Clone LD05057 Report

Search the DGRC for LD05057

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:50
Well:57
Vector:pBS SK-
Associated Gene/TranscriptTaspase1-RA
Protein status:LD05057.pep: gold
Preliminary Size:1600
Sequenced Size:1507

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5241 2001-01-01 Release 2 assignment
CG5241 2001-10-10 Blastp of sequenced clone
CG5241 2003-01-01 Sim4 clustering to Release 3
CG5241 2008-04-29 Release 5.5 accounting
CG5241 2008-08-15 Release 5.9 accounting
Taspase1 2008-12-18 5.12 accounting

Clone Sequence Records

LD05057.complete Sequence

1507 bp (1507 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061074

> LD05057.complete
TTTACGCCGTACAGCGCACGGATTGCAGTTGGGCCAACAACAAGGCGCGA
GCATAAACAGCAATACCAACATGGCCGGCTTCGTCGCGGTGCACACGGGG
GCTGGGAACTGCATCGACGAGACGAAGTACCAGCGGGTGATTAAGGAGGC
CTGCCTGCGCGCCACGGAGATCCTTCGCAACGGCGGATCCGCCGTCGATG
CCTGCGAGGCGGCCATTGTGCGGCTGGAGAACTGCGGCTACACAAACGCC
GGCTATGGCTCCAATCTCTGCATGGACGGCTCTGTGCAGTGCGATGCGGC
TATAATGGATGGCTCAACGCTTAACTTTGGCGCCTGCACGAACGTTAGTC
GGGTGAAGAACCCCATACAGTTGGCGAGACGCATCTGCGATGCCCAGTCC
AGTCCGCAGCTTCTGGAGCGCATTCCACCGATGATCCTCGCCGGCACTGG
AGCGGAACACTATGCCGACGAGGTGGGTTGCTCCATGGTGGAGCCCGGCG
TACTGATCTCATCTAAGGCCAAGTTCCAGTTTAATCACTACAAAAGCAAG
TACGACCTCGTGGTCAACAGCAGATTGGGCAAGGCAACGTCCGAGGAATC
CGTACAAGTGCCGGAACCAGGAAACGAGGTGGAACTTGCCGCTGCTTTGG
ACACAGTGGGAGCGGTATGTGTTGATGGGGCAGGGAACACAGCAGCTGGA
TGTAGCTCCGGTGGCATACTGCTCAAAGTTCCGGGCAGAGTGGGGCAGGC
GGCTACTTATGGTGCCGGCTGTTGGGCCACCGATACGGACGAACTGGCCA
TAGCCACCTGCACAACCGGAAACGGCGAGTACCTGATGAAAACGCTGCTG
GCCCGAGAGATCTGCCATGGGGCATTTAGCAGTGATTGTGCGGTGACCAG
TCTTCACAAGACGTTCAAGCAAAAGTTCCTGGACTCCCCGCTGCTGCCCC
GACAGCAGGATCTGTACGCTGGAGCTCTGACGCTACTCTATTATCCGGGC
CAGAGCAGCGGCGAGGTGATGTGGAGCCACACGACGCAGTCGTTCTGTGT
CGGCTACATGGCAACCAACCAGAGGGTGCCAAAGTTTGTGCATTCGCCGC
TGCCCACGTACAGCGTCCCGGGCCGATCGTGCGTCGTCAATGGCCATAAT
TTCCATTTGCGCATTTAAATGTGGGCTGGCCAACTAGCCGCAGCCCCCAG
CACCTTCCTGCAGCTCCTAGTCCCGCTGCTCTGCATCTGCAATTCATTTG
ATTTAATGTTTAATTGCCGCGACAATCGCTGCCAATGACATATGGGAGCA
GAAGGCGCCTGAGGAGCTGGGACAGCATTATGTGTATATGCTTCATTCTC
TCGGCGAAATATTAAGATAATTAAGCAAATATTTTTATTGTAAAAATCTC
GTAGATCGTAATGTTTGCAGTACTAGTAGTAGCAATGAAATAGGATTTCG
AATATATTGTATCCCTCGTCGAACCGGGTGCGCTAGATAAAAAAAAAAAA
AAAAAAA

