Clone LD05179 Report

Search the DGRC for LD05179

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:51
Well:79
Vector:pBS SK-
Associated Gene/Transcriptttm50-RA
Protein status:LD05179.pep: gold
Preliminary Size:1819
Sequenced Size:1727

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2713 2001-01-01 Release 2 assignment
CG2713 2001-12-12 Blastp of sequenced clone
CG2713 2003-01-01 Sim4 clustering to Release 3
CG2713 2008-04-29 Release 5.5 accounting
ttm50 2008-08-15 Release 5.9 accounting
ttm50 2008-12-18 5.12 accounting

Clone Sequence Records

LD05179.complete Sequence

1727 bp (1727 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070535

> LD05179.complete
CCGTGCCGGTGGGAAGTTGAAATTTTTGTTGGAATTTTTTATAAGTAAAA
AGTCGCTGCCATCCGAGCAGGACTCGTGAACGGCTCTAGGACTCGATATC
GGGAAGGAAGGGGGAAGCATGAGCATGAGCATGGCACCGGCCACCGTCCT
CCAGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACC
AGCACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAG
CACCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCAC
TTGCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACA
CAGCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGC
CCCAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCT
CTTTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCA
AGAAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGC
ATGAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATT
CTGGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGC
CCATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAG
CGGATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTC
GCGCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGC
GCTACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGG
ACTTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTT
TCTGGCCGAGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAAC
AGGGCATGACCGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTAC
ATTATGTACCGCCTGGTCAGGGATGCCACGCACTTTGTGGACGGCCATCA
TGTGAAGAACCTGGACAACCTTAATCGCGACCTCAAGAAGGTGATTGTTG
TGGACTGGGATGCGAATGCCACCAAGATGCATCCGGACAACACATTCGGC
TTGGCCCGCTGGCATGGCAACGACGATGATGGCCAACTGCTGGACCTTAT
CGCTTTCCTAAAGATAATTGCGCAGAACAACGTGGACGACGTGCGCGAGG
TGCTCCACTACTATCGCCAGTTCGACGATCCCATCAACCAGTTCCGGGAG
AACCAGCGCAAGCTGGCCGAACAAATGCTGGAGGCGGAACGCATCGAGCA
GTCCAAGACCAAGCCAATGGTCAAACAGTGGTCGCGCAACATTCTCGGCC
GCTAGGAGGCTGGCCATACCGCACAACCCGTTCCATACGCATACCTTAAC
CTTCCGCCTGCGCCGGAGCAACAAACACGCCCTGCAGCAGCACACTGGCC
ATATTTTTCGTCGACTTTTGGAGTAGTTAGTGGGAAGCAGTAGCAGACAG
CAGACAGCAGGATTGGGAGGCACGCTCTGTCTTTTGCTCCTTTGGGAAAA
GACGAGGCGCATGTTTTTGTTTTATTGAATAACTAAACTTGCTTGTTTTT
GTTTTTTGGCAATTTAATCGTAATATTATTATTATAAAGAGACGACTTAA
CCGTAAAAAAAAAAAAAAAAAAAAAAA

LD05179.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RA 1935 ttm50-RA 114..1828 1..1715 8545 99.8 Plus
ttm2-RA 1504 ttm2-RA 760..1125 761..1126 495 75.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2624764..2625294 1091..561 2655 100 Minus
chrX 22417052 chrX 2624033..2624522 1704..1215 2450 100 Minus
chrX 22417052 chrX 2625606..2625982 377..1 1885 100 Minus
chrX 22417052 chrX 2625350..2625533 561..378 920 100 Minus
chrX 22417052 chrX 2624582..2624707 1214..1089 630 100 Minus
chr3L 24539361 chr3L 275876..276241 761..1126 495 75.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2730948..2731478 1091..561 2655 100 Minus
X 23542271 X 2730206..2730706 1715..1215 2475 99.6 Minus
X 23542271 X 2731790..2732166 377..1 1885 100 Minus
X 23542271 X 2731534..2731717 561..378 920 100 Minus
X 23542271 X 2730766..2730891 1214..1089 630 100 Minus
3L 28110227 3L 275923..276288 761..1126 495 75.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2739046..2739576 1091..561 2655 100 Minus
X 23527363 X 2738304..2738804 1715..1215 2475 99.6 Minus
X 23527363 X 2739888..2740264 377..1 1885 100 Minus
X 23527363 X 2739632..2739815 561..378 920 100 Minus
X 23527363 X 2738864..2738989 1214..1089 630 100 Minus
3L 28103327 3L 275923..276288 761..1126 495 75.6 Plus
Blast to na_te.dros performed on 2019-03-15 17:54:47 has no hits.

