BDGP Sequence Production Resources |
Search the DGRC for LD04472
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 44 |
Well: | 72 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG6841-RA |
Protein status: | LD04472.pep: gold |
Sequenced Size: | 3398 |
Gene | Date | Evidence |
---|---|---|
CG6841 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6841 | 2004-12-02 | Blastp of sequenced clone |
CG6841 | 2008-04-29 | Release 5.5 accounting |
CG6841 | 2008-08-15 | Release 5.9 accounting |
CG6841 | 2008-12-18 | 5.12 accounting |
3398 bp (3398 high quality bases) assembled on 2004-12-02
GenBank Submission: BT021415
> LD04472.complete CGCACCACGCATTAGAAAACTTTCAATTGTTTGTGAAATTTATTAAATAA AGTAGATAATATTAATATAGAACTAAGCCACGATGTCCAACATAACGGCG GCGGTTATAGCCAACCGCAACAAAAAGCATTTCCTGGGCGTCCCAGCCCC ATTGGGCTATGTTGCCGGCGTCGGTCGTGGAGCGACAGGATTCACCACTC GGTCCGATATTGGTCCTGCCCGTGATGCAAACGATGTATCCGACGACCGC CATGCTCCGCCGGCCACCAAACGTAAGAAAAAAGACGAAGAGGAGGAGGA GGACGAAGACTTGAACGACTCAAACTATGACGAGTTTAGTGGTTACAGCG GCTCCCTGTTCTCCAAGGATCCGTACGACAAGGATGACGAGGAGGCGGAC GCTATCTACGATTCGATAGACAAGCGAATGGACGAAAAGCGCAAAGAGTA TCGTGATCGCCGGCTGCGTGAGGATTTGGAGCGGTACCGCCAGGAGCGAC CGAAGATCCAGCAGCAGTTCAGTGACCTGAAACGCTCACTGGCCAGTGTC ACATCGGAGGAGTGGTCCACGATTCCTGAAGTGGGCGACAGTCGAAACAG AAAGCAACGAAATCCAAGGGCCGAAAAGTTTACCCCTCTGCCGGACAGCT TGATATCCAGAAATCTTGGCGGCGAGTCGTCCTCTACGTTGGATCCGTCC TCGGGCTTGGCTTCTATGGTGCCTGGCGTAGCTACTCCAGGCATGCTGAC ACCTACGGGTGATCTTGATCTGCGAAAGATTGGCCAGGCTCGTAACACTC TTATGAACGTCAAGCTTTCGCAGGTTTCCGATTCCGTGACAGGCCAAACG GTGGTGGATCCCAAGGGCTATCTCACCGACCTGCAGAGTATGATTCCCAC TTATGGTGGTGACATAAACGACATCAAGAAGGCTCGTTTGTTGCTCAAGA GTGTGAGGGAAACGAATCCTAACCATCCACCAGCTTGGATTGCCTCCGCC CGTTTGGAAGAAGTGACTGGCAAGGTTCAGATGGCGAGGAATCTGATAAT GCGGGGCTGCGAAATGAACATCCAGTCTGAGGATCTCTGGCTGGAAGCAG CTCGCCTTCAGCCGCCAGATACAGCCAAAGCGGTGATCGCGCAAGCGGCT CGTCATATTCCTACCTCGGTCAGGATCTGGATTAAAGCCGCAGATCTGGA ATCGGAGACCAAAGCTAAGCGTAGAGTTTTCAGAAAAGCTCTAGAGCATA TTCCAAATTCAGTTCGTCTGTGGAAGGCGGCTGTGGAACTCGAGAATCCT GATGATGCACGGATTCTACTCTCTCGCGCCGTGGAGTGCTGCAACACCAG CGTTGAACTTTGGTTGGCTCTCGCCCGCTTGGAAACCTACGAGAACGCCC GAAAGGTTCTAAACAAGGCTCGCGAGAATATTCCCACTGATCGCCAGATT TGGACCACAGCTGCTAAGTTGGAGGAGGCCAATGGTAATATTCACATGGT GGAAAAGATCATTGATCGATCATTGACCTCGCTTACCGTCAACGGAGTGG AGATCAACCGTGATCAGTGGTTCCAGGAGGCCATCGAGGCGGAAAAATCA GGAGCAGTCAACTGTTGCCAATCCATTGTTAAGGCTGTCATTGGAATAGG AGTGGAGGAGGAGGATCGCAAGCAGACTTGGATTGATGATGCTGAATTCT GCGCAAAGGAAAATGCATTTGAGTGTGCTCGAGCTGTTTACGCTCATGCC CTCCAAATATTTCCCTCGAAGAAAAGCATCTGGTTGCGAGCCGCCTACTT TGAAAAGAACCATGGCACCCGCGAATCTTTGGAGGCCCTGTTGCAGCGAG CCGTGGCTCATTGTCCTAAATCGGAGATTCTCTGGCTGATGGGGGCCAAA TCCAAATGGATGGCTGGAGACGTTCCAGCCGCGAGAGGCATTTTGTCCTT GGCTTTCCAGGCCAATCCCAATTCCGAGGACATTTGGTTGGCTGCCGTTA AGTTGGAATCAGAGAACTCGGAATATGAGCGGGCGAGACGCTTGTTAGCC AAGGCTAGAGGATCGGCACCGACACCAAGGGTGATGATGAAATCAGCTCG CCTGGAATGGGCTTTGGAAAAGTTCGACGAAGCTCTGCGGTTGCTGGAGG AGGCGGTGGAAGTGTTCCCAGATTTCCCCAAACTGTGGATGATGAAGGGT CAGATTGAGGAGCAGCAGAGACGGACAGATGATGCGGCTGCCACCTATAC TCTGGGCTTGAAAAAGTGTCCTACGTCCATCCCACTTTGGATTCTTTCCG CCAATCTAGAAGAGCGCAAAGGAGTGCTGACGAAGGCTCGATCCATTCTG GAACGAGGACGTTTACGCAACCCCAAAGTGGCTGTGCTCTGGCTGGAGGC CATCAGGGTGGAGCTGCGTGCGGGCCTCAAGGAGATTGCCAGCACAATGA TGGCAAGAGCACTGCAGGAATGTCCCAACGCTGGTGAGCTATGGGCGGAG