Clone LD04933 Report

Search the DGRC for LD04933

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:49
Well:33
Vector:pBS SK-
Associated Gene/Transcriptste24a-RA
Protein status:LD04933.pep: gold
Preliminary Size:1746
Sequenced Size:1555

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9000 2001-01-01 Release 2 assignment
CG9000 2001-11-09 Blastp of sequenced clone
CG9000 2003-01-01 Sim4 clustering to Release 3
CG9000 2008-04-29 Release 5.5 accounting
CG9000 2008-08-15 Release 5.9 accounting
CG9000 2008-12-18 5.12 accounting

Clone Sequence Records

LD04933.complete Sequence

1555 bp (1555 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069332

> LD04933.complete
CGGCACGAGGGCGCTTGTAAAGTAAAATTCCAGTTTTATTAGTTCTTTAA
TGAAATAGCATTTAAATATGTCATCATTGGACGCAGACACCGTGCTGCTG
AGCATTTTGTTCCTCGTAGTCATCGAGAATGCGCTAGAGATCTATATATC
GCTGCGCCAGGTGAAAGTGTACCAAACTGCACTGAAGGTACCGGCCGAAC
TGAAGTCACACATGGGCGAGGATACGTTCCATAAGGCGCGGAAATATGGT
CTGGACCAGGAGAAATTCGGCATCTTCAAAGCTGTTGTTATGGATGTGGC
CCTGCTTTGCATGGAGCTGTACATCGGACTGATCGCTGTGCTCTGGCAGC
TGTCCGTCCAGGTGGTGGATAAACTGCAATGGGACTCCAAAAACGAGATC
ATCGTCAGCTGCGTTTTTGTGCTCATATCGAATGTATTGAGCACTTTCAA
GGGACTGCCCTTCAAGATCTACAAGATATTCGTGCTGGAGGAGACGCATG
GCTTTAACAAACAAACAGCGAGATTCTTCGCCTGGGATCAGCTCAAAGGC
TTCCTAGTCACCCAGGTCCTCATGATTCCCATCACAGCGGCTATTATCTT
CATCGTGCAACGCGGCGGCGACAACTTTTTCATATGGCTGTGGATCTTCA
CAGGCGTTATCTCGCTGGTTCTACTCACTTTGTATCCGATTTTCATTGCT
CCCCTGTTCGACAAGTATACTCCGCTGGAGAAGGGTGCTCTGAGGCAATC
GATTGAGGATCTGGCCGCATCGCTCAAGTTCCCGCTCACTAAGCTTTTCG
TGGTGGAGGGATCCAAGCGCTCCTCGCACAGCAATGCCTACTTCTATGGC
CTCTGGAACTCGAAGAGGATCGTGCTATTCGACACGCTGCTGCTAAACAA
AGGTAAACCGGACGACTCCGAGTTGTCAGAGGAAGAAAAGGGAAAGGGTT
GCACCGACGAGGAGGTGCTGGCTGTTTTGGGACACGAGCTGGGACACTGG
AAACTGGGACACGTTACCAAGAACATTATTATCATGCAGGTTCATCTCTT
TCTGATGTTCCTGGTCTTTGGAAATGTCTTCAAGTATCCACCATTCTACG
TGGCCATGGGATTCCAACCTGGTACTCGGCCCATTCTCGTCGGTTTGCTA
ATCGTCTTTACCTACGTACTCGCGCCATACAATGCCCTCATGAACTTCGC
CATGACAATTTTGTCGCGACGATTCGAGTATCAGGCTGATGAGTTCGCTT
TCAAGTTGGGATTCGCTGAGCAGTTGGGTCAGGCCCTCATAAAACTGAAC
GTTGACAACCTTGGCTTCCCCGTTTACGATTGGCTGTACTCGACTTGGAA
CCACTCACATCCGACTCTTCTCCAGCGCCTGAATCGACTCAAGGAGCTCA
AGGAAGAGAAGAAACTGAACTAAGACAGCTCACTTCACATAAGACCAAAG
TTTACACTATTCCCTTTGATTTAACGTACACAAAATAAAGTAAGGGGACT
TACCCCAACAAGCTATTTAAGATTTTGCAATGTGGAAAAAAAAAAAAAAA
AAAAA

LD04933.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
ste24a-RA 1733 ste24a-RA 59..1587 10..1538 7645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12887473..12888851 1535..157 6850 99.8 Minus
chr2R 21145070 chr2R 12888997..12889149 162..10 765 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17000241..17001622 1538..157 6910 100 Minus
2R 25286936 2R 17001768..17001920 162..10 765 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17001440..17002821 1538..157 6910 100 Minus
2R 25260384 2R 17002967..17003119 162..10 765 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:44:11 has no hits.

