BDGP Sequence Production Resources |
Search the DGRC for LD05179
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 51 |
Well: | 79 |
Vector: | pBS SK- |
Associated Gene/Transcript | ttm50-RA |
Protein status: | LD05179.pep: gold |
Preliminary Size: | 1819 |
Sequenced Size: | 1727 |
Gene | Date | Evidence |
---|---|---|
CG2713 | 2001-01-01 | Release 2 assignment |
CG2713 | 2001-12-12 | Blastp of sequenced clone |
CG2713 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2713 | 2008-04-29 | Release 5.5 accounting |
ttm50 | 2008-08-15 | Release 5.9 accounting |
ttm50 | 2008-12-18 | 5.12 accounting |
1727 bp (1727 high quality bases) assembled on 2001-12-12
GenBank Submission: AY070535
> LD05179.complete CCGTGCCGGTGGGAAGTTGAAATTTTTGTTGGAATTTTTTATAAGTAAAA AGTCGCTGCCATCCGAGCAGGACTCGTGAACGGCTCTAGGACTCGATATC GGGAAGGAAGGGGGAAGCATGAGCATGAGCATGGCACCGGCCACCGTCCT CCAGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACC AGCACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAG CACCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCAC TTGCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACA CAGCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGC CCCAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCT CTTTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCA AGAAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGC ATGAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATT CTGGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGC CCATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAG CGGATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTC GCGCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGC GCTACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGG ACTTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTT TCTGGCCGAGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAAC AGGGCATGACCGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTAC ATTATGTACCGCCTGGTCAGGGATGCCACGCACTTTGTGGACGGCCATCA TGTGAAGAACCTGGACAACCTTAATCGCGACCTCAAGAAGGTGATTGTTG TGGACTGGGATGCGAATGCCACCAAGATGCATCCGGACAACACATTCGGC TTGGCCCGCTGGCATGGCAACGACGATGATGGCCAACTGCTGGACCTTAT CGCTTTCCTAAAGATAATTGCGCAGAACAACGTGGACGACGTGCGCGAGG TGCTCCACTACTATCGCCAGTTCGACGATCCCATCAACCAGTTCCGGGAG AACCAGCGCAAGCTGGCCGAACAAATGCTGGAGGCGGAACGCATCGAGCA GTCCAAGACCAAGCCAATGGTCAAACAGTGGTCGCGCAACATTCTCGGCC GCTAGGAGGCTGGCCATACCGCACAACCCGTTCCATACGCATACCTTAAC CTTCCGCCTGCGCCGGAGCAACAAACACGCCCTGCAGCAGCACACTGGCC ATATTTTTCGTCGACTTTTGGAGTAGTTAGTGGGAAGCAGTAGCAGACAG CAGACAGCAGGATTGGGAGGCACGCTCTGTCTTTTGCTCCTTTGGGAAAA GACGAGGCGCATGTTTTTGTTTTATTGAATAACTAAACTTGCTTGTTTTT GTTTTTTGGCAATTTAATCGTAATATTATTATTATAAAGAGACGACTTAA CCGTAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 2624764..2625294 | 1091..561 | 2655 | 100 | Minus |
chrX | 22417052 | chrX | 2624033..2624522 | 1704..1215 | 2450 | 100 | Minus |
chrX | 22417052 | chrX | 2625606..2625982 | 377..1 | 1885 | 100 | Minus |
chrX | 22417052 | chrX | 2625350..2625533 | 561..378 | 920 | 100 | Minus |
chrX | 22417052 | chrX | 2624582..2624707 | 1214..1089 | 630 | 100 | Minus |
chr3L | 24539361 | chr3L | 275876..276241 | 761..1126 | 495 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 2730948..2731478 | 1091..561 | 2655 | 100 | Minus |
