Clone LD04951 Report

Search the DGRC for LD04951

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:49
Well:51
Vector:pBS SK-
Associated Gene/TranscriptCG5118-RA
Protein status:LD04951.pep: gold
Preliminary Size:1971
Sequenced Size:1752

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5118 2001-01-01 Release 2 assignment
CG5118 2002-06-06 Blastp of sequenced clone
CG5118 2003-01-01 Sim4 clustering to Release 3
CG5118 2008-04-29 Release 5.5 accounting
CG5118 2008-08-15 Release 5.9 accounting
CG5118 2008-12-18 5.12 accounting

Clone Sequence Records

LD04951.complete Sequence

1752 bp (1752 high quality bases) assembled on 2006-06-05

GenBank Submission: AY119576

> LD04951.complete
CCAATTAGTTTTTTTTTGATCGTCCTAAACTTGGAAGTCCCACGAATTCA
ATCACTAGCTGACGGCCTTATCGCTGGTAGATATTGCGAGATCGAGCAGT
GCATTGTAAAACGGCCACGATGAAGAAGGTTCTATTGACCAAAGCCCAGC
ACATCCAACCAGTCGTCGCTAGTAGTTCGGATGTTTTGGTGATCAAACCA
GTCGGTTCCCTGCGAGTGATATCCATCTCAGCGCCACATAGTGCCTCTAC
CTACATCCAGCGCAAGTCCTTCCAGCCCGTCTACGAGGACATCTTCAAAT
TACTCATGAAAATCCCAGACAAAGCCCTTACCCAAAGGGTGATCGACGCG
ATAAACGAGAGCAATAATAACGATAAGGTCGCTATCTCCAATCACGGTAA
ACAATGTTCGTGCGGAGTCCAAAAAGTCGATTCATCTACACAAACGGATT
GGGACACCGAGGAAACGCATATGCCTGGCATTACAAATAATTCATGCGAA
GCCAAAGGGAATAGGCATAGCCACATGACCAGTTCAAGTTCCGAACCTAT
AAAACCGCCAGTAGATCCGACCAAAGTTCCTAAAAAGCGCGGTAGAAAGC
GAAACACCTGCGTGCCACAGGTGGTCAAGCGATCAGCGGCTGAGATGGCG
CTTAAGGAGCGCGAGGAGAAGCAACTGACGCCCGTGATCACTAAACGGAA
GAAAAGGGATGTCACCCAAGCGCAAAACTTCGAATCATATCAGATCACGA
ATAAAACCCCTGTACGCCGAAACTCTACCTTGTCGGATATATCGTTCAAC
TCCGATGAGTTGACCCGGGTGGAAAACTTTATAAGCGGAAACACCGAGGA
CCGCATTATACGCATCATGGCCAACGAATTCAGAAAGTCGCACATAATGT
CCGAAGAAGGATTGCTACCCATTCACGAGGAAATACTGCACGGCGATGTT
TACGGCGTTAAGCGTCAGATATTTGTGTGCTGCCACGCGAAAATGGACAT
CAACGAACTACTCACCAGGGACGGCGAGGACTGCCTGGAACTTGCGCTGA
CGAACGACACGGACACCGAGATTGTATCGCTCATCCTGGACGCTCGCATG
ATGACCGACCACCTCTACGAGAACTCAAACACAGCTCTTCATCTGGCGGT
GATAAACCATATAAATATAGAGTCCATTAGGCTGCTGTTGCGCAGAATCG
ATTTGAACAGTCTTCTGCTAACCAACGATGATGGTTATACAGTTTTGCAC
CTGGCAGTGCGCAATAACCAGTTCCTTGTTGTCGAGGCAATCCTTGATAG
TATAGACGAGCGCGAGCTGGGGGAAACGGTGTACAGGAGAACCCTGGAGG
CAGCGAATCCGAATGAGTGGGACGAGAAGGGCTTCGCCAAGTACTACGAT
CGTGCCTGCGAACGGCTGGAGCTGAACAAGACGTTGCTAAAGAACCGTGC
ACATAAGCGGGATGTCATCAATGCATCCGAGGCGAGGGGCGGAAACCCAC
CGCTTTTCTACGCCGTGGAAGGGGAGCAGGAACACTTGTGCTACTTCCTG
CTTGCGCACTTGGCCGATCCCGACGAGGAGAACTTAAGCGGGCATTCCCC
GAAATCGTATCACTACGAATACGCTCGCACGTTGCGCATCAACCTGAAAG
TGGCGCGCGTCATGGAGAAAGTAATTAGCATACTGAATACTTGACATAAA
GTGTGCATTCTGTAAATATATTTAGCCCCAACTGAAAAAAAAAAAAAAAA
AA

LD04951.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5118-RA 1960 CG5118-RA 226..1960 1..1735 8675 100 Plus
CG31922-RA 637 CG31922-RA 497..637 1735..1595 705 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1171955..1172670 716..1 3550 99.7 Minus
chr2L 23010047 chr2L 1170962..1171575 1530..917 3055 99.8 Minus
chr2L 23010047 chr2L 1170685..1170889 1734..1530 1025 100 Minus
chr2L 23010047 chr2L 1171646..1171845 916..717 1000 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1172023..1172738 716..1 3580 100 Minus
2L 23513712 2L 1171030..1171643 1530..917 3070 100 Minus
2L 23513712 2L 1170752..1170957 1735..1530 1030 100 Minus
2L 23513712 2L 1171714..1171913 916..717 1000 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1172023..1172738 716..1 3580 100 Minus
2L 23513712 2L 1171030..1171643 1530..917 3070 100 Minus
2L 23513712 2L 1170752..1170957 1735..1530 1030 100 Minus
2L 23513712 2L 1171714..1171913 916..717 1000 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:30:55 has no hits.

