Clone LD04601 Report

Search the DGRC for LD04601

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:46
Well:1
Vector:pBS SK-
Associated Gene/TranscriptTop3alpha-RA
Protein status:LD04601.pep: gold
Sequenced Size:3929

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10123 2003-01-01 Sim4 clustering to Release 3
CG10123 2004-07-14 Blastp of sequenced clone
Top3alpha 2008-04-29 Release 5.5 accounting
Top3alpha 2008-08-15 Release 5.9 accounting
Top3alpha 2008-12-18 5.12 accounting

Clone Sequence Records

LD04601.complete Sequence

3929 bp (3929 high quality bases) assembled on 2004-07-14

GenBank Submission: BT015282

> LD04601.complete
CGCGATCAAAAGTTTGTTTTTACTCTACTGCGAATTTATTTGAATGAAAG
CTGTCTTAACATGTTTTCGCCCCGTCGTCGCCTCACACAGAAGATATTGC
GCTAATCCCGGCCAGGCAATGAAGTACTTAAACGTGGCTGAGAAGAACGA
CGCCGCCAAAACGATTGCCGGCCTGCTGTCAAATGGCGCAGCACAAAGGC
GCGAAGGCTACTCGGTGTACAACAAGGTCTTCGATTTCGAGGCCCCTGTG
CGCGGTCAGAATGCCAAAATGGTTATGACCTCCGTATCCGGCCACATGAT
GCAGCTGGCATTCCAGGTGTCTTACAAAAATTGGAGAACGGTGGATCCGC
GCTCTTTATTCGACGCGCCGGTGAAAAAGGGCGTGGGCTCGGATTATGAG
CCTATCAAAAGGACCTTGGAACGCGAGGTGCGCGGCTGTCAGGGATTGAT
TATCTGGACGGATTGCGATCGCGAGGGCGAGAACATTGGCTACGAGATTA
TTGATGTGTGTCGCGCTATCAAACCGAATATTTCGGTTTATCGTGCCACT
TTCTCGGAGATTACCACGGTGGCGGTGCGTCGGGCTCTGCAGCAATTGGG
GCAGCCGGACAAAAGGCAGAGCGATGCAGTGGATGTGCGCACGGAACTGG
ATTTGCGAACTGGTGCCGCCATCACCCGGTTTCAGACAATGCGCCTACAA
CGTCTGTTCCCCGAAAAGATAGCTGATAAGCTCATATCCTATGGAAGCTG
CCAAATTCCCACCCTGGGATTCGTCGCCGAACGGTACAAGGAGATTGAGG
CCTTCGTATCCGAGCCATTTTGGAAGATTAAGGTTCTGCACACAATTGAT
GACTTGACGGTGGAGTTTAATTGGGCCCGAAACCGACTCTTCGATAAGGA
AGCTTGTGAAAACTATTTGCTCCTCTGCCTGGCCGAACCCGATCCTAGAG
CGCTCGTGGAGAGCGTCACCGTTAAGCCCAAACACAAATGGCGCCCAACT
CCGCTGGATACCGTGGAAATGGAGAAGCTTGGCTCGAGGAAACTCAAGCT
ATCTGCCAAGGAGACGATGACAATAGCCGAAAAATTATATACCAAGGGTT
TCATCAGCTATCCCCGTACGGAAACCAACCAGTTCTCCAAGGAGTTCGCT
CTGGCACCACTAGTTGAGATGCAAACGGGTCACCGCGACTGGGGAGCATT
TGCCCAGCGGGTGATTGAGTGGGGACCAAATCCTCGAAACGGTAACAAAT
CGGATCAGGCCCATCCTCCAATTCATCCCACCAAGCTGGCAGAAAACCTG
CAGGGAAACGAGGCGCGAGTGTACGAACTGGTCGTCCGGCACTTCCTCGC
CTGCGTCAGCAAAGATGCAGTCGGCTCCGAAACCCTTGTCCATATCGACA
TTGCCGGTGAGAAGTTCACGGCCAATGGTCTGGTTATTCACGAACGAAAC
TACCTAGATGTTTATGTTTATGACAAGTGGAGTGCCAAGCAGATCCATCA
CTATGAAAACGGGCAGCGTTTTGAGCCCACGGAAGTGTCGCTCCACGAAG
GTGCCACCACTGCCCCGCCCCTGCTGACCGAAGCGGATTTGATTGCACTG
ATGGAAAAGCATGGGATTGGTACAGATGCCACGCACGCTGAGCACATAAA
CACGATCAAGGAACGCGGATACATCGGAGTGCTGGATAAGGGCTTTTTGG
TACCTGGAGTTATTGGAATGGGACTGTATGAGGGATACGATGCCATGGAG
CTGGCCCTTGCCAAGCCACAACTTCGTGCTGAGTTTGAATTGGATCTGAA
ACTAATTTGCCAGGGGCAGAAAGATCCCAAGGTGGTCCTGACCGAACAGA
TAGCCAAGTACAAGCAGGCCTATCAGCAGATTACCGATAAGATTACCGCC
ATGGACGCCAAGATATCGGCTCGCATTAATGAGACACCAGCTGCCAATTC
TGCGGTGCAGGAAGGAGCTGATGGAAGTGCTCCAAGTCACGGCATCATCC
AATCGATCTTCCAGTGCCCTAAGTGCAATGAGGCTCCTCTGGCCCTAAAG
CCAAAGAAGAACCAGCAGGGCTGGTACATTGGCTGCAATAACTTTCCCGA
CTGCAAAAACGCAGTTTGGCTTCCAACGGAGTGCAAGGACGCATCTGTGC
TGGACGAGTGCTGTCCCACCTGTGGCGATGGATACCGGATGCTCAAGTTC
CGCCTGAGCACGCCTTACTATCGCGGGGTATTTGGTACTCCCAGCGGTTG
GTACAAAACCTGCTTGCCCTGCGATAATCTCTTTCGCACCACGTTCAACA
TTAATTTGGACTCGGTTAAGAAAGTGGGAGGCATTGTGGGTGAAGTGCGT
GGTGGAGGAGGGGGTCCAGGCCCAGGACCCGGTGGCGGTGGCTCTGGCAG
