BDGP Sequence Production Resources |
Search the DGRC for LD04815
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 48 |
Well: | 15 |
Vector: | pBS SK- |
Associated Gene/Transcript | RpA-70-RA |
Protein status: | LD04815.pep: gold |
Preliminary Size: | 2219 |
Sequenced Size: | 2112 |
Gene | Date | Evidence |
---|---|---|
CG9633 | 2001-01-01 | Release 2 assignment |
CG9633 | 2001-11-09 | Blastp of sequenced clone |
CG9633 | 2003-01-01 | Sim4 clustering to Release 3 |
RpA-70 | 2008-04-29 | Release 5.5 accounting |
RpA-70 | 2008-08-15 | Release 5.9 accounting |
RpA-70 | 2008-12-18 | 5.12 accounting |
2112 bp (2112 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069331
> LD04815.complete CTTGTGAAATTGCCCAACTTATTTTTATAATCAAAATGGTCCTGGCATCT TTGTCCACTGGTGTGATTGCTCGCATTATGCATGGCGAGGTTGTGGATGC CCCGGTTCTCCAGATCCTGGCAATCAAGAAGATTAACAGCGCAGCGGACT CAGAGCGCTATCGCATCCTAATCTCCGACGGCAAGTACTTTAACAGCTAT GCGATGCTGGCCAGTCAGCTGAACGTGATGCAGCACAATGGAGAATTAGA GGAGTTCACCATTGTCCAGCTAGATAAATATGTGACCTCACTGGTAGGCA AGGACGGAGCCGGAAAACGCGTTCTCATCATTTCCGAACTAACTGTGGTG AATCCTGGCGCCGAGGTTAAGTCCAAAATTGGCGAACCCGTTACGTATGA AAATGCAGCCAAGCAGGATCTGGCGCCTAAGCCAGCAGTAACATCTAATT CCAAGCCAATTGCCAAAAAGGAACCGAGCCACAACAACAATAATAACATA GTAATGAATTCCTCTATTAATAGTGGAATGACACATCCCATTTCTAGCCT AAGTCCCTACCAAAATAAGTGGGTGATTAAGGCTCGCGTGACCTCAAAAT CCGGCATTCGCACCTGGAGCAATGCCCGCGGCGAGGGCAAGTTGTTCAGC ATGGATTTAATGGACGAATCGGGCGAAATTCGGGCCACTGCCTTCAAGGA ACAGTGCGATAAGTTCTACGACCTCATTCAAGTGGATAGCGTGTACTATA TATCAAAGTGTCAATTGAAACCGGCAAACAAGCAGTACTCTTCGCTGAAC AACGCCTACGAGATGACTTTTTCCGGTGAAACAGTTGTCCAGCTTTGTGA GGATACCGACGATGATCCCATACCGGAAATTAAGTACAACCTTGTTCCTA TTTCCGATGTGTCGGGTATGGAAAATAAAGCAGCGGTAGACACAATAGGA ATTTGCAAGGAGGTGGGCGAGTTGCAATCATTCGTAGCTCGCACCACAAA CAAGGAATTCAAGAAACGGGACATAACCCTAGTGGACATGAGTAACTCGG CCATCAGCTTGACCCTTTGGGGGGATGATGCCGTTAACTTTGACGGTCAT GTGCAGCCTGTGATCCTGGTCAAGGGAACACGCATTAACGAGTTCAATGG CGGAAAGTCCTTGAGCCTCGGCGGTGGCTCAATCATGAAGATTAACCCCG ATATACCCGAGGCACATAAGCTGCGCGGCTGGTTCGACAATGGAGGTGGT GACAGTGTCGCCAATATGGTTTCGGCGCGAACGGGCGGAGGAAGCTTCTC TACTGAATGGATGACGCTTAAGGATGCGCGGGCTCGCAATCTCGGCAGCG GCGACAAGCCTGATTACTTCCAGTGCAAGGCAGTGGTGCACATTGTCAAA CAGGAAAATGCTTTCTACCGAGCCTGCCCTCAGAGCGACTGCAACAAGAA GGTTGTCGATGAGGGCAACGACCAGTTCCGCTGCGAGAAATGTAACGCAC TGTTTCCCAACTTTAAGTACCGACTGCTGATCAACATGAGCATCGGGGAC TGGACTTCCAACCGTTGGGTCAGCAGTTTTAACGAGGTCGGTGAACAGCT TCTCGGGCACACTTCGCAGGAAGTGGGTGAGGCCCTTGAGAACGACCCTG CCAAAGCCGAGCAGATTTTCTCAGCACTCAACTTCACTTCACACATCTTT AAGCTGCGCTGCAAGAACGAGGTTTACGGGGACATGACTCGCAACAAGCT CACTGTGCAGTCTGTAGCCCCTATCAATCACAAGGAGTACAATAAGCACT TGCTCAAGGAGCTGCAGGAGCTAACCGGCATTGGCTCATCAAACTGAGTT CCATGCGCAGTGCGCCAAAACACGTTTCCCATAAATTAGGAATAGGCTAT ACATTTATTCATTACATTACATACGTTATTTCCAAATATTGTGAATGGGT TGTTATTCAGCTACGCTTCCCTTAATTAAAATAAAATTAAAAGCATTGGA GAAAGTGGAAGTAAATTGGTTTCGATTCTGAAACATGTAATATTAGCTGA GTACATATAAATAATATAAAATAACCGCCTGGTCTTGATAAAAAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpA-70-RA | 2427 | RpA-70-RA | 193..2283 | 1..2091 | 10455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4088760..4089978 | 1535..317 | 6080 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 4088127..4088680 | 2089..1536 | 2770 | 100 | Minus |
chr3R | 27901430 | chr3R | 4090036..4090280 | 316..72 | 1210 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 4090343..4090413 | 71..1 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 8262753..8263971 | 1535..317 | 6095 | 100 | Minus |
3R | 32079331 | 3R | 8262118..8262673 | 2091..1536 | 2780 | 100 | Minus |
3R | 32079331 | 3R | 8264029..8264273 | 316..72 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 8264335..8264405 | 71..1 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8003584..8004802 | 1535..317 | 6095 | 100 | Minus |
3R | 31820162 | 3R | 8002949..8003504 | 2091..1536 | 2780 | 100 | Minus |
3R | 31820162 | 3R | 8004860..8005104 | 316..72 | 1225 | 100 | Minus |
3R | 31820162 | 3R | 8005166..8005236 | 71..1 | 355 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4088127..4088680 | 1536..2089 | 96 | <- | Minus |
chr3R | 4088760..4089978 | 317..1535 | 99 | <- | Minus |
chr3R | 4090036..4090280 | 72..316 | 99 | <- | Minus |
chr3R | 4090343..4090413 | 1..71 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 1..1812 | 36..1847 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 1..1812 | 36..1847 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 1..1812 | 36..1847 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 1..1812 | 36..1847 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 1..1812 | 36..1847 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 45..2133 | 1..2089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 45..2133 | 1..2089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 47..2135 | 1..2089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 45..2133 | 1..2089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpA-70-RA | 47..2135 | 1..2089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8262120..8262673 | 1536..2089 | 100 | <- | Minus |
