Clone LD04815 Report

Search the DGRC for LD04815

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:48
Well:15
Vector:pBS SK-
Associated Gene/TranscriptRpA-70-RA
Protein status:LD04815.pep: gold
Preliminary Size:2219
Sequenced Size:2112

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9633 2001-01-01 Release 2 assignment
CG9633 2001-11-09 Blastp of sequenced clone
CG9633 2003-01-01 Sim4 clustering to Release 3
RpA-70 2008-04-29 Release 5.5 accounting
RpA-70 2008-08-15 Release 5.9 accounting
RpA-70 2008-12-18 5.12 accounting

Clone Sequence Records

LD04815.complete Sequence

2112 bp (2112 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069331

> LD04815.complete
CTTGTGAAATTGCCCAACTTATTTTTATAATCAAAATGGTCCTGGCATCT
TTGTCCACTGGTGTGATTGCTCGCATTATGCATGGCGAGGTTGTGGATGC
CCCGGTTCTCCAGATCCTGGCAATCAAGAAGATTAACAGCGCAGCGGACT
CAGAGCGCTATCGCATCCTAATCTCCGACGGCAAGTACTTTAACAGCTAT
GCGATGCTGGCCAGTCAGCTGAACGTGATGCAGCACAATGGAGAATTAGA
GGAGTTCACCATTGTCCAGCTAGATAAATATGTGACCTCACTGGTAGGCA
AGGACGGAGCCGGAAAACGCGTTCTCATCATTTCCGAACTAACTGTGGTG
AATCCTGGCGCCGAGGTTAAGTCCAAAATTGGCGAACCCGTTACGTATGA
AAATGCAGCCAAGCAGGATCTGGCGCCTAAGCCAGCAGTAACATCTAATT
CCAAGCCAATTGCCAAAAAGGAACCGAGCCACAACAACAATAATAACATA
GTAATGAATTCCTCTATTAATAGTGGAATGACACATCCCATTTCTAGCCT
AAGTCCCTACCAAAATAAGTGGGTGATTAAGGCTCGCGTGACCTCAAAAT
CCGGCATTCGCACCTGGAGCAATGCCCGCGGCGAGGGCAAGTTGTTCAGC
ATGGATTTAATGGACGAATCGGGCGAAATTCGGGCCACTGCCTTCAAGGA
ACAGTGCGATAAGTTCTACGACCTCATTCAAGTGGATAGCGTGTACTATA
TATCAAAGTGTCAATTGAAACCGGCAAACAAGCAGTACTCTTCGCTGAAC
AACGCCTACGAGATGACTTTTTCCGGTGAAACAGTTGTCCAGCTTTGTGA
GGATACCGACGATGATCCCATACCGGAAATTAAGTACAACCTTGTTCCTA
TTTCCGATGTGTCGGGTATGGAAAATAAAGCAGCGGTAGACACAATAGGA
ATTTGCAAGGAGGTGGGCGAGTTGCAATCATTCGTAGCTCGCACCACAAA
CAAGGAATTCAAGAAACGGGACATAACCCTAGTGGACATGAGTAACTCGG
CCATCAGCTTGACCCTTTGGGGGGATGATGCCGTTAACTTTGACGGTCAT
GTGCAGCCTGTGATCCTGGTCAAGGGAACACGCATTAACGAGTTCAATGG
CGGAAAGTCCTTGAGCCTCGGCGGTGGCTCAATCATGAAGATTAACCCCG
ATATACCCGAGGCACATAAGCTGCGCGGCTGGTTCGACAATGGAGGTGGT
GACAGTGTCGCCAATATGGTTTCGGCGCGAACGGGCGGAGGAAGCTTCTC
TACTGAATGGATGACGCTTAAGGATGCGCGGGCTCGCAATCTCGGCAGCG
GCGACAAGCCTGATTACTTCCAGTGCAAGGCAGTGGTGCACATTGTCAAA
CAGGAAAATGCTTTCTACCGAGCCTGCCCTCAGAGCGACTGCAACAAGAA
GGTTGTCGATGAGGGCAACGACCAGTTCCGCTGCGAGAAATGTAACGCAC
TGTTTCCCAACTTTAAGTACCGACTGCTGATCAACATGAGCATCGGGGAC
TGGACTTCCAACCGTTGGGTCAGCAGTTTTAACGAGGTCGGTGAACAGCT
TCTCGGGCACACTTCGCAGGAAGTGGGTGAGGCCCTTGAGAACGACCCTG
CCAAAGCCGAGCAGATTTTCTCAGCACTCAACTTCACTTCACACATCTTT
AAGCTGCGCTGCAAGAACGAGGTTTACGGGGACATGACTCGCAACAAGCT
CACTGTGCAGTCTGTAGCCCCTATCAATCACAAGGAGTACAATAAGCACT
TGCTCAAGGAGCTGCAGGAGCTAACCGGCATTGGCTCATCAAACTGAGTT
CCATGCGCAGTGCGCCAAAACACGTTTCCCATAAATTAGGAATAGGCTAT
ACATTTATTCATTACATTACATACGTTATTTCCAAATATTGTGAATGGGT
TGTTATTCAGCTACGCTTCCCTTAATTAAAATAAAATTAAAAGCATTGGA
GAAAGTGGAAGTAAATTGGTTTCGATTCTGAAACATGTAATATTAGCTGA
GTACATATAAATAATATAAAATAACCGCCTGGTCTTGATAAAAAAAAAAA
AAAAAAAAAAAA