AGGAGCCGGCTCTGGTGGATGGAGCAGCGGACCTGGAGGCGGTGGCTCTG
GCGGAGGCGGCGGCTCTGGAGGATGGGGCAGCGGAACTGGAGGCGGTGGC
TCTGGAGGATGGGGCAGCGGAACTGGAGGCGGTGGCTTGGGCGGAGGAAA
GGGCAAGAAACCTGGCGGCGAATCTAAAAAATCAGCTACAAAAAAACCTC
CGAACGAACCCAAACCGAAAAAGACGAAAGAACCGAAAGCGGCACCCAAC
AAAAAGACTAGCAGCAAATCGTCTGGCAGCATACGGAGCTTCTTTACAAG
TGCGGCGCCTACAAATTCCGCCAGCAATGGACTAGATGAGTTTTTCGATA
GTAACGATGGCTTTGAGGACGCCATGTTGGCTGCTGCCGAATCCGTGGAA
TCGAGTAGCCAACCCAAAACCATTAGTATGGTCCCTCTTGATGACGACAT
AGCCGCCGCTTTTGCAGCGGATGATGATGCTGAATTCGAGGCGTTGGTAA
ACGGCGGAACCATGCCCACCGAATCCAATGGGGACCAGCAGCTGGACAAA
AGTCTCTCGGAATGGATAAAGGAGCAGGACAAAGCGGACGAGAGGCCCAT
GCTTTGGGGAACTCGGGAGCGAGCGTCGTTAGGTACTGCTGCTCCCACTC
CTCCTCCGAAACCGGCAGCTAAACGACCGAGATGGGACAGTGTCGAACGG
GATTCCACACCACCCTCTTCGGTTCCGGAATCCGAAACAGTGCTGTGTAC
CGGATGTCAGCAGCCAGCTCGCCAGAACACTGTCCGTAAGAATGGACCCA
ACCTAGGCAGGCTGTACTACAAGTGTCCCAAACCGGATGAGTGCAACTTC
TTTCAGTGGGCTGATGAGCCACCGTCGTCGGCCAAAAGCAAGAATTCCAC
CGGCAGTGCACCACAAAGCACAACATCCTGGGGCTCCAATCGAGTGGTTA
CCCTGCCTAGCATTCAGCAGAGCAACTCACAGCGTGGCCAATCATCTATG
CGATCAAACTCCAGCAGTACTGTCACCATTACTCAAACGAAAACCAAACA
GCAGGAGAGGAATACAGCGACTCCAGGCGACGGAGAGGAGGTGATGTGCA
ACTGTGGGCAGTTGGCTAGCCAGCTGACGGTCCGAAAAGACGGACCAAAC
CAGGGTAGACCCTTTTATGCCTGTCCCACGCGGGAGAAGTCATGCGGTTT
CTTCAAATGGGGAGATGAGGACCAAAACCAAGGTGCTAGCAGCACCTCTT
GGGGCTCGGCTAATCGAAATCCCCCTGGACGCAGTCAGCCCACAGCTATT
ACGTCCGATGGTCCCAAAACGAGACGCTGTGGTCTCTGTCGCAAGGAGGG
ACACACAAGGAACAAGTGTCCACGCAAGGATGAGTTTGATATGTAGTCAA
GCGACGTGGATATTGCCACAGAACGGATGTGGGAAGATGTATTTGTATGT
ACATTGTATAAAGTGAAAATAAAAAAGTTGTTTTTATGAAATAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD04601.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Top3alpha-RA 3961 Top3alpha-RA 46..3941 1..3896 19480 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19498205..19500801 1296..3892 12970 100 Plus
chr2L 23010047 chr2L 19496998..19497632 199..833 3175 100 Plus
chr2L 23010047 chr2L 19497684..19498146 833..1295 2315 100 Plus
chr2L 23010047 chr2L 19496734..19496932 1..199 995 100 Plus
chr2L 23010047 chr2L 19499284..19499364 2429..2509 270 88.9 Plus
chr2L 23010047 chr2L 19499338..19499418 2375..2455 270 88.9 Plus
chr2L 23010047 chr2L 19499362..19499410 2489..2537 230 98 Plus
chr2L 23010047 chr2L 19499398..19499446 2453..2501 230 98 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19499666..19502266 1296..3896 13005 100 Plus
2L 23513712 2L 19498459..19499093 199..833 3175 100 Plus
2L 23513712 2L 19499145..19499607 833..1295 2315 100 Plus
2L 23513712 2L 19498195..19498393 1..199 995 100 Plus
2L 23513712 2L 19500745..19500825 2429..2509 270 88.9 Plus
2L 23513712 2L 19500799..19500879 2375..2455 270 88.9 Plus
2L 23513712 2L 19500823..19500871 2489..2537 230 98 Plus
2L 23513712 2L 19500859..19500907 2453..2501 230 98 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19499666..19502266 1296..3896 13005 100 Plus
2L 23513712 2L 19498459..19499093 199..833 3175 100 Plus
2L 23513712 2L 19499145..19499607 833..1295 2315 100 Plus
2L 23513712 2L 19498195..19498393 1..199 995 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:46:06 has no hits.

