Clone LD04449 Report

Search the DGRC for LD04449

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:44
Well:49
Vector:pBS SK-
Associated Gene/TranscriptHen1-RA
Protein status:LD04449.pep: gold
Preliminary Size:1696
Sequenced Size:1583

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12367 2001-01-01 Release 2 assignment
CG12367 2001-11-09 Blastp of sequenced clone
CG12367 2003-01-01 Sim4 clustering to Release 3
CG12367 2008-04-29 Release 5.5 accounting
CG12367 2008-08-15 Release 5.9 accounting
Pimet 2008-12-18 5.12 accounting

Clone Sequence Records

LD04449.complete Sequence

1583 bp (1583 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069325

> LD04449.complete
CGGATTCCAGTGGTCACTCTAACGATACGGGCAATGTTTTCGCACAAGTT
TATTTGCGGGTCCTTGACCAAAATGACTGAAACCGGCATTACATTCGATC
CGCCGGTGTACGAGCAGCGATATTGCGCCACAATCCAAATTCTGGAGGAC
GCCCGCTGGAAGGATCAGATTAAGAAGGTCGTGGAGTTCGGTTGTGCCGA
GATGCGCTTCTTCCAGCTAATGCGTCGCATTGAGACCATAGAACATATTG
GACTGGTGGACATCGACAAGTCCTTGCTCATGAGAAACTTAACCAGCGTT
AATCCACTGGTTTCCGATTATATACGGAGTCGCGCGAGTCCTCTAAAAGT
TCAAATTCTGCAGGGGAATGTGGCTGATTCTTCGGAAGAATTGAGGGACA
CTGACGCTGTAATCGCAATTGAACTAATCGAGCACGTTTACGACGATGTA
TTGGCCAAAATTCCAGTCAACATTTTTGGTTTCATGCAGCCGAAATTGGT
AGTCTTCAGCACACCAAACTCGGACTTCAACGTTATATTTACGCGGTTCA
ATCCGCTGTTGCCAAATGGTTTTCGCCACGAGGATCACAAGTTCGAGTGG
TCACGCGATGAGTTCAAGAACTGGTGTTTGGGCATTGTGGAGAAGTACCC
GAATTATATGTTTTCCCTAACGGGAGTGGGTAATCCGCCTAAGGAATACG
AGTCGGTGGGCCCCGTTTCACAGATAGCCATATTCGTTCGCAAGGATATG
CTGGAGATGCAGTTGGTTAACCCGTTGGTTAGCAAACCCAATATCGATAA
GGAATCAATTCCCTACAAGCTAATTCATACCGTGGAATATCCTTTTTATG
TGGATACGCGCACCGAGAAGGAAAAGCTCTGGACCGAAGTGCAAATAGAG
CTTCAGCGTTTCAAAAGACAATTCGAATCCTCCGAGATTGAGGAGGGTAC
TTATCAGGACACTTGTAATATGCCTATTGCTTTCTTATTGGATCGCCTAG
AACACGTGGGTGCCACCAAAGAACGTATCGAGGAACTTCTACTGGAAAAT
AACCTAACAGTAGAGAACGAGTGTGTTTTAATAGTTAGTTCCGATCAGGA
ATCGGAATGGTCTGATCCTTACAAGTTTTCTGATCGTTCCTCCCAGGATG
ATGCTTTGGTCGACCAGGAACAAGAGGAGGAACGCTGGGATCAAGGCCCC
GAATCATAAGATACGATACTTAAGACTAGTTTATTTTTAACCAAATTTCT
AACACACTATATTTTGACCAAGGAATAGATTCCTATGTACTCTGTGTGCA
TTATAAATTTCCAAATAATTTTATTAACAATAATGAATTCCAGACAAACC
GAAGATCGATATATAAACTGTAGTCATTATATCTAGGATATAGATTAACT
GACATCAACTAAGCTTAAATTAAACGGTTGTATTTCGATTAAAATCCATA
TTTAAATGTGCCAAGTGTAAGAACTGCAAGCTAATATTGTAATAATCTTG
TTAGAATCTCGTTTTATTAATACTTTTGTGCTATGAATAACATTTGCAAA
TCATCTAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD04449.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pimet-RA 1665 Pimet-RA 46..1603 1..1558 7790 100 Plus
Pimet.a 1372 Pimet.a 70..1372 256..1558 6515 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8038819..8039949 426..1556 5595 99.6 Plus
chr2R 21145070 chr2R 8032929..8033185 1..257 1255 99.2 Plus
chr2R 21145070 chr2R 8038559..8038729 255..425 840 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:50:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12151622..12152754 426..1558 5665 100 Plus
2R 25286936 2R 12145727..12145983 1..257 1285 100 Plus
2R 25286936 2R 12151362..12151532 255..425 855 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12152821..12153953 426..1558 5665 100 Plus
2R 25260384 2R 12146926..12147182 1..257 1285 100 Plus
2R 25260384 2R 12152561..12152731 255..425 855 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:00:25 has no hits.