GCTATCTTCATGGAAACCAAGCCGCAGCGAAAGACCAAGTCAGTGGATGC TCTCAAGAAATGCGAGCACGATCCACATGTGCTGCTAGCTGTATCAAAAC TGTTCTGGTCTGAGCACAAGTTCTCTAAGTGCCGAGACTGGTTTAATCGA ACTGTCAAGATCGATCCAGATCTAGGTGATGCTTGGGCATATTTCTACAA GTTCGAATTACTCCACGGCACGGAGGCGCAGCAGCAGGAGGTCCTCGATC GGTGCATTTCTGCAGAGCCCACGCACGGCGAGTCCTGGTGTCGGGTCAGC AAGAACATCCAGAACTGGCAGTTCAAGACACCTGAGGTGCTGCGTGCTGT TGTCCGGGAGCTATCCATACCCATCTAAGTTTTAAGTGTGTTTGGATTAA ACGCGTGGAGCCTAGCGCTGCACTTCTCTATAGCCTTTAATTATGCGATA AACTTGTTTGAAGTGTCTGAAGATAAACTCGAAAAGAAACAGGACAAAAC TGACAGCAGCTCCACACCCAAAGATCCCCAAAGCATACCGGCATTCTGTA ATGCCAATGGAGACAAATCCGCCAACTCCGCCCTCGCATTTGGGCTTCTG AGGAATCCACTTTCGCTCCTCGCGATTCACCAAGCTTACTTCTCGCTGCC AGCGTAGTCTGTGGGTTAAAACAAAGTGTTTTATGATTTCCTCTTTTCGA ACAAGTTATTGAATTGTAAATTATAAAAGGGTTTTTATCCCTGTAAAATT TTTAATTAGGCATATTTTGATTAGTTACACGTTTAAATTACTATTGGATT TTTAGTATAAAATTTAATAAATTACCTATTTTATTTAAATGTAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6841-RA | 3393 | CG6841-RA | 39..3384 | 1..3346 | 16730 | 100 | Plus |
CG6841.a | 3326 | CG6841.a | 311..3317 | 340..3346 | 15035 | 100 | Plus |
Ir75d-RA | 2168 | Ir75d-RA | 1638..2142 | 3158..2654 | 2525 | 100 | Minus |
CG6841.a | 3326 | CG6841.a | 39..310 | 1..272 | 1360 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 18895289..18896808 | 180..1699 | 7540 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 18896890..18897845 | 1700..2655 | 4735 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 18897917..18898605 | 2654..3342 | 3385 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 18895043..18895222 | 1..180 | 900 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 18905658..18907177 | 180..1699 | 7600 | 100 | Plus |
3L | 28110227 | 3L | 18907259..18908214 | 1700..2655 | 4780 | 100 | Plus |
3L | 28110227 | 3L | 18908286..18908978 | 2654..3346 | 3465 | 100 | Plus |
3L | 28110227 | 3L | 18905412..18905591 | 1..180 | 900 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18898758..18900277 | 180..1699 | 7600 | 100 | Plus |
3L | 28103327 | 3L | 18900359..18901314 | 1700..2655 | 4780 | 100 | Plus |
3L | 28103327 | 3L | 18901386..18902078 | 2654..3346 | 3465 | 100 | Plus |
3L | 28103327 | 3L | 18898512..18898691 | 1..180 | 900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18895043..18895222 | 1..180 | 100 | -> | Plus |
chr3L | 18895290..18896808 | 181..1699 | 99 | -> | Plus |
chr3L | 18896890..18897843 | 1700..2653 | 99 | -> | Plus |
chr3L | 18897917..18898558 | 2654..3295 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 1..2796 | 83..2878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 1..2796 | 83..2878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 1..2796 | 83..2878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 1..2796 | 83..2878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 1..2796 | 83..2878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 39..3380 | 1..3342 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 39..3380 | 1..3342 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 41..3309 | 1..3269 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RA | 39..3380 | 1..3342 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6841-RB | 41..3382 | 1..3342 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18905412..18905591 | 1..180 | 100 | -> | Plus |