LD04601.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:46:54 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19496734..19496932 1..199 100 -> Plus
chr2L 19496999..19497632 200..833 100 -> Plus
chr2L 19497685..19498146 834..1295 100 -> Plus
chr2L 19498205..19499288 1296..2379 100 == Plus
chr2L 19499446..19500801 2537..3892 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:34:53 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 1..3753 44..3796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:39:37 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 1..3753 44..3796 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:18:46 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 1..3753 44..3796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:15:15 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 1..3753 44..3796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:41:23 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 17..3908 1..3892 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:34:53 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 17..3908 1..3892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:39:37 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 28..3919 1..3892 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:18:46 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 17..3908 1..3892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:15:15 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
Top3alpha-RA 28..3919 1..3892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:54 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19498195..19498393 1..199 100 -> Plus
2L 19498460..19499093 200..833 100 -> Plus
2L 19499146..19499607 834..1295 100 -> Plus
2L 19499666..19502262 1296..3892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:54 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19498195..19498393 1..199 100 -> Plus
2L 19498460..19499093 200..833 100 -> Plus
2L 19499146..19499607 834..1295 100 -> Plus
2L 19499666..19502262 1296..3892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:46:54 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19498195..19498393 1..199 100 -> Plus
2L 19498460..19499093 200..833 100 -> Plus
2L 19499146..19499607 834..1295 100 -> Plus
2L 19499666..19502262 1296..3892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:39:37 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19498195..19498393 1..199 100 -> Plus
arm_2L 19498460..19499093 200..833 100 -> Plus
arm_2L 19499146..19499607 834..1295 100 -> Plus
arm_2L 19499666..19502262 1296..3892 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:55:56 Download gff for LD04601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19498460..19499093 200..833 100 -> Plus
2L 19499146..19499607 834..1295 100 -> Plus
2L 19499666..19502262 1296..3892 100   Plus
2L 19498195..19498393 1..199 100 -> Plus