3R | 8262753..8263971 | 317..1535 | 100 | <- | Minus |
3R | 8264029..8264273 | 72..316 | 100 | <- | Minus |
3R | 8264335..8264405 | 1..71 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8262120..8262673 | 1536..2089 | 100 | <- | Minus |
3R | 8262753..8263971 | 317..1535 | 100 | <- | Minus |
3R | 8264029..8264273 | 72..316 | 100 | <- | Minus |
3R | 8264335..8264405 | 1..71 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8262120..8262673 | 1536..2089 | 100 | <- | Minus |
3R | 8262753..8263971 | 317..1535 | 100 | <- | Minus |
3R | 8264029..8264273 | 72..316 | 100 | <- | Minus |
3R | 8264335..8264405 | 1..71 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4087842..4088395 | 1536..2089 | 100 | <- | Minus |
arm_3R | 4088475..4089693 | 317..1535 | 100 | <- | Minus |
arm_3R | 4089751..4089995 | 72..316 | 100 | <- | Minus |
arm_3R | 4090057..4090127 | 1..71 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8002951..8003504 | 1536..2089 | 100 | <- | Minus |
3R | 8003584..8004802 | 317..1535 | 100 | <- | Minus |
3R | 8004860..8005104 | 72..316 | 100 | <- | Minus |
3R | 8005166..8005236 | 1..71 | 100 | Minus |
Translation from 2 to 1846
> LD04815.hyp CEIAQLIFIIKMVLASLSTGVIARIMHGEVVDAPVLQILAIKKINSAADS ERYRILISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGK DGAGKRVLIISELTVVNPGAEVKSKIGEPVTYENAAKQDLAPKPAVTSNS KPIAKKEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKS GIRTWSNARGEGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYI SKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPI SDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSA ISLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPD IPEAHKLRGWFDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSG DKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRCEKCNAL FPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPA KAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHL LKELQELTGIGSSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpA-70-PA | 603 | CG9633-PA | 1..603 | 12..614 | 3127 | 100 | Plus |
Translation from 35 to 1846
> LD04815.pep MVLASLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGK YFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIIS ELTVVNPGAEVKSKIGEPVTYENAAKQDLAPKPAVTSNSKPIAKKEPSHN NNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGE GKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQ YSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAA VDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAV NFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAV VHIVKQENAFYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLIN MSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQIFSALNF TSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQELTGIG SSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23244-PA | 603 | GF23244-PA | 1..603 | 1..603 | 2793 | 88.9 | Plus |
Dana\GF19997-PA | 265 | GF19997-PA | 32..260 | 165..402 | 343 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17466-PA | 603 | GG17466-PA | 1..603 | 1..603 | 3170 | 97 | Plus |
Dere\GG17468-PA | 228 | GG17468-PA | 1..227 | 168..402 | 363 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19242-PA | 602 | GH19242-PA | 2..602 | 9..603 | 2521 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpA-70-PA | 603 | CG9633-PA | 1..603 | 1..603 | 3127 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24276-PA | 610 | GI24276-PA | 1..610 | 1..603 | 2607 | 77.7 | Plus |
Dmoj\GI24277-PA | 557 | GI24277-PA | 1..557 | 15..602 | 1661 | 55.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24182-PA | 603 | GL24182-PA | 1..602 | 1..603 | 2755 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21928-PA | 603 | GA21928-PA | 1..602 | 1..603 | 2753 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26360-PA | 603 | GM26360-PA | 1..603 | 1..603 | 3234 | 99.3 | Plus |
Dsec\GM26361-PA | 228 | GM26361-PA | 1..226 | 168..402 | 346 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20882-PA | 603 | GD20882-PA | 1..603 | 1..603 | 3232 | 99.2 | Plus |
Dsim\GD20884-PA | 268 | GD20884-PA | 39..267 | 165..402 | 385 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23056-PA | 609 | GJ23056-PA | 4..609 | 3..603 | 2633 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11360-PA | 605 | GK11360-PA | 2..605 | 5..603 | 2548 | 80.7 | Plus |