Clone LD04380 Report

Search the DGRC for LD04380

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:43
Well:80
Vector:pBS SK-
Associated Gene/TranscriptDd-RA
Protein status:LD04380.pep: gold
Preliminary Size:2410
Sequenced Size:2292

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1696 2001-01-01 Release 2 assignment
CG1696 2002-03-19 Blastp of sequenced clone
CG1696 2003-01-01 Sim4 clustering to Release 3
l(1)G0269 2008-04-29 Release 5.5 accounting
l(1)G0269 2008-08-15 Release 5.9 accounting
l(1)G0269 2008-12-18 5.12 accounting

Clone Sequence Records

LD04380.complete Sequence

2292 bp (2292 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094776

> LD04380.complete
AAAACTCATCGATGCTGCGAAAGTGCGATAGTATCGAATAAACATGAGTG
TGTGCATGAGTGTGGGAATTTATTAAACAAAAACGAAACGCGGACAAACT
ATATTTATGTAATAAACACTAAGCCGCAGCGCCAACGAGTAATGAACAGT
CCACGGCCAGGTCGTACTATTCAGGCGAACGCACCTCGCAATCGACTGCA
ATCAAAGTGCAATAGCTCAATCAATTGATTCGTTTTGCTCAACCAAAAAC
AAAATCTATTCCCAAATCGGTGCGATAGTTGCCAAAATATAAAAACTACA
CTACGCTAAAAAAAAAACAATACACTCACACACTGGCGTACAAGACAACA
AAAGAGAAGAAGAAGAGCAGACGCCAGATATAAAAAGCCCCCAAAAGAAT
TGGAAATAAGACCATACCCCTCCTTCTCCCTTGAAAAGGGACCTTAAAAC
TAGGCGACACCGAATAATTGAACTCAAGTAAAAAACCGGGAAAAGAGAAA
AACACTTTCAACAAAATATCTAGAAGCCTTGTTATCGATTTTGTTCCGGG
TTTTTTTTGTGTGAGTGTGTGTTGTGTGAAGCGCGCCCGCGGGTGTGTGG
GTGAGTGTGCGTGTGGCTCTCGGCGCGTTATCAAAAACAACAACAATTCG
TTGCAAAAGAAAAAATAAAGTAGAGGAGGCGGAAGAAGAAGAGGAATCTG
CTCGCACCGCGGTCAATCGCGGATCGTGGTCGATTTATCGAATTAATCGC
CCCGAACAAAAAAAACACCGTACAAGGACTTGCACTATTTCCAATGATTT
CGCTGCTGCAAATGAAATTCCGTGCGCTTTTGTTGTTGCTATCAAAAGTA
TGGACATGCATTTGTTTCATGTTCAATCGCCAAGTGCGAGCTTTTATCCA
GTATCAACCGGTTAAATACGAACTCTTCCCGTTGTCACCCGTCTCGCGGC
ACCGCCTGAGCCTGGTGCAGCGCAAGACCCTCGTTCTGGACCTGGACGAA
ACGCTAATCCACTCCCATCACAATGCGATGCCCCGGAATACGGTGAAGCC
GGGCACGCCGCACGATTTCACTGTCAAAGTGACCATCGATCGGAATCCAG
TGCGCTTTTTCGTGCACAAGCGACCGCATGTGGACTACTTCCTGGACGTG
GTCTCGCAGTGGTACGATCTGGTGGTCTTCACGGCCAGCATGGAGATTTA
CGGAGCGGCGGTGGCAGACAAGCTGGACAACGGACGAAACATCCTCCGGA
GGCGATACTACAGACAGCACTGCACGCCCGACTACGGATCCTACACCAAA
GACCTGTCGGCCATCTGCAGTGACCTAAATAGGATATTTATCATCGACAA
TTCGCCCGGCGCCTATCGCTGTTTTCCCAACAACGCCATACCCATCAAGA
GTTGGTTCTCGGACCCGATGGACACGGCGCTGCTGTCGCTGCTGCCCATG
CTGGATGCGCTGAGGTTCACGAACGACGTGAGATCGGTGCTGTCGAGGAA
CTTGCACCTGCACCGCCTCTGGTAGCAGGTGGGCCGCCTGTCGCTAGTTT
AGTTTATCTATTTAGAAGGAGCACTGAGGGCCAGCGAAGTGGGGAGAATA
TCTTCTGAAATTAACAACAAACAAGGTGGTGCTGTGACACATTAACGAAT
TTGTTCATTATTATTTAAAATTTGTACCATTCAGTCAAATGAGCGGAGAT
AAGATGAGACAAACAGATAAAGCAGAAAGTTGAGGATATATTGGGAGATT
TGGAAGCGATGGTTTATTTCTCCTTTTGTGTATAGACTAACAGTTTTTTT
TTTAACAATCTAATTATGCATACATACTTGTCCATATATGTAGAGACCAG
CTATTTTTATTAGACATTTTTTTCGCTTGTTTTTTTGGGTGTATATTTTG
ATTATAATATCAAATAAAAACTCTTGAACACAGACAGTATATAGTATAAA
GTATATATATACAGTATACAGTATATATATGAATGTAAAGCTGAGCAGAA
GGCGAAGCCACAACATAAAGAACAAATTTGTCAAGTTATATATCATATTA
TTGTAATTTAAATCTAAGGCCACTTACAACAACAGTCTTGTAATTTCTAT
ACCATGATAACAATTAACTATTATGACACTGGAGTTGTTTTTGTGCAGAT
ACGAACTAACAAGACGAAGCAAAATACTTATAGTTATACAAATTAGTTAA
TTACGAAACTTAACTTGGACATCATTATTATGGATAATTATTAAATATGT
AACCGATTCTGTATAGACTTACGTAAAAAAAAAAAAAAAAAA