LD04601.pep Sequence

Translation from 43 to 3795

> LD04601.pep
MKAVLTCFRPVVASHRRYCANPGQAMKYLNVAEKNDAAKTIAGLLSNGAA
QRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGHMMQLAFQVSYKNWRTV
DPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIWTDCDREGENIGY
EIIDVCRAIKPNISVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRT
ELDLRTGAAITRFQTMRLQRLFPEKIADKLISYGSCQIPTLGFVAERYKE
IEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPD
PRALVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYT
KGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWGPNPRNG
NKSDQAHPPIHPTKLAENLQGNEARVYELVVRHFLACVSKDAVGSETLVH
IDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYENGQRFEPTEVSL
HEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLDKG
FLVPGVIGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLT
EQIAKYKQAYQQITDKITAMDAKISARINETPAANSAVQEGADGSAPSHG
IIQSIFQCPKCNEAPLALKPKKNQQGWYIGCNNFPDCKNAVWLPTECKDA
SVLDECCPTCGDGYRMLKFRLSTPYYRGVFGTPSGWYKTCLPCDNLFRTT
FNINLDSVKKVGGIVGEVRGGGGGPGPGPGGGGSGRGAGSGGWSSGPGGG
GSGGGGGSGGWGSGTGGGGSGGWGSGTGGGGLGGGKGKKPGGESKKSATK
KPPNEPKPKKTKEPKAAPNKKTSSKSSGSIRSFFTSAAPTNSASNGLDEF
FDSNDGFEDAMLAAAESVESSSQPKTISMVPLDDDIAAAFAADDDAEFEA
LVNGGTMPTESNGDQQLDKSLSEWIKEQDKADERPMLWGTRERASLGTAA
PTPPPKPAAKRPRWDSVERDSTPPSSVPESETVLCTGCQQPARQNTVRKN
GPNLGRLYYKCPKPDECNFFQWADEPPSSAKSKNSTGSAPQSTTSWGSNR
VVTLPSIQQSNSQRGQSSMRSNSSSTVTITQTKTKQQERNTATPGDGEEV
MCNCGQLASQLTVRKDGPNQGRPFYACPTREKSCGFFKWGDEDQNQGASS
TSWGSANRNPPGRSQPTAITSDGPKTRRCGLCRKEGHTRNKCPRKDEFDM
*