3L | 18905659..18907177 | 181..1699 | 100 | -> | Plus |
3L | 18907259..18908212 | 1700..2653 | 100 | -> | Plus |
3L | 18908286..18908974 | 2654..3342 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18905412..18905591 | 1..180 | 100 | -> | Plus |
3L | 18905659..18907177 | 181..1699 | 100 | -> | Plus |
3L | 18907259..18908212 | 1700..2653 | 100 | -> | Plus |
3L | 18908286..18908974 | 2654..3342 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18905412..18905591 | 1..180 | 100 | -> | Plus |
3L | 18905659..18907177 | 181..1699 | 100 | -> | Plus |
3L | 18907259..18908212 | 1700..2653 | 100 | -> | Plus |
3L | 18908286..18908974 | 2654..3342 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18898512..18898691 | 1..180 | 100 | -> | Plus |
arm_3L | 18898759..18900277 | 181..1699 | 100 | -> | Plus |
arm_3L | 18900359..18901312 | 1700..2653 | 100 | -> | Plus |
arm_3L | 18901386..18902074 | 2654..3342 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18898759..18900277 | 181..1699 | 100 | -> | Plus |
3L | 18900359..18901312 | 1700..2653 | 100 | -> | Plus |
3L | 18901386..18902074 | 2654..3342 | 100 | Plus | |
3L | 18898512..18898691 | 1..180 | 100 | -> | Plus |
Translation from 82 to 2877
> LD04472.pep MSNITAAVIANRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDAN DVSDDRHAPPATKRKKKDEEEEEDEDLNDSNYDEFSGYSGSLFSKDPYDK DDEEADAIYDSIDKRMDEKRKEYRDRRLREDLERYRQERPKIQQQFSDLK RSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKFTPLPDSLISRNLGGESS STLDPSSGLASMVPGVATPGMLTPTGDLDLRKIGQARNTLMNVKLSQVSD SVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPP AWIASARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKA VIAQAARHIPTSVRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAA VELENPDDARILLSRAVECCNTSVELWLALARLETYENARKVLNKARENI PTDRQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEA IEAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECAR AVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVAHCPKSEIL WLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKLESENSEYER ARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFPDFPK LWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLEERKGVLT KARSILERGRLRNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNA GELWAEAIFMETKPQRKTKSVDALKKCEHDPHVLLAVSKLFWSEHKFSKC RDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPTHGE SWCRVSKNIQNWQFKTPEVLRAVVRELSIPI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23653-PA | 931 | GF23653-PA | 1..931 | 1..931 | 4897 | 98.3 | Plus |
Dana\GF22206-PA | 688 | GF22206-PA | 79..554 | 366..778 | 179 | 21.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16015-PA | 931 | GG16015-PA | 1..931 | 1..931 | 4938 | 99.4 | Plus |
Dere\GG12634-PA | 702 | GG12634-PA | 76..554 | 363..778 | 179 | 22 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23803-PA | 900 | GH23803-PA | 2..900 | 33..931 | 4579 | 96.1 | Plus |
Dgri\GH12311-PA | 707 | GH12311-PA | 79..554 | 302..778 | 171 | 22 | Plus |
Dgri\GH12311-PA | 707 | GH12311-PA | 79..422 | 533..852 | 168 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6841-PB | 931 | CG6841-PB | 1..931 | 1..931 | 4824 | 100 | Plus |
CG6841-PA | 931 | CG6841-PA | 1..931 | 1..931 | 4824 | 100 | Plus |