X | 23542271 | X | 2730206..2730706 | 1715..1215 | 2475 | 99.6 | Minus |
X | 23542271 | X | 2731790..2732166 | 377..1 | 1885 | 100 | Minus |
X | 23542271 | X | 2731534..2731717 | 561..378 | 920 | 100 | Minus |
X | 23542271 | X | 2730766..2730891 | 1214..1089 | 630 | 100 | Minus |
3L | 28110227 | 3L | 275923..276288 | 761..1126 | 495 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 2739046..2739576 | 1091..561 | 2655 | 100 | Minus |
X | 23527363 | X | 2738304..2738804 | 1715..1215 | 2475 | 99.6 | Minus |
X | 23527363 | X | 2739888..2740264 | 377..1 | 1885 | 100 | Minus |
X | 23527363 | X | 2739632..2739815 | 561..378 | 920 | 100 | Minus |
X | 23527363 | X | 2738864..2738989 | 1214..1089 | 630 | 100 | Minus |
3L | 28103327 | 3L | 275923..276288 | 761..1126 | 495 | 75.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2624033..2624522 | 1215..1704 | 100 | <- | Minus |
chrX | 2624582..2624705 | 1091..1214 | 100 | <- | Minus |
chrX | 2624765..2625293 | 562..1090 | 100 | <- | Minus |
chrX | 2625350..2625533 | 378..561 | 100 | <- | Minus |
chrX | 2625606..2625706 | 277..377 | 100 | == | Minus |
chrX | 2625763..2625982 | 1..220 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 1..1287 | 119..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 1..1287 | 119..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 1..1287 | 119..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 1..1287 | 119..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 1..1287 | 119..1405 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 20..1721 | 1..1702 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 20..1721 | 1..1702 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 25..1728 | 1..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 20..1721 | 1..1702 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ttm50-RA | 25..1728 | 1..1704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2731790..2732166 | 1..377 | 100 | Minus | |
X | 2730217..2730706 | 1215..1704 | 100 | <- | Minus |
X | 2730766..2730889 | 1091..1214 | 100 | <- | Minus |
X | 2730949..2731477 | 562..1090 | 100 | <- | Minus |
X | 2731534..2731717 | 378..561 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2731790..2732166 | 1..377 | 100 | Minus | |
X | 2730217..2730706 | 1215..1704 | 100 | <- | Minus |
X | 2730766..2730889 | 1091..1214 | 100 | <- | Minus |
X | 2730949..2731477 | 562..1090 | 100 | <- | Minus |
X | 2731534..2731717 | 378..561 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2731790..2732166 | 1..377 | 100 | Minus | |
X | 2730217..2730706 | 1215..1704 | 100 | <- | Minus |
X | 2730766..2730889 | 1091..1214 | 100 | <- | Minus |
X | 2730949..2731477 | 562..1090 | 100 | <- | Minus |
X | 2731534..2731717 | 378..561 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2624250..2624739 | 1215..1704 | 100 | <- | Minus |
arm_X | 2624799..2624922 | 1091..1214 | 100 | <- | Minus |
arm_X | 2624982..2625510 | 562..1090 | 100 | <- | Minus |
arm_X | 2625567..2625750 | 378..561 | 100 | <- | Minus |
arm_X | 2625823..2626199 | 1..377 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2738864..2738987 | 1091..1214 | 100 | <- | Minus |