LD04601.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14242-PA 1209 GF14242-PA 1..744 26..769 3614 87.9 Plus
Dana\GF20299-PA 878 GF20299-PA 5..612 29..636 960 36 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17682-PA 878 GG17682-PA 5..612 29..636 970 36.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11108-PA 1269 GH11108-PA 1..739 26..767 3447 83.4 Plus
Dgri\GH12112-PA 862 GH12112-PA 5..612 29..636 944 36.1 Plus
Dgri\GH11108-PA 1269 GH11108-PA 1100..1268 1086..1249 408 51.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Top3alpha-PA 1250 CG10123-PA 1..1250 1..1250 6679 100 Plus
Top3beta-PB 875 CG3458-PB 5..612 29..636 934 35.9 Plus
Top3beta-PA 875 CG3458-PA 5..612 29..636 934 35.9 Plus
CG11458-PA 98 CG11458-PA 21..96 770..842 223 59.7 Plus
CG13376-PC 193 CG13376-PC 32..127 770..842 222 52.5 Plus
CG13376-PB 200 CG13376-PB 39..134 770..842 222 52.5 Plus
CG13376-PD 204 CG13376-PD 43..138 770..842 222 52.5 Plus
Fib-PA 344 CG9888-PA 16..110 762..844 215 51.6 Plus
Cpr47Ef-PD 601 CG13214-PD 240..332 762..842 215 55.3 Plus
Cpr47Ef-PC 612 CG13214-PC 240..332 762..842 215 55.3 Plus
TwdlT-PA 286 CG5812-PA 42..152 762..869 214 47.3 Plus
CG13376-PC 193 CG13376-PC 13..110 760..845 210 49.5 Plus
CG13376-PB 200 CG13376-PB 20..117 760..845 210 49.5 Plus
CG13376-PD 204 CG13376-PD 24..121 760..845 210 49.5 Plus
CG10597-PB 200 CG10597-PB 84..160 762..837 209 50.6 Plus
TwdlT-PA 286 CG5812-PA 27..114 762..844 208 55.7 Plus
Fib-PA 344 CG9888-PA 9..87 769..842 206 55.7 Plus
Cpr47Ef-PD 601 CG13214-PD 235..306 772..842 206 56.9 Plus
Cpr47Ef-PD 601 CG13214-PD 448..551 762..853 206 48.1 Plus
Cpr47Ef-PC 612 CG13214-PC 235..306 772..842 206 56.9 Plus
CG13376-PC 193 CG13376-PC 61..157 770..845 205 51.5 Plus
CG13376-PB 200 CG13376-PB 68..164 770..845 205 51.5 Plus
CG13376-PD 204 CG13376-PD 72..168 770..845 205 51.5 Plus
CG5172-PD 172 CG5172-PD 24..105 770..842 205 52.4 Plus
CG10918-PA 183 CG10918-PA 19..180 769..922 205 36.8 Plus
Cpr47Ef-PD 601 CG13214-PD 35..132 772..868 205 45 Plus
Cpr47Ef-PD 601 CG13214-PD 306..401 770..856 205 49 Plus
Cpr47Ef-PC 612 CG13214-PC 35..132 772..868 205 45 Plus
Cpr47Ef-PC 612 CG13214-PC 306..401 770..856 205 49 Plus
CG17108-PA 342 CG17108-PA 217..334 762..848 203 43.2 Plus
CG17108-PA 342 CG17108-PA 97..200 762..849 202 51.9 Plus
Fib-PA 344 CG9888-PA 2..68 773..837 201 59.7 Plus
Cpr47Ef-PC 612 CG13214-PC 448..562 762..853 199 45.2 Plus
Cpr47Ef-PC 612 CG13214-PC 419..526 766..842 198 46.3 Plus
CG17108-PA 342 CG17108-PA 202..294 757..835 197 52.1 Plus
Hrb87F-PE 385 CG12749-PE 242..319 770..839 197 51.3 Plus
Hrb87F-PD 385 CG12749-PD 242..319 770..839 197 51.3 Plus
Hrb87F-PC 385 CG12749-PC 242..319 770..839 197 51.3 Plus
Hrb87F-PA 385 CG12749-PA 242..319 770..839 197 51.3 Plus
Cpr47Ef-PD 601 CG13214-PD 265..371 762..852 196 45.8 Plus
Cpr47Ef-PC 612 CG13214-PC 265..371 762..852 196 45.8 Plus
CG17108-PA 342 CG17108-PA 173..271 762..842 196 49.5 Plus
CG34327-PA 220 CG34327-PA 35..135 762..848 196 48.5 Plus
CG5172-PD 172 CG5172-PD 25..126 762..847 195 46.6 Plus
CG17108-PA 342 CG17108-PA 169..256 761..844 195 53.9 Plus
CG13376-PC 193 CG13376-PC 12..98 777..844 194 53.4 Plus
CG13376-PB 200 CG13376-PB 19..105 777..844 194 53.4 Plus
CG13376-PD 204 CG13376-PD 23..109 777..844 194 53.4 Plus
Cpr47Ef-PC 612 CG13214-PC 352..457 762..838 194 47.2 Plus
lcs-PA 145 CG12794-PA 27..140 770..894 194 40.5 Plus
Cpr47Ef-PD 601 CG13214-PD 264..339 771..842 193 55 Plus
Cpr47Ef-PC 612 CG13214-PC 264..339 771..842 193 55 Plus
CG17108-PA 342 CG17108-PA 150..247 762..842 193 51 Plus
Nopp140-PA 720 CG7421-PA 634..715 759..851 192 48.4 Plus
Nopp140-PE 773 CG7421-PE 687..768 759..851 192 48.4 Plus
Cpr47Ef-PD 601 CG13214-PD 318..404 762..842 191 50.6 Plus
Cpr47Ef-PD 601 CG13214-PD 339..426 762..842 191 48.4 Plus
Cpr47Ef-PC 612 CG13214-PC 339..426 762..842 191 48.4 Plus
Cpr47Ef-PC 612 CG13214-PC 318..404 762..842 191 50.6 Plus
CG4038-PA 237 CG4038-PA 172..236 769..838 191 59.2 Plus
CG13376-PC 193 CG13376-PC 92..190 762..842 190 48.5 Plus
CG13376-PB 200 CG13376-PB 99..197 762..842 190 48.5 Plus
