Clone LD04387 Report

Search the DGRC for LD04387

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:43
Well:87
Vector:pBS SK-
Associated Gene/TranscriptCG7564-RA
Protein status:LD04387.pep: gold
Sequenced Size:1605

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7564 2003-01-01 Sim4 clustering to Release 3
CG7564 2008-04-29 Release 5.5 accounting
CG7564 2008-08-15 Release 5.9 accounting
CG7564 2008-12-18 5.12 accounting

Clone Sequence Records

LD04387.complete Sequence

1605 bp (1605 high quality bases) assembled on 2004-12-02

GenBank Submission: BT021417

> LD04387.complete
CCATTTTAGAACATCCTCACGCACGCACGCACAGAATTTTCTTAGGTGAT
TAAAAGTGAGTGAAAATTGAGAATTTCCACACGCGTCGCACGCTATTGGT
CACAAAGCCAGTGAGATAGCTGTCACTGCCACCGCTGCAGCATTTTTCAC
GCGCTCCTGGCCAGAAGGATATGAGCGCGCCGAGCAACAAAATGTCGGCC
ACCGATCAGATGCGAGCAATGCTGGACCAGCTTATGGGTACCACACGGAA
TGGCGACGAGCGCCAACTGAAATTCTCGGACCCCAGGGTCTGCAAGTCCT
TTCTGCTCGACTGCTGTCCGCACGACATCCTGGCGTCCACGCGCATGGAT
CTCGGTGAGTGTCCCAAAGTGCATGACCTGGCTTTCCGCGCAGATTACGA
AAGTGCCGCCAAGACGCGCGACTACTACTACGACATTGAGGCCATGGAAC
ACCTGCAGGCCTTTATTGCCGACTGCGATCGACGCACCGACTCCGCCAAG
CAAAGGTTGAAAGAGACCCAGGAAGAGCTGACCGCCGAGGTGGCTGAGAA
GGCCAATGCTGTCCATGGCCTCGCCGAGGAGATTGGCAAGAAGTTGGCCA
AGGCCGAGGCCCTGGGCGAGGCCGGCGAAGTGGAGGACAGCATGGAGCTG
ATGAAGGAGATCGAGGAGCTGCGTGCTAAGAAGATCAAGGCCGAGCACGA
GTACCGCACATCTATGCCCGCATCCACCTACCAGCAGCAAAAGTTGCGCG
TCTGCGAGGTATGCTCCGCCTACCTCGGGATTCACGACAATGACATACGT
CTGGCGGACCACTTTGGTGGTAAGTTACATCTCGGATTCCTCACTATCAG
AGAAAAGCTGATCGAACTGGAGAAGACGGCGGCGCCGCGGAAGGCGGAGC
TCAAGCGGACGGGTAAGATGACGGACCGCGAGGACGAGGGACGCGGACGC
AATCGCTACTTTGTAGGTGGTCGTGAACTGGACCGCCGCTCTCGCGTACA
TCGTTCCCGCTCCAGAGAACGACAGCGCAACCGGGATGGGGACCGCGAAC
GCCCCAACAACGGACGCGGTCCTGAGGAGAAGGGGAGTGAGCGACCCAAG
GAAGCGGCAGATGGTCCGGAGCGAGCCGAAAGGGCACCAGATCGTGGAGG
ACGGCGAGATGACAGGGACAACCACGGCAGGGATCATCGCGAACGGGAAC
GCGATGGCAGGCGGGATCGGGACCGACATGGACGCAACGACAGAGGACGC
TTTGGTGACAGAGGCGGCGGTGGAGGAGGCGGTGGCCATCACCGTGACGA
CAGACGCCGCTCAAGGTCCAGGGAACGCTCGCCACGCGAACGGCGGAACT
TTAACCACTTCAGGGATGGTGGTGGCGGCGGAAATGGCCAGCGCAAACGA
TCCTACTCCCGTGAGCGCAACTACCGCCGCTAGGCTAGAATCCCGCCCAG
CGCACGTACGTAGCATTAATCACATGAACTATAATGCCACCACAAATTGA
ACTACTGAAAACAACAGGAACCGAATATTCTTAGCGTAACCAATAAAGCA
ACCTAGAGCCACACTTTCGACGCTCCAATATGAAGATAAAAAAAAAAAAA
AAAAA

LD04387.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7564-RA 1586 CG7564-RA 1..1586 2..1587 7930 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17503825..17505411 1..1587 7920 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17514298..17515885 1..1588 7940 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17507398..17508985 1..1588 7940 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:14:56 has no hits.

LD04387.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:15:56 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17503825..17505411 1..1587 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:34:43 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1263 171..1433 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:24:04 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1263 171..1433 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:06 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1263 171..1433 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:08:49 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1263 171..1433 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:23:55 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RC 1..1263 171..1433 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:26:43 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1581 2..1582 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:24:04 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1586 2..1587 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:06 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1587 1..1587 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:08:49 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1581 2..1582 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:23:55 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
CG7564-RA 1..1587 1..1587 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:56 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17514298..17515884 1..1587 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:56 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17514298..17515884 1..1587 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:56 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17514298..17515884 1..1587 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:06 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17507398..17508984 1..1587 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:44:31 Download gff for LD04387.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17507398..17508984 1..1587 100   Plus

