Clone LD04844 Report

Search the DGRC for LD04844

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:48
Well:44
Vector:pBS SK-
Associated Gene/TranscriptCG1572-RA
Protein status:LD04844.pep: gold
Preliminary Size:1190
Sequenced Size:962

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1572 2001-01-01 Release 2 assignment
CG1572 2002-06-06 Blastp of sequenced clone
CG1572 2003-01-01 Sim4 clustering to Release 3
CG1572 2008-04-29 Release 5.5 accounting
CG1572 2008-08-15 Release 5.9 accounting
CG1572 2008-12-18 5.12 accounting

Clone Sequence Records

LD04844.complete Sequence

962 bp (962 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119575

> LD04844.complete
CGAAAAGACGCAAAAGTCGAAAGAAAAGTGCGAGGAAAACCAGTTGGCTG
AGTCCTACGCCGAATTTTGAGAAAAGTAAGAACCCCACCTTTAACCCCCC
GAAAAGAACCACCGAAGCAGAGCGAAGATGTCGCATTCAGTGACCATTAC
CCGCACCACCACCAGCACCACCAACACCTCCTACATTGTCCTGAACACGG
GCTATCTGAAGACTTTCCCCGGCATCCTCAAGCTCTTCGAGCTGATCATT
GGTGCTTCCATTGTGGGAATTCTGGCGTTCAACTACCAGGACTACCACAG
ATACTTCTATGGCCAGCAGGATCTGTTCCATTATCTGATGGCCGTTACCT
TTATGATAGGAACGTTCTGTTTACTCCTCGCCTGCCTCACGTCGCTCAGC
ACGGGCGGCATTATTGCCAAGACGATCTATGAGCTGATTTACCACAGTGT
GGCCGCCATCCTGATCCTGGTCTCGTCCACCATCCTGCTGCTCAAGCTGC
GCGATGTAAAGCACGACGCCTATATGGCAGCCGGTGTTTTGGGCCTGGTC
AATGCGGTGCTGTACTTCATCAGCGCCTTCCTGGCCCACCGATCCTATCG
CGGCATTTAAGCACTAAAGCACCCAAAACCCACCGCCCACTCGGCCATTC
AAGTGGAATTTGCAATCTCGAAGCATTTGTTCTTCCCACAACCAACTCTA
GCCACTGGTCATGCGAAGCAGGAGAAGGAGGCGAGAGCCCAGGGATATAC
AAACATAGATGTAGAGAAAGTGGGTGCCAAGCGGCGGAATCTTTGTTGTA
CTGTGAAACGTTCTTTGGCGCTAGTTACACTTACTTGTACTTTTACCGAT
ATATACAAAACTTTTTTTTTGTCTCACTTTCTTTTGTACCAAACAGATTG
TCATGTATTCGAATAAAGATGTGTGTCTATATGTTTTTTCTAAAAAAAAA
AAAAAAAAAAAA

LD04844.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-RB 974 CG1572-RB 34..974 1..941 4705 100 Plus
CG1572-RA 1239 CG1572-RA 70..1007 1..944 4605 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11446479..11446989 941..431 2555 100 Minus
chrX 22417052 chrX 11447119..11447306 431..244 940 100 Minus
chrX 22417052 chrX 11447378..11447540 244..82 815 100 Minus
chrX 22417052 chrX 11449732..11449812 81..1 405 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11555282..11555795 944..431 2570 100 Minus
X 23542271 X 11555925..11556112 431..244 940 100 Minus
X 23542271 X 11556184..11556346 244..82 815 100 Minus
X 23542271 X 11558533..11558613 81..1 405 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11563380..11563893 944..431 2570 100 Minus
X 23527363 X 11564023..11564210 431..244 940 100 Minus
X 23527363 X 11564282..11564444 244..82 815 100 Minus
X 23527363 X 11566631..11566711 81..1 405 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:27:18 has no hits.