LD04380.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0269-RA 3113 l(1)G0269-RA 46..2319 1..2275 11335 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21185731..21186671 2274..1333 4660 99.9 Minus
chrX 22417052 chrX 21188288..21189179 892..1 4460 100 Minus
chrX 22417052 chrX 21187060..21187319 1152..893 1300 100 Minus
chrX 22417052 chrX 21186794..21186977 1333..1150 920 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21320573..21321514 2275..1333 4665 99.9 Minus
X 23542271 X 21323131..21324022 892..1 4460 100 Minus
X 23542271 X 21321903..21322162 1152..893 1300 100 Minus
X 23542271 X 21321637..21321820 1333..1150 920 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21305665..21306606 2275..1333 4675 99.8 Minus
X 23527363 X 21308223..21309114 892..1 4460 100 Minus
X 23527363 X 21306995..21307254 1152..893 1300 100 Minus
X 23527363 X 21306729..21306912 1333..1150 920 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:49:28 has no hits.

LD04380.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:50:23 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21186794..21186976 1151..1333 100 <- Minus
chrX 21187062..21187319 893..1150 100 <- Minus
chrX 21185731..21186670 1334..2274 95 <- Minus
chrX 21188288..21189179 1..892 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:34:41 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 1..732 794..1525 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:29:06 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 1..732 794..1525 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:57 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 1..732 794..1525 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:17 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 1..732 794..1525 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:16:01 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 1..732 794..1525 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:30 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 12..2284 1..2274 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:29:06 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 12..2284 1..2274 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:57 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 1..2260 14..2274 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:17 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0269-RA 12..2284 1..2274 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:16:01 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 1..2260 14..2274 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:23 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
X 21320574..21321513 1334..2274 99 <- Minus
X 21321637..21321819 1151..1333 100 <- Minus
X 21321905..21322162 893..1150 100 <- Minus
X 21323131..21324022 1..892 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:23 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
X 21320574..21321513 1334..2274 99 <- Minus
X 21321637..21321819 1151..1333 100 <- Minus
X 21321905..21322162 893..1150 100 <- Minus
X 21323131..21324022 1..892 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:23 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
X 21320574..21321513 1334..2274 99 <- Minus
X 21321637..21321819 1151..1333 100 <- Minus
X 21321905..21322162 893..1150 100 <- Minus
X 21323131..21324022 1..892 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:57 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21191601..21192540 1334..2274 99 <- Minus
arm_X 21192664..21192846 1151..1333 100 <- Minus
arm_X 21192932..21193189 893..1150 100 <- Minus
arm_X 21194158..21195049 1..892 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:46 Download gff for LD04380.complete
Subject Subject Range Query Range Percent Splice Strand
X 21306997..21307254 893..1150 100 <- Minus
X 21305666..21306605 1334..2274 99 <- Minus
X 21306729..21306911 1151..1333 100 <- Minus
X 21308223..21309114 1..892 100   Minus