LD04815.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpA-70-RA 2427 RpA-70-RA 193..2283 1..2091 10455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4088760..4089978 1535..317 6080 99.9 Minus
chr3R 27901430 chr3R 4088127..4088680 2089..1536 2770 100 Minus
chr3R 27901430 chr3R 4090036..4090280 316..72 1210 99.6 Minus
chr3R 27901430 chr3R 4090343..4090413 71..1 355 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8262753..8263971 1535..317 6095 100 Minus
3R 32079331 3R 8262118..8262673 2091..1536 2780 100 Minus
3R 32079331 3R 8264029..8264273 316..72 1225 100 Minus
3R 32079331 3R 8264335..8264405 71..1 355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8003584..8004802 1535..317 6095 100 Minus
3R 31820162 3R 8002949..8003504 2091..1536 2780 100 Minus
3R 31820162 3R 8004860..8005104 316..72 1225 100 Minus
3R 31820162 3R 8005166..8005236 71..1 355 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:23:35 has no hits.

LD04815.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:24:54 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4088127..4088680 1536..2089 96 <- Minus
chr3R 4088760..4089978 317..1535 99 <- Minus
chr3R 4090036..4090280 72..316 99 <- Minus
chr3R 4090343..4090413 1..71 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:35:29 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 1..1812 36..1847 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:01 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 1..1812 36..1847 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:08:33 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 1..1812 36..1847 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:38 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 1..1812 36..1847 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:25:49 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 1..1812 36..1847 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:26 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 45..2133 1..2089 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:01 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 45..2133 1..2089 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:08:33 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 47..2135 1..2089 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:38 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 45..2133 1..2089 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:25:49 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
RpA-70-RA 47..2135 1..2089 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:24:54 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8262120..8262673 1536..2089 100 <- Minus
3R 8262753..8263971 317..1535 100 <- Minus
3R 8264029..8264273 72..316 100 <- Minus
3R 8264335..8264405 1..71 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:24:54 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8262120..8262673 1536..2089 100 <- Minus
3R 8262753..8263971 317..1535 100 <- Minus
3R 8264029..8264273 72..316 100 <- Minus
3R 8264335..8264405 1..71 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:24:54 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8262120..8262673 1536..2089 100 <- Minus
3R 8262753..8263971 317..1535 100 <- Minus
3R 8264029..8264273 72..316 100 <- Minus
3R 8264335..8264405 1..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:33 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4087842..4088395 1536..2089 100 <- Minus
arm_3R 4088475..4089693 317..1535 100 <- Minus
arm_3R 4089751..4089995 72..316 100 <- Minus
arm_3R 4090057..4090127 1..71 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:48 Download gff for LD04815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8002951..8003504 1536..2089 100 <- Minus
3R 8003584..8004802 317..1535 100 <- Minus
3R 8004860..8005104 72..316 100 <- Minus
3R 8005166..8005236 1..71 100   Minus

LD04815.hyp Sequence

Translation from 2 to 1846

> LD04815.hyp
CEIAQLIFIIKMVLASLSTGVIARIMHGEVVDAPVLQILAIKKINSAADS
ERYRILISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGK
DGAGKRVLIISELTVVNPGAEVKSKIGEPVTYENAAKQDLAPKPAVTSNS
KPIAKKEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKS
GIRTWSNARGEGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYI
SKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPI
SDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSA
ISLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPD
IPEAHKLRGWFDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSG
DKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRCEKCNAL
FPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPA
KAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHL
LKELQELTGIGSSN*

LD04815.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpA-70-PA 603 CG9633-PA 1..603 12..614 3127 100 Plus

LD04815.pep Sequence

Translation from 35 to 1846

> LD04815.pep
MVLASLSTGVIARIMHGEVVDAPVLQILAIKKINSAADSERYRILISDGK
YFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIIS
ELTVVNPGAEVKSKIGEPVTYENAAKQDLAPKPAVTSNSKPIAKKEPSHN
NNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGE
GKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQ
YSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAA
VDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAV
NFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF
DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAV
VHIVKQENAFYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLIN
MSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQIFSALNF
TSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQELTGIG
SSN*

LD04815.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23244-PA 603 GF23244-PA 1..603 1..603 2793 88.9 Plus
Dana\GF19997-PA 265 GF19997-PA 32..260 165..402 343 36 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17466-PA 603 GG17466-PA 1..603 1..603 3170 97 Plus
Dere\GG17468-PA 228 GG17468-PA 1..227 168..402 363 38.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19242-PA 602 GH19242-PA 2..602 9..603 2521 77.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
RpA-70-PA 603 CG9633-PA 1..603 1..603 3127 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24276-PA 610 GI24276-PA 1..610 1..603 2607 77.7 Plus
Dmoj\GI24277-PA 557 GI24277-PA 1..557 15..602 1661 55.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24182-PA 603 GL24182-PA 1..602 1..603 2755 86.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21928-PA 603 GA21928-PA 1..602 1..603 2753 86.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26360-PA 603 GM26360-PA 1..603 1..603 3234 99.3 Plus
Dsec\GM26361-PA 228 GM26361-PA 1..226 168..402 346 37.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20882-PA 603 GD20882-PA 1..603 1..603 3232 99.2 Plus
Dsim\GD20884-PA 268 GD20884-PA 39..267 165..402 385 39.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23056-PA 609 GJ23056-PA 4..609 3..603 2633 78.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11360-PA 605 GK11360-PA 2..605 5..603 2548 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24866-PA 603 GE24866-PA 1..603 1..603 3180 97.2 Plus
Dyak\GE24867-PA 189 GE24867-PA 1..188 206..402 320 38.6 Plus