X | 2738315..2738804 | 1215..1704 | 100 | <- | Minus |
X | 2739047..2739575 | 562..1090 | 100 | <- | Minus |
X | 2739632..2739815 | 378..561 | 100 | <- | Minus |
X | 2739888..2740264 | 1..377 | 100 | Minus |
Translation from 118 to 1404
> LD05179.pep MSMSMAPATVLQLLRGLSTPRLLTHIHQHRALGNHYHHYHQHYQHQHHLL HHQQQYLRLFTCTALPAAAPALFSILHTARGYSSTTKQEAGATGPNDAPE VAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENERAWKRMKLGFA IFGGSAVAAGFWAVYEFGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSI HYYQRMIQEPSRAKLLPDPLKPPYVQPRYTLVLEMKDVLVHPDWTYQTGW RFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIMYRLV RDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHG NDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLA EQMLEAERIEQSKTKPMVKQWSRNILGR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22482-PA | 411 | GF22482-PA | 3..411 | 6..428 | 1571 | 72.5 | Plus |
Dana\GF25046-PA | 427 | GF25046-PA | 105..425 | 107..426 | 1114 | 67.6 | Plus |
Dana\GF23743-PA | 336 | GF23743-PA | 54..331 | 148..428 | 940 | 61.1 | Plus |
Dana\GF10364-PA | 329 | GF10364-PA | 130..266 | 254..391 | 197 | 33.8 | Plus |
Dana\GF12569-PA | 282 | GF12569-PA | 51..276 | 154..380 | 153 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18609-PA | 422 | GG18609-PA | 1..422 | 1..428 | 1806 | 86.6 | Plus |
Dere\GG14712-PA | 411 | GG14712-PA | 89..409 | 107..426 | 1094 | 63.6 | Plus |
Dere\GG21359-PA | 305 | GG21359-PA | 52..304 | 149..402 | 893 | 61.4 | Plus |
Dere\GG13507-PA | 324 | GG13507-PA | 130..261 | 254..390 | 197 | 34.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17760-PA | 407 | GH17760-PA | 1..407 | 3..428 | 1569 | 73.7 | Plus |
Dgri\GH15740-PA | 410 | GH15740-PA | 89..409 | 107..426 | 1147 | 64.6 | Plus |
Dgri\GH10458-PA | 576 | GH10458-PA | 308..562 | 146..401 | 953 | 68.4 | Plus |
Dgri\GH16757-PA | 341 | GH16757-PA | 128..264 | 254..391 | 194 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ttm50-PB | 428 | CG2713-PB | 1..428 | 1..428 | 2305 | 100 | Plus |
ttm50-PA | 428 | CG2713-PA | 1..428 | 1..428 | 2305 | 100 | Plus |
ttm2-PA | 409 | CG12313-PA | 87..407 | 107..426 | 1119 | 63.4 | Plus |
ttm3-PA | 343 | CG6691-PA | 61..335 | 149..428 | 911 | 59.3 | Plus |
CG5830-PA | 329 | CG5830-PA | 130..276 | 254..406 | 193 | 32 | Plus |
CG5830-PB | 352 | CG5830-PB | 153..299 | 254..406 | 193 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15094-PA | 409 | GI15094-PA | 1..409 | 3..428 | 1539 | 70.8 | Plus |
Dmoj\GI12797-PA | 411 | GI12797-PA | 89..409 | 107..426 | 1118 | 67.6 | Plus |
Dmoj\GI17713-PA | 359 | GI17713-PA | 86..357 | 144..415 | 1020 | 66.5 | Plus |
Dmoj\GI13418-PA | 331 | GI13418-PA | 128..268 | 254..399 | 196 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19807-PA | 310 | GL19807-PA | 23..310 | 141..428 | 1353 | 85.4 | Plus |
Dper\GL16126-PA | 367 | GL16126-PA | 58..365 | 107..426 | 986 | 58.3 | Plus |
Dper\GL25662-PA | 349 | GL25662-PA | 32..343 | 117..428 | 943 | 55.8 | Plus |
Dper\GL12819-PA | 333 | GL12819-PA | 130..261 | 254..390 | 190 | 33.6 | Plus |
Dper\GL19342-PA | 274 | GL19342-PA | 126..257 | 254..386 | 156 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15443-PA | 390 | GA15443-PA | 1..390 | 5..428 | 1464 | 71.5 | Plus |