CG13376-PD 204 CG13376-PD 103..201 762..842 190 48.5 Plus
Cpr47Ef-PD 601 CG13214-PD 234..299 775..842 190 58.8 Plus
Cpr47Ef-PD 601 CG13214-PD 352..466 762..842 190 44.3 Plus
Cpr47Ef-PC 612 CG13214-PC 234..299 775..842 190 58.8 Plus
Cpr47Ef-PD 601 CG13214-PD 236..303 791..856 189 58 Plus
Cpr47Ef-PD 601 CG13214-PD 419..515 766..842 189 48.5 Plus
Cpr47Ef-PC 612 CG13214-PC 236..303 791..856 189 58 Plus
Cpr47Ef-PC 612 CG13214-PC 403..497 762..856 189 45.8 Plus
CG17108-PA 342 CG17108-PA 223..331 770..849 189 45.9 Plus
CG12523-PB 250 CG12523-PB 20..110 770..839 189 49.5 Plus
CG12523-PA 250 CG12523-PA 20..110 770..839 189 49.5 Plus
CG11458-PA 98 CG11458-PA 28..97 762..831 187 54.3 Plus
Cpr47Ef-PD 601 CG13214-PD 306..396 762..841 187 53.3 Plus
Cpr47Ef-PD 601 CG13214-PD 403..481 762..841 187 51.2 Plus
Cpr47Ef-PC 612 CG13214-PC 306..396 762..841 187 53.3 Plus
CG5172-PC 106 CG5172-PC 24..92 770..842 187 57.5 Plus
CG11458-PA 98 CG11458-PA 21..92 781..845 185 52.8 Plus
Cpr47Ef-PD 601 CG13214-PD 396..476 763..838 185 51.9 Plus
CG17108-PA 342 CG17108-PA 203..288 765..842 183 50.6 Plus
Hrb87F-PE 385 CG12749-PE 206..304 762..842 183 49 Plus
Hrb87F-PD 385 CG12749-PD 206..304 762..842 183 49 Plus
Hrb87F-PC 385 CG12749-PC 206..304 762..842 183 49 Plus
Hrb87F-PA 385 CG12749-PA 206..304 762..842 183 49 Plus
Cpr47Ef-PD 601 CG13214-PD 46..133 770..853 182 46.1 Plus
Cpr47Ef-PC 612 CG13214-PC 46..133 770..853 182 46.1 Plus
Cpr47Ef-PD 601 CG13214-PD 404..489 762..842 181 49.4 Plus
CG14191-PA 193 CG14191-PA 20..103 780..842 181 52.4 Plus
CG17108-PA 342 CG17108-PA 73..156 763..842 180 54.1 Plus
CG17108-PA 342 CG17108-PA 92..179 762..842 180 52.8 Plus
CG17108-PA 342 CG17108-PA 125..224 762..842 180 50 Plus
CG4038-PA 237 CG4038-PA 4..59 766..837 180 55.6 Plus
CG9757-PB 127 CG9757-PB 51..120 770..842 180 60.3 Plus
CG9757-PA 127 CG9757-PA 51..120 770..842 180 60.3 Plus
Cpr47Ef-PC 612 CG13214-PC 386..462 770..841 179 53.2 Plus
CG9757-PB 127 CG9757-PB 47..126 759..837 179 51.9 Plus
CG9757-PA 127 CG9757-PA 47..126 759..837 179 51.9 Plus
CG14191-PA 193 CG14191-PA 44..143 762..845 179 46 Plus
CG15140-PB 335 CG15140-PB 135..227 761..842 179 49.5 Plus
caz-PD 355 CG3606-PD 180..292 762..842 179 38.9 Plus
caz-PC 384 CG3606-PC 209..321 762..842 179 38.9 Plus
caz-PB 399 CG3606-PB 224..336 762..842 179 38.9 Plus
TwdlT-PA 286 CG5812-PA 26..105 775..844 178 55.6 Plus
CG5172-PD 172 CG5172-PD 42..136 762..849 178 45.3 Plus
Hrb87F-PE 385 CG12749-PE 251..360 762..843 178 39.6 Plus
Hrb87F-PD 385 CG12749-PD 251..360 762..843 178 39.6 Plus
Hrb87F-PC 385 CG12749-PC 251..360 762..843 178 39.6 Plus
Hrb87F-PA 385 CG12749-PA 251..360 762..843 178 39.6 Plus
CG17108-PA 342 CG17108-PA 48..140 756..844 177 48.4 Plus
CG17108-PA 342 CG17108-PA 146..236 761..842 177 52.1 Plus
CG14191-PA 193 CG14191-PA 75..179 757..848 177 45.4 Plus
CG17108-PA 342 CG17108-PA 17..88 766..835 176 54.1 Plus
CG7296-PB 161 CG7296-PB 25..130 752..849 176 43.4 Plus
CG7296-PA 161 CG7296-PA 25..130 752..849 176 43.4 Plus
CG10598-PC 173 CG10598-PC 22..113 761..835 176 46.7 Plus
CG10598-PA 173 CG10598-PA 22..113 761..835 176 46.7 Plus
caz-PD 355 CG3606-PD 169..230 780..840 176 56.5 Plus
caz-PC 384 CG3606-PC 198..259 780..840 176 56.5 Plus
caz-PB 399 CG3606-PB 213..274 780..840 176 56.5 Plus
CG5172-PD 172 CG5172-PD 81..170 762..842 175 45.6 Plus
bel-PA 798 CG9748-PA 94..226 769..883 175 34.6 Plus
bel-PB 801 CG9748-PB 94..226 769..883 175 34.6 Plus
CG17108-PA 342 CG17108-PA 37..124 757..844 174 52.2 Plus
CG12523-PB 250 CG12523-PB 39..152 762..844 174 40.4 Plus
CG12523-PA 250 CG12523-PA 39..152 762..844 174 40.4 Plus
Cpr47Ef-PD 601 CG13214-PD 438..521 771..842 173 49.4 Plus
CG7294-PA 127 CG7294-PA 26..103 770..848 173 49.4 Plus
Cpr47Ef-PD 601 CG13214-PD 382..483 762..852 172 45.2 Plus
Cpr47Ef-PC 612 CG13214-PC 452..604 770..900 172 35.9 Plus
caz-PD 355 CG3606-PD 266..349 770..842 172 48.2 Plus
caz-PC 384 CG3606-PC 295..378 770..842 172 48.2 Plus
caz-PB 399 CG3606-PB 310..393 770..842 172 48.2 Plus
CG5778-PC 117 CG5778-PC 35..104 773..842 171 51.4 Plus
CG5778-PA 117 CG5778-PA 35..104 773..842 171 51.4 Plus
