20773-PA | 75..303 | 27..235 | 503 | 48.5 | Plus |
Dmoj\GI12759-PA | 245 | GI12759-PA | 1..217 | 35..236 | 396 | 42.5 | Plus |
Dmoj\GI13418-PA | 331 | GI13418-PA | 76..251 | 47..233 | 349 | 42.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16570-PA | 175 | GL16570-PA | 32..175 | 100..243 | 756 | 97.9 | Plus |
Dper\GL17365-PA | 286 | GL17365-PA | 93..286 | 54..240 | 497 | 53.8 | Plus |
Dper\GL12819-PA | 333 | GL12819-PA | 83..253 | 54..233 | 357 | 43.3 | Plus |
Dper\GL19342-PA | 274 | GL19342-PA | 47..259 | 42..242 | 346 | 41.9 | Plus |
Dper\GL16570-PA | 175 | GL16570-PA | 1..37 | 1..37 | 166 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14238-PA | 243 | GA14238-PA | 1..243 | 1..243 | 1283 | 99.6 | Plus |
Dpse\GA21180-PA | 286 | GA21180-PA | 93..286 | 54..240 | 504 | 54.4 | Plus |
Dpse\GA19163-PA | 335 | GA19163-PA | 83..253 | 54..233 | 357 | 43.3 | Plus |
Dpse\GA25924-PA | 306 | GA25924-PA | 79..291 | 42..242 | 347 | 41.9 | Plus |
Dpse\GA11549-PA | 388 | GA11549-PA | 190..339 | 62..233 | 146 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22628-PA | 243 | GM22628-PA | 1..243 | 1..243 | 1290 | 100 | Plus |
Dsec\GM20669-PA | 293 | GM20669-PA | 43..282 | 12..240 | 537 | 49 | Plus |
Dsec\GM14061-PA | 253 | GM14061-PA | 25..244 | 21..235 | 458 | 45.1 | Plus |
Dsec\GM24453-PA | 412 | GM24453-PA | 164..334 | 54..233 | 354 | 43.3 | Plus |
Dsec\GM14328-PA | 401 | GM14328-PA | 227..352 | 109..233 | 152 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24432-PA | 139 | GD24432-PA | 1..139 | 26..164 | 742 | 100 | Plus |
Dsim\GD10142-PA | 623 | GD10142-PA | 402..612 | 37..240 | 531 | 51.2 | Plus |
Dsim\GD13336-PA | 253 | GD13336-PA | 20..244 | 16..235 | 441 | 45 | Plus |
Dsim\GD12523-PA | 331 | GD12523-PA | 83..253 | 54..233 | 355 | 43.3 | Plus |
Dsim\GD15269-PA | 212 | GD15269-PA | 43..212 | 12..170 | 322 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18780-PA | 243 | GJ18780-PA | 1..243 | 1..243 | 1266 | 97.5 | Plus |
Dvir\GJ20507-PA | 305 | GJ20507-PA | 96..296 | 42..235 | 521 | 55.4 | Plus |
Dvir\GJ15525-PA | 288 | GJ15525-PA | 48..259 | 35..235 | 374 | 45.3 | Plus |
Dvir\GJ11778-PA | 329 | GJ11778-PA | 75..250 | 47..233 | 353 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16309-PA | 243 | GK16309-PA | 1..243 | 1..243 | 1272 | 98.8 | Plus |
Dwil\GK23052-PA | 275 | GK23052-PA | 58..271 | 30..235 | 508 | 51.4 | Plus |
Dwil\GK23622-PA | 325 | GK23622-PA | 84..254 | 54..233 | 361 | 43.9 | Plus |
Dwil\GK14784-PA | 400 | GK14784-PA | 201..350 | 62..233 | 156 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15304-PA | 243 | GE15304-PA | 1..243 | 1..243 | 1283 | 99.6 | Plus |
Dyak\GE22820-PA | 294 | GE22820-PA | 57..280 | 15..237 | 500 | 47.4 | Plus |
Dyak\GE20696-PA | 260 | GE20696-PA | 41..244 | 32..235 | 410 | 46.1 | Plus |
Dyak\GE23126-PA | 325 | GE23126-PA | 83..253 | 54..233 | 356 | 43.3 | Plus |
Translation from 793 to 1524
> LD04380.hyp MISLLQMKFRALLLLLSKVWTCICFMFNRQVRAFIQYQPVKYELFPLSPV SRHRLSLVQRKTLVLDLDETLIHSHHNAMPRNTVKPGTPHDFTVKVTIDR NPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNI LRRRYYRQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIP IKSWFSDPMDTALLSLLPMLDALRFTNDVRSVLSRNLHLHRLW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dd-PA | 243 | CG1696-PA | 1..243 | 1..243 | 1293 | 100 | Plus |
Dd-PB | 240 | CG1696-PB | 1..240 | 1..243 | 1264 | 98.8 | Plus |
Dd-PC | 182 | CG1696-PC | 1..120 | 1..120 | 632 | 99.2 | Plus |
CG8584-PA | 293 | CG8584-PA | 72..282 | 37..240 | 520 | 50.9 | Plus |
CG12078-PB | 236 | CG12078-PB | 10..227 | 14..235 | 445 | 44.2 | Plus |
Dd-PC | 182 | CG1696-PC | 117..182 | 178..243 | 339 | 97 | Plus |