Dpse\GA11549-PA | 388 | GA11549-PA | 66..386 | 107..426 | 1092 | 62.3 | Plus |
Dpse\GA25377-PA | 349 | GA25377-PA | 45..343 | 125..428 | 945 | 57.2 | Plus |
Dpse\GA19163-PA | 335 | GA19163-PA | 130..261 | 254..390 | 190 | 33.6 | Plus |
Dpse\GA25924-PA | 306 | GA25924-PA | 158..289 | 254..386 | 161 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14328-PA | 401 | GM14328-PA | 80..399 | 107..426 | 1094 | 63.7 | Plus |
Dsec\GM16156-PA | 343 | GM16156-PA | 61..335 | 149..428 | 930 | 60.4 | Plus |
Dsec\GM18857-PA | 149 | GM18857-PA | 87..149 | 366..428 | 333 | 98.4 | Plus |
Dsec\GM18857-PA | 149 | GM18857-PA | 1..86 | 1..86 | 330 | 94.2 | Plus |
Dsec\GM24453-PA | 412 | GM24453-PA | 211..342 | 254..390 | 194 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16356-PA | 428 | GD16356-PA | 1..428 | 1..428 | 2236 | 96.5 | Plus |
Dsim\GD11008-PA | 402 | GD11008-PA | 80..400 | 107..426 | 1083 | 63.2 | Plus |
Dsim\GD24345-PA | 343 | GD24345-PA | 61..335 | 149..428 | 926 | 60 | Plus |
Dsim\GD12523-PA | 331 | GD12523-PA | 130..261 | 254..390 | 192 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18901-PA | 413 | GJ18901-PA | 1..413 | 3..428 | 1561 | 72.8 | Plus |
Dvir\GJ16096-PA | 411 | GJ16096-PA | 89..409 | 107..426 | 1114 | 67.6 | Plus |
Dvir\GJ11495-PA | 354 | GJ11495-PA | 59..339 | 120..401 | 950 | 63.5 | Plus |
Dvir\GJ11778-PA | 329 | GJ11778-PA | 127..258 | 254..390 | 190 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25521-PA | 407 | GK25521-PA | 1..407 | 5..428 | 1504 | 70.8 | Plus |
Dwil\GK14784-PA | 400 | GK14784-PA | 76..399 | 105..428 | 1315 | 75.3 | Plus |
Dwil\GK18701-PA | 375 | GK18701-PA | 35..371 | 80..427 | 1033 | 55.6 | Plus |
Dwil\GK16545-PA | 315 | GK16545-PA | 67..313 | 108..389 | 644 | 46.8 | Plus |
Dwil\GK23622-PA | 325 | GK23622-PA | 131..254 | 254..379 | 191 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16923-PA | 424 | GE16923-PA | 1..424 | 1..428 | 1836 | 85.9 | Plus |
Dyak\GE21075-PA | 409 | GE21075-PA | 87..408 | 107..427 | 1066 | 64.3 | Plus |
Dyak\GE12974-PA | 320 | GE12974-PA | 19..306 | 116..402 | 875 | 55 | Plus |
Dyak\GE23126-PA | 325 | GE23126-PA | 130..261 | 254..390 | 192 | 33.6 | Plus |
Translation from 118 to 1404
> LD05179.hyp MSMSMAPATVLQLLRGLSTPRLLTHIHQHRALGNHYHHYHQHYQHQHHLL HHQQQYLRLFTCTALPAAAPALFSILHTARGYSSTTKQEAGATGPNDAPE VAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENERAWKRMKLGFA IFGGSAVAAGFWAVYEFGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSI HYYQRMIQEPSRAKLLPDPLKPPYVQPRYTLVLEMKDVLVHPDWTYQTGW RFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIMYRLV RDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHG NDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLA EQMLEAERIEQSKTKPMVKQWSRNILGR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ttm50-PB | 428 | CG2713-PB | 1..428 | 1..428 | 2305 | 100 | Plus |
ttm50-PA | 428 | CG2713-PA | 1..428 | 1..428 | 2305 | 100 | Plus |
ttm2-PA | 409 | CG12313-PA | 87..407 | 107..426 | 1119 | 63.4 | Plus |
ttm3-PA | 343 | CG6691-PA | 61..335 | 149..428 | 911 | 59.3 | Plus |
CG5830-PA | 329 | CG5830-PA | 130..276 | 254..406 | 193 | 32 | Plus |