LD04387.pep Sequence

Translation from 170 to 1432

> LD04387.pep
MSAPSNKMSATDQMRAMLDQLMGTTRNGDERQLKFSDPRVCKSFLLDCCP
HDILASTRMDLGECPKVHDLAFRADYESAAKTRDYYYDIEAMEHLQAFIA
DCDRRTDSAKQRLKETQEELTAEVAEKANAVHGLAEEIGKKLAKAEALGE
AGEVEDSMELMKEIEELRAKKIKAEHEYRTSMPASTYQQQKLRVCEVCSA
YLGIHDNDIRLADHFGGKLHLGFLTIREKLIELEKTAAPRKAELKRTGKM
TDREDEGRGRNRYFVGGRELDRRSRVHRSRSRERQRNRDGDRERPNNGRG
PEEKGSERPKEAADGPERAERAPDRGGRRDDRDNHGRDHRERERDGRRDR
DRHGRNDRGRFGDRGGGGGGGGHHRDDRRRSRSRERSPRERRNFNHFRDG
GGGGNGQRKRSYSRERNYRR*

LD04387.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10538-PA 415 GF10538-PA 1..310 8..316 1364 90.1 Plus
Dana\GF21898-PA 450 GF21898-PA 2..159 11..161 216 34.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13623-PA 413 GG13623-PA 1..413 8..420 2058 96.1 Plus
Dere\GG17666-PA 447 GG17666-PA 2..160 11..161 204 32.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16088-PA 432 GH16088-PA 1..329 1..337 1376 85.8 Plus
Dgri\GH24239-PA 457 GH24239-PA 2..190 11..194 188 30.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7564-PD 420 CG7564-PD 1..420 1..420 2221 100 Plus
CG7564-PB 420 CG7564-PB 1..420 1..420 2221 100 Plus
CG7564-PC 420 CG7564-PC 1..420 1..420 2221 100 Plus
CG7564-PA 420 CG7564-PA 1..420 1..420 2221 100 Plus
CG3198-PA 438 CG3198-PA 3..177 12..178 238 32.6 Plus
SF1-PC 323 CG5836-PC 32..179 267..418 167 32.7 Plus
SF1-PB 347 CG5836-PB 32..179 267..418 167 32.7 Plus
SF1-PA 787 CG5836-PA 32..179 267..418 167 32.7 Plus
ncm-PA 1330 CG12750-PA 1164..1327 243..416 164 29.9 Plus
Srp54-PA 513 CG4602-PA 284..417 278..420 160 33.1 Plus
CG3198-PA 438 CG3198-PA 244..438 150..361 158 25.2 Plus
Caper-PB 594 CG11266-PB 58..206 248..420 158 34.1 Plus
Caper-PA 594 CG11266-PA 58..206 248..420 158 34.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12351-PA 422 GI12351-PA 1..272 1..271 1373 95.2 Plus
Dmoj\GI21435-PA 442 GI21435-PA 2..182 11..182 201 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11878-PA 314 GL11878-PA 11..197 139..317 637 81.3 Plus
Dper\GL13371-PA 273 GL13371-PA 2..184 11..186 236 32.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20443-PA 442 GA20443-PA 1..325 1..317 1389 89.5 Plus
Dpse\GA16595-PA 443 GA16595-PA 2..184 11..186 234 32.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25708-PA 412 GM25708-PA 1..412 8..420 2113 99.3 Plus
Dsec\GM12566-PA 437 GM12566-PA 2..160 11..161 196 32.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14714-PA 210 GD14714-PA 1..202 8..209 1080 100 Plus
Dsim\GD16187-PA 349 GD16187-PA 2..160 11..161 199 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12244-PA 361 GJ12244-PA 1..261 8..267 1300 94.3 Plus
Dvir\GJ16453-PA 370 GJ16453-PA 2..182 11..182 193 30.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17748-PA 421 GK17748-PA 1..264 8..271 1337 95.5 Plus
Dwil\GK25344-PA 424 GK25344-PA 2..183 11..181 216 30.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19919-PA 413 GE19919-PA 1..413 8..420 2048 96.1 Plus
Dyak\GE16456-PA 446 GE16456-PA 2..160 11..161 204 32.7 Plus

LD04387.hyp Sequence

Translation from 170 to 1432

> LD04387.hyp
MSAPSNKMSATDQMRAMLDQLMGTTRNGDERQLKFSDPRVCKSFLLDCCP
HDILASTRMDLGECPKVHDLAFRADYESAAKTRDYYYDIEAMEHLQAFIA
DCDRRTDSAKQRLKETQEELTAEVAEKANAVHGLAEEIGKKLAKAEALGE
AGEVEDSMELMKEIEELRAKKIKAEHEYRTSMPASTYQQQKLRVCEVCSA
YLGIHDNDIRLADHFGGKLHLGFLTIREKLIELEKTAAPRKAELKRTGKM
TDREDEGRGRNRYFVGGRELDRRSRVHRSRSRERQRNRDGDRERPNNGRG
PEEKGSERPKEAADGPERAERAPDRGGRRDDRDNHGRDHRERERDGRRDR
DRHGRNDRGRFGDRGGGGGGGGHHRDDRRRSRSRERSPRERRNFNHFRDG
GGGGNGQRKRSYSRERNYRR*

LD04387.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7564-PD 420 CG7564-PD 1..420 1..420 2221 100 Plus
CG7564-PB 420 CG7564-PB 1..420 1..420 2221 100 Plus
CG7564-PC 420 CG7564-PC 1..420 1..420 2221 100 Plus
CG7564-PA 420 CG7564-PA 1..420 1..420 2221 100 Plus
CG3198-PA 438 CG3198-PA 3..177 12..178 238 32.6 Plus