LD04844.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:28:17 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11449732..11449812 1..81 100   Minus
chrX 11446479..11446989 431..941 100 <- Minus
chrX 11447120..11447305 245..430 100 <- Minus
chrX 11447378..11447540 82..244 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:35:32 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 1..483 128..610 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:03 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 1..483 128..610 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:46 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 1..483 128..610 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:08 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 1..483 128..610 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:41 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 1..483 128..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:00:59 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 1..941 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:03 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 34..974 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:46 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 34..974 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:08 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 1..941 1..941 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:41 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
CG1572-RB 34..974 1..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:17 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
X 11556184..11556346 82..244 100 <- Minus
X 11558533..11558613 1..81 100   Minus
X 11555285..11555795 431..941 100 <- Minus
X 11555926..11556111 245..430 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:17 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
X 11556184..11556346 82..244 100 <- Minus
X 11558533..11558613 1..81 100   Minus
X 11555285..11555795 431..941 100 <- Minus
X 11555926..11556111 245..430 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:17 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
X 11556184..11556346 82..244 100 <- Minus
X 11558533..11558613 1..81 100   Minus
X 11555285..11555795 431..941 100 <- Minus
X 11555926..11556111 245..430 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:46 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11449318..11449828 431..941 100 <- Minus
arm_X 11449959..11450144 245..430 100 <- Minus
arm_X 11450217..11450379 82..244 100 <- Minus
arm_X 11452566..11452646 1..81 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:57 Download gff for LD04844.complete
Subject Subject Range Query Range Percent Splice Strand
X 11563383..11563893 431..941 100 <- Minus
X 11564024..11564209 245..430 100 <- Minus
X 11564282..11564444 82..244 100 <- Minus
X 11566631..11566711 1..81 100   Minus

LD04844.hyp Sequence

Translation from 127 to 609

> LD04844.hyp
MSHSVTITRTTTSTTNTSYIVLNTGYLKTFPGILKLFELIIGASIVGILA
FNYQDYHRYFYGQQDLFHYLMAVTFMIGTFCLLLACLTSLSTGGIIAKTI
YELIYHSVAAILILVSSTILLLKLRDVKHDAYMAAGVLGLVNAVLYFISA
FLAHRSYRGI*

LD04844.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-PD 160 CG1572-PD 1..160 1..160 804 100 Plus
CG1572-PC 160 CG1572-PC 1..160 1..160 804 100 Plus
CG1572-PB 160 CG1572-PB 1..160 1..160 804 100 Plus
CG1572-PA 160 CG1572-PA 1..160 1..160 804 100 Plus

LD04844.pep Sequence

Translation from 127 to 609

> LD04844.pep
MSHSVTITRTTTSTTNTSYIVLNTGYLKTFPGILKLFELIIGASIVGILA
FNYQDYHRYFYGQQDLFHYLMAVTFMIGTFCLLLACLTSLSTGGIIAKTI
YELIYHSVAAILILVSSTILLLKLRDVKHDAYMAAGVLGLVNAVLYFISA
FLAHRSYRGI*

LD04844.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19145-PA 160 GF19145-PA 1..160 1..160 652 89.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18852-PA 160 GG18852-PA 1..160 1..160 686 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24752-PA 160 GH24752-PA 1..160 1..160 574 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1572-PD 160 CG1572-PD 1..160 1..160 804 100 Plus
CG1572-PC 160 CG1572-PC 1..160 1..160 804 100 Plus
CG1572-PB 160 CG1572-PB 1..160 1..160 804 100 Plus
CG1572-PA 160 CG1572-PA 1..160 1..160 804 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14723-PA 159 GI14723-PA 1..159 1..160 573 81.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16566-PA 161 GL16566-PA 1..161 1..160 641 87.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23102-PA 162 GA23102-PA 1..162 1..160 637 85.8 Plus
Dpse\GA23103-PA 85 GA23103-PA 1..85 76..160 383 90.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13066-PA 160 GM13066-PA 1..160 1..160 800 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13927-PA 102 GD13927-PA 1..102 1..102 518 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19437-PA 159 GJ19437-PA 1..159 1..160 556 78.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10217-PA 161 GK10217-PA 1..161 1..160 633 87.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17293-PA 160 GE17293-PA 1..160 1..160 797 96.9 Plus