LD04380.pep Sequence

Translation from 793 to 1524

> LD04380.pep
MISLLQMKFRALLLLLSKVWTCICFMFNRQVRAFIQYQPVKYELFPLSPV
SRHRLSLVQRKTLVLDLDETLIHSHHNAMPRNTVKPGTPHDFTVKVTIDR
NPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNI
LRRRYYRQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIP
IKSWFSDPMDTALLSLLPMLDALRFTNDVRSVLSRNLHLHRLW*

LD04380.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21841-PA 218 GF21841-PA 1..218 26..243 1160 100 Plus
Dana\GF12569-PA 282 GF12569-PA 74..279 38..237 565 55.1 Plus
Dana\GF24377-PA 264 GF24377-PA 22..243 14..235 409 42 Plus
Dana\GF10364-PA 329 GF10364-PA 83..253 54..233 355 43.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17544-PA 243 GG17544-PA 1..243 1..243 1283 99.6 Plus
Dere\GG10624-PA 294 GG10624-PA 79..280 43..237 507 53.4 Plus
Dere\GG14268-PA 260 GG14268-PA 27..242 14..233 425 45.1 Plus
Dere\GG13507-PA 324 GG13507-PA 83..253 54..233 355 43.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12888-PA 243 GH12888-PA 1..243 1..243 1267 98.4 Plus
Dgri\GH21358-PA 294 GH21358-PA 82..287 38..235 508 49.8 Plus
Dgri\GH16757-PA 341 GH16757-PA 76..251 47..233 353 43.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-PA 243 CG1696-PA 1..243 1..243 1293 100 Plus
Dd-PB 240 CG1696-PB 1..240 1..243 1264 98.8 Plus
Dd-PC 182 CG1696-PC 1..120 1..120 632 99.2 Plus
CG8584-PA 293 CG8584-PA 72..282 37..240 520 50.9 Plus
CG12078-PB 236 CG12078-PB 10..227 14..235 445 44.2 Plus
CG12078-PA 253 CG12078-PA 27..244 14..235 445 44.2 Plus
CG5830-PA 329 CG5830-PA 83..253 54..233 358 43.3 Plus
CG5830-PB 352 CG5830-PB 106..276 54..233 358 43.3 Plus
Dd-PC 182 CG1696-PC 117..182 178..243 339 97 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14442-PA 243 GI14442-PA 1..243 1..243 1236 95.9 Plus
Dmoj\GI20773-PA 313 GI20773-PA 75..303 27..235 503 48.5 Plus
Dmoj\GI12759-PA 245 GI12759-PA 1..217 35..236 396 42.5 Plus
Dmoj\GI13418-PA 331 GI13418-PA 76..251 47..233 349 42.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16570-PA 175 GL16570-PA 32..175 100..243 756 97.9 Plus
Dper\GL17365-PA 286 GL17365-PA 93..286 54..240 497 53.8 Plus
Dper\GL12819-PA 333 GL12819-PA 83..253 54..233 357 43.3 Plus
Dper\GL19342-PA 274 GL19342-PA 47..259 42..242 346 41.9 Plus
Dper\GL16570-PA 175 GL16570-PA 1..37 1..37 166 86.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14238-PA 243 GA14238-PA 1..243 1..243 1283 99.6 Plus
Dpse\GA21180-PA 286 GA21180-PA 93..286 54..240 504 54.4 Plus