LD04933.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:45:06 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12887473..12888847 161..1535 99 <- Minus
chr2R 12888999..12889156 1..160 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:35:38 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
CG9000-RA 1..1356 68..1423 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:51 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
ste24a-RA 1..1356 68..1423 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:56:53 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
ste24a-RA 1..1356 68..1423 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:30 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
CG9000-RA 1..1356 68..1423 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:45 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
ste24a-RA 1..1356 68..1423 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:02 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
CG9000-RA 1..1532 7..1535 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:51 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
ste24a-RA 1..1532 7..1535 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:56:53 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
ste24a-RA 15..1547 1..1535 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:30 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
CG9000-RA 1..1532 7..1535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:45 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
ste24a-RA 15..1547 1..1535 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:06 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17000244..17001618 161..1535 100 <- Minus
2R 17001770..17001927 1..160 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:06 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17000244..17001618 161..1535 100 <- Minus
2R 17001770..17001927 1..160 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:06 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17000244..17001618 161..1535 100 <- Minus
2R 17001770..17001927 1..160 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:56:53 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12887749..12889123 161..1535 100 <- Minus
arm_2R 12889275..12889432 1..160 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:54 Download gff for LD04933.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17002969..17003126 1..160 97   Minus
2R 17001443..17002817 161..1535 100 <- Minus

LD04933.pep Sequence

Translation from 67 to 1422

> LD04933.pep
MSSLDADTVLLSILFLVVIENALEIYISLRQVKVYQTALKVPAELKSHMG
EDTFHKARKYGLDQEKFGIFKAVVMDVALLCMELYIGLIAVLWQLSVQVV
DKLQWDSKNEIIVSCVFVLISNVLSTFKGLPFKIYKIFVLEETHGFNKQT
ARFFAWDQLKGFLVTQVLMIPITAAIIFIVQRGGDNFFIWLWIFTGVISL
VLLTLYPIFIAPLFDKYTPLEKGALRQSIEDLAASLKFPLTKLFVVEGSK
RSSHSNAYFYGLWNSKRIVLFDTLLLNKGKPDDSELSEEEKGKGCTDEEV
LAVLGHELGHWKLGHVTKNIIIMQVHLFLMFLVFGNVFKYPPFYVAMGFQ
PGTRPILVGLLIVFTYVLAPYNALMNFAMTILSRRFEYQADEFAFKLGFA
EQLGQALIKLNVDNLGFPVYDWLYSTWNHSHPTLLQRLNRLKELKEEKKL
N*