LD05057.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Taspase1.b 2035 Taspase1.b 107..1597 1..1491 7455 100 Plus
Taspase1-RA 1671 Taspase1-RA 107..1597 1..1491 7455 100 Plus
Taspase1.a 2250 Taspase1.a 107..1597 1..1491 7455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16076112..16077098 1084..98 4875 99.6 Minus
chr3L 24539361 chr3L 16075638..16076043 1488..1083 2015 99.8 Minus
chr3L 24539361 chr3L 16077173..16077271 99..1 480 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16086351..16087337 1084..98 4935 100 Minus
3L 28110227 3L 16085874..16086282 1491..1083 2045 100 Minus
3L 28110227 3L 16087412..16087510 99..1 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16079451..16080437 1084..98 4935 100 Minus
3L 28103327 3L 16078974..16079382 1491..1083 2045 100 Minus
3L 28103327 3L 16080512..16080610 99..1 495 100 Minus
Blast to na_te.dros performed 2019-03-16 00:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 2874..2930 1481..1426 120 70.2 Minus

LD05057.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:29:45 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16075638..16076041 1085..1488 99 <- Minus
chr3L 16076112..16077097 99..1084 99 <- Minus
chr3L 16077174..16077271 1..98 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:35:55 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
Taspase1-RA 1..1098 71..1168 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:02 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
Taspase1-RA 1..1098 71..1168 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:12:33 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
Taspase1-RA 1..1098 71..1168 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:00 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG5241-RA 1..1098 71..1168 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:03:04 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
Taspase1-RA 1..1098 71..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:22:52 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
Taspase1-RA 1..1486 1..1486 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:02 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
Taspase1-RA 13..1500 1..1488 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:12:33 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
Taspase1-RA 16..1503 1..1488 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:00 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG5241-RA 1..1486 1..1486 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:03:04 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
Taspase1-RA 16..1503 1..1488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:45 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16085877..16086280 1085..1488 100 <- Minus
3L 16086351..16087336 99..1084 100 <- Minus
3L 16087413..16087510 1..98 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:45 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16085877..16086280 1085..1488 100 <- Minus
3L 16086351..16087336 99..1084 100 <- Minus
3L 16087413..16087510 1..98 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:45 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16085877..16086280 1085..1488 100 <- Minus
3L 16086351..16087336 99..1084 100 <- Minus
3L 16087413..16087510 1..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:12:33 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16078977..16079380 1085..1488 100 <- Minus
arm_3L 16079451..16080436 99..1084 100 <- Minus
arm_3L 16080513..16080610 1..98 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:10 Download gff for LD05057.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16078977..16079380 1085..1488 100 <- Minus
3L 16079451..16080436 99..1084 100 <- Minus
3L 16080513..16080610 1..98 100   Minus

LD05057.hyp Sequence

Translation from 0 to 1167

> LD05057.hyp
LRRTAHGLQLGQQQGASINSNTNMAGFVAVHTGAGNCIDETKYQRVIKEA
CLRATEILRNGGSAVDACEAAIVRLENCGYTNAGYGSNLCMDGSVQCDAA
IMDGSTLNFGACTNVSRVKNPIQLARRICDAQSSPQLLERIPPMILAGTG
AEHYADEVGCSMVEPGVLISSKAKFQFNHYKSKYDLVVNSRLGKATSEES
VQVPEPGNEVELAAALDTVGAVCVDGAGNTAAGCSSGGILLKVPGRVGQA
ATYGAGCWATDTDELAIATCTTGNGEYLMKTLLAREICHGAFSSDCAVTS
LHKTFKQKFLDSPLLPRQQDLYAGALTLLYYPGQSSGEVMWSHTTQSFCV
GYMATNQRVPKFVHSPLPTYSVPGRSCVVNGHNFHLRI*

LD05057.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Taspase1-PB 365 CG5241-PB 1..365 24..388 1926 100 Plus
Taspase1-PA 365 CG5241-PA 1..365 24..388 1926 100 Plus
CG7860-PB 332 CG7860-PB 8..254 30..287 287 32.6 Plus
CG7860-PA 332 CG7860-PA 8..254 30..287 287 32.6 Plus