CG34327-PA 220 CG34327-PA 19..106 761..844 170 48.4 Plus
CG14355-PA 1024 CG14355-PA 837..944 771..878 170 39.1 Plus
Cpr47Ef-PC 612 CG13214-PC 382..470 762..842 169 48.9 Plus
CG4038-PA 237 CG4038-PA 113..232 729..835 169 37.5 Plus
CG12523-PB 250 CG12523-PB 79..204 762..854 169 40.2 Plus
CG12523-PA 250 CG12523-PA 79..204 762..854 169 40.2 Plus
CG15140-PB 335 CG15140-PB 127..212 761..842 169 47.1 Plus
CG15140-PB 335 CG15140-PB 159..237 770..842 168 51.9 Plus
CG8157-PB 113 CG8157-PB 36..100 770..831 167 56.9 Plus
CG8157-PA 113 CG8157-PA 36..100 770..831 167 56.9 Plus
CG5172-PC 106 CG5172-PC 24..99 780..855 166 46.2 Plus
CG14191-PA 193 CG14191-PA 22..126 762..844 166 40.6 Plus
CG14742-PA 74 CG14742-PA 1..73 765..836 166 48.1 Plus
CG8157-PB 113 CG8157-PB 25..97 769..837 166 54.7 Plus
CG8157-PA 113 CG8157-PA 25..97 769..837 166 54.7 Plus
CG14191-PA 193 CG14191-PA 85..192 756..847 165 43.1 Plus
caz-PD 355 CG3606-PD 170..279 770..842 165 39.1 Plus
caz-PC 384 CG3606-PC 199..308 770..842 165 39.1 Plus
caz-PB 399 CG3606-PB 214..323 770..842 165 39.1 Plus
Nopp140-PA 720 CG7421-PA 620..715 770..863 164 42.7 Plus
Nopp140-PE 773 CG7421-PE 673..768 770..863 164 42.7 Plus
CG7299-PC 177 CG7299-PC 52..132 766..848 164 50 Plus
CG7299-PA 177 CG7299-PA 52..132 766..848 164 50 Plus
TwdlT-PA 286 CG5812-PA 17..85 779..842 163 52.2 Plus
CG10597-PB 200 CG10597-PB 66..152 770..841 162 46 Plus
CG17108-PA 342 CG17108-PA 273..339 770..835 161 49.3 Plus
CG15597-PB 149 CG15597-PB 20..105 763..839 159 44.1 Plus
CG34327-PA 220 CG34327-PA 68..180 770..844 158 39.8 Plus
CG13376-PC 193 CG13376-PC 118..191 771..830 157 50 Plus
CG13376-PB 200 CG13376-PB 125..198 771..830 157 50 Plus
CG13376-PD 204 CG13376-PD 129..202 771..830 157 50 Plus
CG12523-PB 250 CG12523-PB 66..163 758..837 157 41.8 Plus
CG12523-PA 250 CG12523-PA 66..163 758..837 157 41.8 Plus
CG14742-PA 74 CG14742-PA 2..64 783..848 157 48.5 Plus
CG15597-PB 149 CG15597-PB 6..144 740..841 156 37.5 Plus
CG12998-PB 113 CG12998-PB 54..111 770..831 156 50 Plus
CG7294-PA 127 CG7294-PA 26..119 763..849 155 42.6 Plus
CG14742-PA 74 CG14742-PA 2..74 776..851 155 44.7 Plus
CG34327-PA 220 CG34327-PA 101..212 759..842 154 40 Plus
CG10598-PC 173 CG10598-PC 41..119 762..840 153 46.8 Plus
CG10598-PA 173 CG10598-PA 41..119 762..840 153 46.8 Plus
CG8157-PB 113 CG8157-PB 18..85 775..842 153 52.2 Plus
CG8157-PA 113 CG8157-PA 18..85 775..842 153 52.2 Plus
CG5778-PC 117 CG5778-PC 49..109 769..826 152 52.5 Plus
CG5778-PA 117 CG5778-PA 49..109 769..826 152 52.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18230-PA 1279 GI18230-PA 1..1045 26..1101 3747 68.6 Plus
Dmoj\GI16324-PA 858 GI16324-PA 5..611 29..636 986 36.9 Plus
Dmoj\GI18230-PA 1279 GI18230-PA 1171..1278 1119..1249 322 52.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21219-PA 1178 GL21219-PA 1..1178 26..1250 4504 74 Plus
Dper\GL20281-PA 875 GL20281-PA 5..612 29..636 972 36.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10090-PA 1178 GA10090-PA 1..1178 26..1250 4501 73.8 Plus
Dpse\GA17464-PA 875 GA17464-PA 5..612 29..636 972 36.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17356-PA 1251 GM17356-PA 1..744 26..769 3970 98.1 Plus
Dsec\GM12581-PA 921 GM12581-PA 101..658 78..636 925 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24215-PA 857 GD24215-PA 1..710 26..735 3768 98.3 Plus
Dsim\GD16199-PA 821 GD16199-PA 1..558 78..636 923 36.7 Plus
Dsim\GD24215-PA 857 GD24215-PA 750..857 1143..1250 579 95.4 Plus
Dsim\GD24215-PA 857 GD24215-PA 709..751 1036..1078 214 81.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18138-PA 1355 GJ18138-PA 1..740 26..768 3500 85.2 Plus
Dvir\GJ15664-PA 858 GJ15664-PA 5..611 29..636 946 35.9 Plus
Dvir\GJ18138-PA 1355 GJ18138-PA 1211..1354 1086..1249 376 49.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18189-PA 1234 GK18189-PA 1..741 26..765 3501 85.6 Plus
Dwil\GK10076-PA 884 GK10076-PA 5..612 29..636 975 36.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13263-PA 1229 GE13263-PA 1..744 26..769 3911 95.6 Plus
Dyak\GE16470-PA 878 GE16470-PA 5..612 29..636 962 36 Plus