Dpse\GA19163-PA 335 GA19163-PA 83..253 54..233 357 43.3 Plus
Dpse\GA25924-PA 306 GA25924-PA 79..291 42..242 347 41.9 Plus
Dpse\GA11549-PA 388 GA11549-PA 190..339 62..233 146 30.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22628-PA 243 GM22628-PA 1..243 1..243 1290 100 Plus
Dsec\GM20669-PA 293 GM20669-PA 43..282 12..240 537 49 Plus
Dsec\GM14061-PA 253 GM14061-PA 25..244 21..235 458 45.1 Plus
Dsec\GM24453-PA 412 GM24453-PA 164..334 54..233 354 43.3 Plus
Dsec\GM14328-PA 401 GM14328-PA 227..352 109..233 152 32.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24432-PA 139 GD24432-PA 1..139 26..164 742 100 Plus
Dsim\GD10142-PA 623 GD10142-PA 402..612 37..240 531 51.2 Plus
Dsim\GD13336-PA 253 GD13336-PA 20..244 16..235 441 45 Plus
Dsim\GD12523-PA 331 GD12523-PA 83..253 54..233 355 43.3 Plus
Dsim\GD15269-PA 212 GD15269-PA 43..212 12..170 322 44.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18780-PA 243 GJ18780-PA 1..243 1..243 1266 97.5 Plus
Dvir\GJ20507-PA 305 GJ20507-PA 96..296 42..235 521 55.4 Plus
Dvir\GJ15525-PA 288 GJ15525-PA 48..259 35..235 374 45.3 Plus
Dvir\GJ11778-PA 329 GJ11778-PA 75..250 47..233 353 43.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16309-PA 243 GK16309-PA 1..243 1..243 1272 98.8 Plus
Dwil\GK23052-PA 275 GK23052-PA 58..271 30..235 508 51.4 Plus
Dwil\GK23622-PA 325 GK23622-PA 84..254 54..233 361 43.9 Plus
Dwil\GK14784-PA 400 GK14784-PA 201..350 62..233 156 31.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15304-PA 243 GE15304-PA 1..243 1..243 1283 99.6 Plus
Dyak\GE22820-PA 294 GE22820-PA 57..280 15..237 500 47.4 Plus
Dyak\GE20696-PA 260 GE20696-PA 41..244 32..235 410 46.1 Plus
Dyak\GE23126-PA 325 GE23126-PA 83..253 54..233 356 43.3 Plus

LD04380.hyp Sequence

Translation from 793 to 1524

> LD04380.hyp
MISLLQMKFRALLLLLSKVWTCICFMFNRQVRAFIQYQPVKYELFPLSPV
SRHRLSLVQRKTLVLDLDETLIHSHHNAMPRNTVKPGTPHDFTVKVTIDR
NPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNI
LRRRYYRQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIP
IKSWFSDPMDTALLSLLPMLDALRFTNDVRSVLSRNLHLHRLW*

LD04380.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-PA 243 CG1696-PA 1..243 1..243 1293 100 Plus
Dd-PB 240 CG1696-PB 1..240 1..243 1264 98.8 Plus
Dd-PC 182 CG1696-PC 1..120 1..120 632 99.2 Plus
CG8584-PA 293 CG8584-PA 72..282 37..240 520 50.9 Plus
CG12078-PB 236 CG12078-PB 10..227 14..235 445 44.2 Plus
Dd-PC 182 CG1696-PC 117..182 178..243 339 97 Plus