LD05057.pep Sequence

Translation from 70 to 1167

> LD05057.pep
MAGFVAVHTGAGNCIDETKYQRVIKEACLRATEILRNGGSAVDACEAAIV
RLENCGYTNAGYGSNLCMDGSVQCDAAIMDGSTLNFGACTNVSRVKNPIQ
LARRICDAQSSPQLLERIPPMILAGTGAEHYADEVGCSMVEPGVLISSKA
KFQFNHYKSKYDLVVNSRLGKATSEESVQVPEPGNEVELAAALDTVGAVC
VDGAGNTAAGCSSGGILLKVPGRVGQAATYGAGCWATDTDELAIATCTTG
NGEYLMKTLLAREICHGAFSSDCAVTSLHKTFKQKFLDSPLLPRQQDLYA
GALTLLYYPGQSSGEVMWSHTTQSFCVGYMATNQRVPKFVHSPLPTYSVP
GRSCVVNGHNFHLRI*

LD05057.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10660-PA 482 GF10660-PA 1..352 1..353 1785 93.5 Plus
Dana\GF21911-PA 332 GF21911-PA 5..256 4..264 267 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13500-PA 364 GG13500-PA 1..364 1..365 1923 98.9 Plus
Dere\GG17888-PA 331 GG17888-PA 8..253 7..264 299 33.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14708-PA 365 GH14708-PA 1..365 1..365 1719 87.7 Plus
Dgri\GH11081-PA 326 GH11081-PA 17..272 5..286 307 32.2 Plus
Dgri\GH12871-PA 327 GH12871-PA 8..248 7..264 241 31.8 Plus
Dgri\GH22932-PA 393 GH22932-PA 68..314 24..263 166 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tasp1-PB 365 CG5241-PB 1..365 1..365 1926 100 Plus
Tasp1-PA 365 CG5241-PA 1..365 1..365 1926 100 Plus
CG7860-PB 332 CG7860-PB 8..254 7..264 287 32.6 Plus
CG7860-PA 332 CG7860-PA 8..254 7..264 287 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12255-PA 362 GI12255-PA 1..362 1..365 1736 87.9 Plus
Dmoj\GI17598-PA 341 GI17598-PA 37..289 5..286 297 33.3 Plus
Dmoj\GI14971-PA 329 GI14971-PA 5..250 4..264 253 30.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25099-PA 366 GL25099-PA 1..366 1..365 1784 89.9 Plus
Dper\GL16551-PA 325 GL16551-PA 8..264 7..274 265 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18757-PA 366 GA18757-PA 1..366 1..365 1784 89.9 Plus
Dpse\GA20639-PA 325 GA20639-PA 8..264 7..274 261 31.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24449-PA 365 GM24449-PA 1..365 1..365 1945 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12517-PA 365 GD12517-PA 1..365 1..365 1945 99.5 Plus
Dsim\GD24689-PA 332 GD24689-PA 8..255 7..265 299 33.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11486-PA 360 GJ11486-PA 1..360 1..365 1716 87.1 Plus
Dvir\GJ17943-PA 345 GJ17943-PA 37..289 4..286 325 34.3 Plus
Dvir\GJ18932-PA 328 GJ18932-PA 6..304 5..330 247 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23937-PA 380 GK23937-PA 1..380 1..365 1686 82.6 Plus
Dwil\GK18649-PA 334 GK18649-PA 19..278 5..286 296 33.4 Plus
Dwil\GK18410-PA 334 GK18410-PA 19..278 5..286 295 33.4 Plus
Dwil\GK20035-PA 327 GK20035-PA 8..246 7..265 245 31.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19799-PA 365 GE19799-PA 1..365 1..365 1935 98.9 Plus
Dyak\GE22812-PA 298 GE22812-PA 1..298 68..365 1582 98.7 Plus
Dyak\GE17195-PA 331 GE17195-PA 8..254 7..265 285 33 Plus