LD04951.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:32:06 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1171646..1171845 717..916 100 <- Minus
chr2L 1170685..1170888 1531..1734 100 <- Minus
chr2L 1170962..1171575 917..1530 99 <- Minus
chr2L 1171955..1172670 1..716 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:35:45 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 1..1575 120..1694 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:23:52 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 1..1575 120..1694 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:12 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 1..1575 120..1694 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:42:42 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 1..1575 120..1694 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:31:15 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 1..1575 120..1694 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:52:08 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 8..1741 1..1734 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:23:52 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 8..1741 1..1734 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:12 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 68..1801 1..1734 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:42:43 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 8..1741 1..1734 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:31:15 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 68..1801 1..1734 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:06 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1170753..1170956 1531..1734 100 <- Minus
2L 1171030..1171643 917..1530 100 <- Minus
2L 1171714..1171913 717..916 100 <- Minus
2L 1172023..1172738 1..716 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:06 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1170753..1170956 1531..1734 100 <- Minus
2L 1171030..1171643 917..1530 100 <- Minus
2L 1171714..1171913 717..916 100 <- Minus
2L 1172023..1172738 1..716 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:06 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1170753..1170956 1531..1734 100 <- Minus
2L 1171030..1171643 917..1530 100 <- Minus
2L 1171714..1171913 717..916 100 <- Minus
2L 1172023..1172738 1..716 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:12 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1170753..1170956 1531..1734 100 <- Minus
arm_2L 1171030..1171643 917..1530 100 <- Minus
arm_2L 1171714..1171913 717..916 100 <- Minus
arm_2L 1172023..1172738 1..716 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:51:41 Download gff for LD04951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1170753..1170956 1531..1734 100 <- Minus
2L 1171030..1171643 917..1530 100 <- Minus
2L 1171714..1171913 717..916 100 <- Minus
2L 1172023..1172738 1..716 100   Minus

LD04951.pep Sequence

Translation from 119 to 1693

> LD04951.pep
MKKVLLTKAQHIQPVVASSSDVLVIKPVGSLRVISISAPHSASTYIQRKS
FQPVYEDIFKLLMKIPDKALTQRVIDAINESNNNDKVAISNHGKQCSCGV
QKVDSSTQTDWDTEETHMPGITNNSCEAKGNRHSHMTSSSSEPIKPPVDP
TKVPKKRGRKRNTCVPQVVKRSAAEMALKEREEKQLTPVITKRKKRDVTQ
AQNFESYQITNKTPVRRNSTLSDISFNSDELTRVENFISGNTEDRIIRIM
ANEFRKSHIMSEEGLLPIHEEILHGDVYGVKRQIFVCCHAKMDINELLTR
DGEDCLELALTNDTDTEIVSLILDARMMTDHLYENSNTALHLAVINHINI
ESIRLLLRRIDLNSLLLTNDDGYTVLHLAVRNNQFLVVEAILDSIDEREL
GETVYRRTLEAANPNEWDEKGFAKYYDRACERLELNKTLLKNRAHKRDVI
NASEARGGNPPLFYAVEGEQEHLCYFLLAHLADPDEENLSGHSPKSYHYE
YARTLRINLKVARVMEKVISILNT*

LD04951.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14730-PA 547 GF14730-PA 1..547 1..524 1627 59.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24606-PA 529 GG24606-PA 1..529 1..524 2164 76.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10335-PA 561 GH10335-PA 1..555 1..523 1256 48.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Charon-PA 524 CG5118-PA 1..524 1..524 2694 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17094-PA 566 GI17094-PA 1..560 1..523 1333 50.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14979-PA 535 GL14979-PA 1..534 1..523 1383 54.8 Plus
Dper\GL15012-PA 229 GL15012-PA 1..228 297..523 768 64.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25409-PA 532 GA25409-PA 1..531 1..523 1374 54.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16619-PA 524 GM16619-PA 1..524 1..524 2541 90.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22921-PA 524 GD22921-PA 1..524 1..524 2529 89.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10852-PA 500 GJ10852-PA 1..496 1..523 1274 50.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14954-PA 603 GK14954-PA 1..596 1..523 1251 47.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15711-PA 531 GE15711-PA 1..531 1..524 2283 80.9 Plus

LD04951.hyp Sequence

Translation from 119 to 1693

> LD04951.hyp
MKKVLLTKAQHIQPVVASSSDVLVIKPVGSLRVISISAPHSASTYIQRKS
FQPVYEDIFKLLMKIPDKALTQRVIDAINESNNNDKVAISNHGKQCSCGV
QKVDSSTQTDWDTEETHMPGITNNSCEAKGNRHSHMTSSSSEPIKPPVDP
TKVPKKRGRKRNTCVPQVVKRSAAEMALKEREEKQLTPVITKRKKRDVTQ
AQNFESYQITNKTPVRRNSTLSDISFNSDELTRVENFISGNTEDRIIRIM
ANEFRKSHIMSEEGLLPIHEEILHGDVYGVKRQIFVCCHAKMDINELLTR
DGEDCLELALTNDTDTEIVSLILDARMMTDHLYENSNTALHLAVINHINI
ESIRLLLRRIDLNSLLLTNDDGYTVLHLAVRNNQFLVVEAILDSIDEREL
GETVYRRTLEAANPNEWDEKGFAKYYDRACERLELNKTLLKNRAHKRDVI
NASEARGGNPPLFYAVEGEQEHLCYFLLAHLADPDEENLSGHSPKSYHYE
YARTLRINLKVARVMEKVISILNT*

LD04951.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5118-PA 524 CG5118-PA 1..524 1..524 2694 100 Plus