LD04933.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13434-PA 451 GF13434-PA 1..451 1..451 2205 91.1 Plus
Dana\GF13435-PA 450 GF13435-PA 7..445 5..444 766 37.4 Plus
Dana\GF13436-PA 455 GF13436-PA 31..454 24..449 697 37.7 Plus
Dana\GF25256-PA 480 GF25256-PA 42..472 13..449 430 25.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22228-PA 451 GG22228-PA 1..451 1..451 2331 97.6 Plus
Dere\GG22229-PA 447 GG22229-PA 8..447 5..446 728 36.8 Plus
Dere\GG22230-PA 455 GG22230-PA 30..446 24..444 712 37.6 Plus
Dere\GG15495-PA 477 GG15495-PA 35..471 6..447 378 23.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22828-PA 455 GH22828-PA 1..455 1..451 2036 83.3 Plus
Dgri\GH22830-PA 454 GH22830-PA 10..449 4..447 735 36.7 Plus
Dgri\GH22829-PA 451 GH22829-PA 22..448 20..446 709 36.8 Plus
Dgri\GH14290-PA 478 GH14290-PA 34..474 6..448 544 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
ste24a-PA 451 CG9000-PA 1..451 1..451 2324 100 Plus
ste24b-PA 447 CG9001-PA 8..446 5..445 769 37.8 Plus
ste24c-PC 456 CG9002-PC 10..440 4..438 763 37.1 Plus
ste24c-PD 456 CG9002-PD 10..440 4..438 763 37.1 Plus
ste24c-PA 456 CG9002-PA 10..440 4..438 763 37.1 Plus
CG7573-PB 477 CG7573-PB 35..468 6..444 389 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21207-PA 452 GI21207-PA 1..449 1..449 2053 85.3 Plus
Dmoj\GI21208-PA 450 GI21208-PA 22..449 19..448 741 34.9 Plus
Dmoj\GI21209-PA 454 GI21209-PA 8..449 2..447 740 35.9 Plus
Dmoj\GI23185-PA 485 GI23185-PA 46..471 16..444 442 27.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10491-PA 451 GL10491-PA 1..451 1..451 2135 87.4 Plus
Dper\GL10493-PA 470 GL10493-PA 11..453 5..449 749 37.1 Plus
Dper\GL10492-PA 442 GL10492-PA 10..399 7..398 576 33.3 Plus
Dper\GL22777-PA 260 GL22777-PA 159..255 355..451 165 35.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21466-PA 451 GA21466-PA 1..451 1..451 2140 87.8 Plus
Dpse\GA21467-PA 451 GA21467-PA 10..450 7..449 768 36.3 Plus
Dpse\GA17316-PA 470 GA17316-PA 11..453 5..449 752 37.1 Plus
Dpse\GA20448-PA 481 GA20448-PA 46..476 17..451 516 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20015-PA 451 GM20015-PA 1..451 1..451 2355 99.1 Plus
Dsec\GM20016-PA 447 GM20016-PA 8..447 5..446 724 37 Plus
Dsec\GM25266-PA 477 GM25266-PA 35..469 6..445 360 24 Plus
Dsec\GM20017-PA 494 GM20017-PA 30..302 24..300 321 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25504-PA 451 GD25504-PA 1..451 1..451 2353 99.1 Plus
Dsim\GD15221-PA 226 GD15221-PA 2..222 228..451 524 45.1 Plus
Dsim\GD14300-PA 477 GD14300-PA 35..469 6..445 355 23.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20808-PA 452 GJ20808-PA 1..449 1..449 2028 85.1 Plus
Dvir\GJ20810-PA 454 GJ20810-PA 15..453 10..451 744 37.5 Plus
Dvir\GJ20809-PA 453 GJ20809-PA 10..419 8..418 662 35.8 Plus
Dvir\GJ14500-PA 474 GJ14500-PA 35..472 7..445 525 30.5 Plus
Dvir\GJ15402-PA 101 GJ15402-PA 1..101 243..343 406 73.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19569-PA 451 GK19569-PA 1..450 1..450 2084 85.8 Plus
Dwil\GK19571-PA 449 GK19571-PA 8..449 2..448 800 38.4 Plus
Dwil\GK19570-PA 452 GK19570-PA 8..452 5..451 783 34.7 Plus
Dwil\GK24789-PA 482 GK24789-PA 34..471 6..445 623 31.1 Plus
Dwil\GK18949-PA 374 GK18949-PA 14..367 82..441 534 33.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14225-PA 407 GE14225-PA 1..403 1..403 2055 96.5 Plus
Dyak\GE14226-PA 447 GE14226-PA 8..447 5..446 790 38.6 Plus
Dyak\GE14227-PA 453 GE14227-PA 30..452 24..451 734 37.6 Plus
Dyak\GE21805-PA 484 GE21805-PA 44..476 13..451 339 22.3 Plus

LD04933.hyp Sequence

Translation from 67 to 1422

> LD04933.hyp
MSSLDADTVLLSILFLVVIENALEIYISLRQVKVYQTALKVPAELKSHMG
EDTFHKARKYGLDQEKFGIFKAVVMDVALLCMELYIGLIAVLWQLSVQVV
DKLQWDSKNEIIVSCVFVLISNVLSTFKGLPFKIYKIFVLEETHGFNKQT
ARFFAWDQLKGFLVTQVLMIPITAAIIFIVQRGGDNFFIWLWIFTGVISL
VLLTLYPIFIAPLFDKYTPLEKGALRQSIEDLAASLKFPLTKLFVVEGSK
RSSHSNAYFYGLWNSKRIVLFDTLLLNKGKPDDSELSEEEKGKGCTDEEV
LAVLGHELGHWKLGHVTKNIIIMQVHLFLMFLVFGNVFKYPPFYVAMGFQ
PGTRPILVGLLIVFTYVLAPYNALMNFAMTILSRRFEYQADEFAFKLGFA
EQLGQALIKLNVDNLGFPVYDWLYSTWNHSHPTLLQRLNRLKELKEEKKL
N*

LD04933.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
ste24a-PA 451 CG9000-PA 1..451 1..451 2324 100 Plus
ste24b-PA 447 CG9001-PA 8..446 5..445 769 37.8 Plus
ste24c-PC 456 CG9002-PC 10..440 4..438 763 37.1 Plus
ste24c-PD 456 CG9002-PD 10..440 4..438 763 37.1 Plus
ste24c-PA 456 CG9002-PA 10..440 4..438 763 37.1 Plus