LD04601.hyp Sequence

Translation from 43 to 3795

> LD04601.hyp
MKAVLTCFRPVVASHRRYCANPGQAMKYLNVAEKNDAAKTIAGLLSNGAA
QRREGYSVYNKVFDFEAPVRGQNAKMVMTSVSGHMMQLAFQVSYKNWRTV
DPRSLFDAPVKKGVGSDYEPIKRTLEREVRGCQGLIIWTDCDREGENIGY
EIIDVCRAIKPNISVYRATFSEITTVAVRRALQQLGQPDKRQSDAVDVRT
ELDLRTGAAITRFQTMRLQRLFPEKIADKLISYGSCQIPTLGFVAERYKE
IEAFVSEPFWKIKVLHTIDDLTVEFNWARNRLFDKEACENYLLLCLAEPD
PRALVESVTVKPKHKWRPTPLDTVEMEKLGSRKLKLSAKETMTIAEKLYT
KGFISYPRTETNQFSKEFALAPLVEMQTGHRDWGAFAQRVIEWGPNPRNG
NKSDQAHPPIHPTKLAENLQGNEARVYELVVRHFLACVSKDAVGSETLVH
IDIAGEKFTANGLVIHERNYLDVYVYDKWSAKQIHHYENGQRFEPTEVSL
HEGATTAPPLLTEADLIALMEKHGIGTDATHAEHINTIKERGYIGVLDKG
FLVPGVIGMGLYEGYDAMELALAKPQLRAEFELDLKLICQGQKDPKVVLT
EQIAKYKQAYQQITDKITAMDAKISARINETPAANSAVQEGADGSAPSHG
IIQSIFQCPKCNEAPLALKPKKNQQGWYIGCNNFPDCKNAVWLPTECKDA
SVLDECCPTCGDGYRMLKFRLSTPYYRGVFGTPSGWYKTCLPCDNLFRTT
FNINLDSVKKVGGIVGEVRGGGGGPGPGPGGGGSGRGAGSGGWSSGPGGG
GSGGGGGSGGWGSGTGGGGSGGWGSGTGGGGLGGGKGKKPGGESKKSATK
KPPNEPKPKKTKEPKAAPNKKTSSKSSGSIRSFFTSAAPTNSASNGLDEF
FDSNDGFEDAMLAAAESVESSSQPKTISMVPLDDDIAAAFAADDDAEFEA
LVNGGTMPTESNGDQQLDKSLSEWIKEQDKADERPMLWGTRERASLGTAA
PTPPPKPAAKRPRWDSVERDSTPPSSVPESETVLCTGCQQPARQNTVRKN
GPNLGRLYYKCPKPDECNFFQWADEPPSSAKSKNSTGSAPQSTTSWGSNR
VVTLPSIQQSNSQRGQSSMRSNSSSTVTITQTKTKQQERNTATPGDGEEV
MCNCGQLASQLTVRKDGPNQGRPFYACPTREKSCGFFKWGDEDQNQGASS
TSWGSANRNPPGRSQPTAITSDGPKTRRCGLCRKEGHTRNKCPRKDEFDM
*

LD04601.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Top3alpha-PA 1250 CG10123-PA 1..1250 1..1250 6679 100 Plus
Top3beta-PB 875 CG3458-PB 5..612 29..636 934 35.9 Plus
Top3beta-PA 875 CG3458-PA 5..612 29..636 934 35.9 Plus
CG11458-PA 98 CG11458-PA 21..96 770..842 223 59.7 Plus
CG13376-PC 193 CG13376-PC 32..127 770..842 222 52.5 Plus
CG11458-PA 98 CG11458-PA 28..97 762..831 187 54.3 Plus
CG11458-PA 98 CG11458-PA 21..92 781..845 185 52.8 Plus