LD04449.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:01:02 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8032929..8033183 1..255 99 -> Plus
chr2R 8038560..8038729 256..425 99 -> Plus
chr2R 8038819..8039949 426..1556 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:34:45 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
Pimet-RA 1..1176 34..1209 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:57 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 1..1176 34..1209 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:06:45 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 1..1176 34..1209 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:37 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
CG12367-RA 1..1176 34..1209 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:26:25 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 1..1176 34..1209 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:11 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
Pimet-RA 2..1557 1..1556 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:57 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 2..1557 1..1556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:06:45 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 18..1573 1..1556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:38 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
CG12367-RA 2..1557 1..1556 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:26:25 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
Hen1-RA 18..1573 1..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:01:02 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12151363..12151532 256..425 100 -> Plus
2R 12145727..12145981 1..255 100 -> Plus
2R 12151622..12152752 426..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:01:02 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12151363..12151532 256..425 100 -> Plus
2R 12145727..12145981 1..255 100 -> Plus
2R 12151622..12152752 426..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:01:02 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12151363..12151532 256..425 100 -> Plus
2R 12145727..12145981 1..255 100 -> Plus
2R 12151622..12152752 426..1556 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:45 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8033232..8033486 1..255 100 -> Plus
arm_2R 8038868..8039037 256..425 100 -> Plus
arm_2R 8039127..8040257 426..1556 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:01 Download gff for LD04449.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12146926..12147180 1..255 100 -> Plus
2R 12152562..12152731 256..425 100 -> Plus
2R 12152821..12153951 426..1556 100   Plus

LD04449.hyp Sequence

Translation from 0 to 1208

> LD04449.hyp
RIPVVTLTIRAMFSHKFICGSLTKMTETGITFDPPVYEQRYCATIQILED
ARWKDQIKKVVEFGCAEMRFFQLMRRIETIEHIGLVDIDKSLLMRNLTSV
NPLVSDYIRSRASPLKVQILQGNVADSSEELRDTDAVIAIELIEHVYDDV
LAKIPVNIFGFMQPKLVVFSTPNSDFNVIFTRFNPLLPNGFRHEDHKFEW
SRDEFKNWCLGIVEKYPNYMFSLTGVGNPPKEYESVGPVSQIAIFVRKDM
LEMQLVNPLVSKPNIDKESIPYKLIHTVEYPFYVDTRTEKEKLWTEVQIE
LQRFKRQFESSEIEEGTYQDTCNMPIAFLLDRLEHVGATKERIEELLLEN
NLTVENECVLIVSSDQESEWSDPYKFSDRSSQDDALVDQEQEEERWDQGP
ES*

LD04449.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
Hen1-PA 391 CG12367-PA 1..391 12..402 2049 100 Plus

LD04449.pep Sequence

Translation from 33 to 1208

> LD04449.pep
MFSHKFICGSLTKMTETGITFDPPVYEQRYCATIQILEDARWKDQIKKVV
EFGCAEMRFFQLMRRIETIEHIGLVDIDKSLLMRNLTSVNPLVSDYIRSR
ASPLKVQILQGNVADSSEELRDTDAVIAIELIEHVYDDVLAKIPVNIFGF
MQPKLVVFSTPNSDFNVIFTRFNPLLPNGFRHEDHKFEWSRDEFKNWCLG
IVEKYPNYMFSLTGVGNPPKEYESVGPVSQIAIFVRKDMLEMQLVNPLVS
KPNIDKESIPYKLIHTVEYPFYVDTRTEKEKLWTEVQIELQRFKRQFESS
EIEEGTYQDTCNMPIAFLLDRLEHVGATKERIEELLLENNLTVENECVLI
VSSDQESEWSDPYKFSDRSSQDDALVDQEQEEERWDQGPES*

LD04449.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12293-PA 395 GF12293-PA 1..389 1..386 1281 63.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20248-PA 378 GG20248-PA 1..378 14..391 1733 84.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19715-PA 384 GH19715-PA 1..383 1..386 1173 60.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Hen1-PA 391 CG12367-PA 1..391 1..391 2049 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20134-PA 385 GI20134-PA 1..384 1..386 1203 58.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11079-PA 355 GL11079-PA 1..347 1..350 1185 63.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11585-PA 383 GA11585-PA 1..378 1..382 1202 60.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21335-PA 378 GM21335-PA 1..378 14..391 1756 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15398-PA 283 GD15398-PA 1..283 109..391 1255 91.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19904-PA 380 GJ19904-PA 1..349 1..350 1189 63.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23005-PA 385 GK23005-PA 1..385 1..386 1127 54.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12407-PA 378 GE12407-PA 1..378 14..391 1778 87.8 Plus