crn-PA | 702 | CG3193-PA | 79..554 | 302..778 | 211 | 22.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13491-PA | 899 | GI13491-PA | 1..899 | 1..931 | 4285 | 88.8 | Plus |
Dmoj\GI21455-PA | 705 | GI21455-PA | 79..422 | 533..852 | 177 | 24.2 | Plus |
Dmoj\GI21455-PA | 705 | GI21455-PA | 79..554 | 302..778 | 161 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21701-PA | 915 | GL21701-PA | 17..914 | 33..930 | 4670 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19898-PA | 931 | GA19898-PA | 1..930 | 1..930 | 4855 | 97.3 | Plus |
Dpse\GA22854-PA | 689 | GA22854-PA | 79..554 | 302..778 | 172 | 21.9 | Plus |
Dpse\GA22854-PA | 689 | GA22854-PA | 79..422 | 533..852 | 162 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15004-PA | 931 | GM15004-PA | 1..931 | 1..931 | 4951 | 99.6 | Plus |
Dsec\GM18901-PA | 702 | GM18901-PA | 76..554 | 363..778 | 183 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14782-PA | 931 | GD14782-PA | 1..931 | 1..931 | 4952 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11852-PA | 931 | GJ11852-PA | 1..931 | 1..931 | 4844 | 96.9 | Plus |
Dvir\GJ16476-PA | 693 | GJ16476-PA | 79..554 | 302..778 | 174 | 22.8 | Plus |
Dvir\GJ16476-PA | 693 | GJ16476-PA | 79..422 | 533..852 | 158 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10384-PA | 931 | GK10384-PA | 1..931 | 1..931 | 4727 | 95.5 | Plus |
Dwil\GK16333-PA | 693 | GK16333-PA | 79..554 | 302..778 | 180 | 22 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19580-PA | 931 | GE19580-PA | 1..931 | 1..931 | 4944 | 99.6 | Plus |
Dyak\GE19576-PA | 433 | GE19576-PA | 1..291 | 1..291 | 1459 | 99.7 | Plus |
Dyak\GE19576-PA | 433 | GE19576-PA | 290..433 | 788..931 | 803 | 97.9 | Plus |
Dyak\GE16963-PA | 702 | GE16963-PA | 76..554 | 363..778 | 177 | 22 | Plus |
Translation from 82 to 2877
> LD04472.hyp MSNITAAVIANRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDAN DVSDDRHAPPATKRKKKDEEEEEDEDLNDSNYDEFSGYSGSLFSKDPYDK DDEEADAIYDSIDKRMDEKRKEYRDRRLREDLERYRQERPKIQQQFSDLK RSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKFTPLPDSLISRNLGGESS STLDPSSGLASMVPGVATPGMLTPTGDLDLRKIGQARNTLMNVKLSQVSD SVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPP AWIASARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKA VIAQAARHIPTSVRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAA VELENPDDARILLSRAVECCNTSVELWLALARLETYENARKVLNKARENI PTDRQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEA IEAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECAR AVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVAHCPKSEIL WLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKLESENSEYER ARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFPDFPK LWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLEERKGVLT KARSILERGRLRNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNA GELWAEAIFMETKPQRKTKSVDALKKCEHDPHVLLAVSKLFWSEHKFSKC RDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPTHGE SWCRVSKNIQNWQFKTPEVLRAVVRELSIPI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6841-PB | 931 | CG6841-PB | 1..931 | 1..931 | 4824 | 100 | Plus |
CG6841-PA | 931 | CG6841-PA | 1..931 | 1..931 | 4824 | 100 | Plus |
crn-PA | 702 | CG3193-PA | 79..554 | 302..778 | 211 | 22.6 | Plus |