LD05179.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:55:29 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2624033..2624522 1215..1704 100 <- Minus
chrX 2624582..2624705 1091..1214 100 <- Minus
chrX 2624765..2625293 562..1090 100 <- Minus
chrX 2625350..2625533 378..561 100 <- Minus
chrX 2625606..2625706 277..377 100 == Minus
chrX 2625763..2625982 1..220 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:36:08 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 1..1287 119..1405 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:22 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 1..1287 119..1405 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:50:36 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 1..1287 119..1405 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:44:31 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 1..1287 119..1405 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:39 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 1..1287 119..1405 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:51:21 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 20..1721 1..1702 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:22 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 20..1721 1..1702 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:50:36 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 25..1728 1..1704 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:44:31 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 20..1721 1..1702 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:39 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 25..1728 1..1704 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:29 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
X 2731790..2732166 1..377 100   Minus
X 2730217..2730706 1215..1704 100 <- Minus
X 2730766..2730889 1091..1214 100 <- Minus
X 2730949..2731477 562..1090 100 <- Minus
X 2731534..2731717 378..561 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:29 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
X 2731790..2732166 1..377 100   Minus
X 2730217..2730706 1215..1704 100 <- Minus
X 2730766..2730889 1091..1214 100 <- Minus
X 2730949..2731477 562..1090 100 <- Minus
X 2731534..2731717 378..561 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:29 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
X 2731790..2732166 1..377 100   Minus
X 2730217..2730706 1215..1704 100 <- Minus
X 2730766..2730889 1091..1214 100 <- Minus
X 2730949..2731477 562..1090 100 <- Minus
X 2731534..2731717 378..561 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:50:36 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2624250..2624739 1215..1704 100 <- Minus
arm_X 2624799..2624922 1091..1214 100 <- Minus
arm_X 2624982..2625510 562..1090 100 <- Minus
arm_X 2625567..2625750 378..561 100 <- Minus
arm_X 2625823..2626199 1..377 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:45 Download gff for LD05179.complete
Subject Subject Range Query Range Percent Splice Strand
X 2738864..2738987 1091..1214 100 <- Minus
X 2738315..2738804 1215..1704 100 <- Minus
X 2739047..2739575 562..1090 100 <- Minus
X 2739632..2739815 378..561 100 <- Minus
X 2739888..2740264 1..377 100   Minus

LD05179.pep Sequence

Translation from 118 to 1404

> LD05179.pep
MSMSMAPATVLQLLRGLSTPRLLTHIHQHRALGNHYHHYHQHYQHQHHLL
HHQQQYLRLFTCTALPAAAPALFSILHTARGYSSTTKQEAGATGPNDAPE
VAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENERAWKRMKLGFA
IFGGSAVAAGFWAVYEFGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSI
HYYQRMIQEPSRAKLLPDPLKPPYVQPRYTLVLEMKDVLVHPDWTYQTGW
RFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIMYRLV
RDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHG
NDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLA
EQMLEAERIEQSKTKPMVKQWSRNILGR*

LD05179.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22482-PA 411 GF22482-PA 3..411 6..428 1571 72.5 Plus
Dana\GF25046-PA 427 GF25046-PA 105..425 107..426 1114 67.6 Plus
Dana\GF23743-PA 336 GF23743-PA 54..331 148..428 940 61.1 Plus
Dana\GF10364-PA 329 GF10364-PA 130..266 254..391 197 33.8 Plus
Dana\GF12569-PA 282 GF12569-PA 51..276 154..380 153 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18609-PA 422 GG18609-PA 1..422 1..428 1806 86.6 Plus
Dere\GG14712-PA 411 GG14712-PA 89..409 107..426 1094 63.6 Plus
Dere\GG21359-PA 305 GG21359-PA 52..304 149..402 893 61.4 Plus
Dere\GG13507-PA 324 GG13507-PA 130..261 254..390 197 34.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17760-PA 407 GH17760-PA 1..407 3..428 1569 73.7 Plus
Dgri\GH15740-PA 410 GH15740-PA 89..409 107..426 1147 64.6 Plus
Dgri\GH10458-PA 576 GH10458-PA 308..562 146..401 953 68.4 Plus
Dgri\GH16757-PA 341 GH16757-PA 128..264 254..391 194 33.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-PB 428 CG2713-PB 1..428 1..428 2305 100 Plus
ttm50-PA 428 CG2713-PA 1..428 1..428 2305 100 Plus
ttm2-PA 409 CG12313-PA 87..407 107..426 1119 63.4 Plus
ttm3-PA 343 CG6691-PA 61..335 149..428 911 59.3 Plus
CG5830-PA 329 CG5830-PA 130..276 254..406 193 32 Plus
CG5830-PB 352 CG5830-PB 153..299 254..406 193 32 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15094-PA 409 GI15094-PA 1..409 3..428 1539 70.8 Plus
Dmoj\GI12797-PA 411 GI12797-PA 89..409 107..426 1118 67.6 Plus
Dmoj\GI17713-PA 359 GI17713-PA 86..357 144..415 1020 66.5 Plus
Dmoj\GI13418-PA 331 GI13418-PA 128..268 254..399 196 32.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19807-PA 310 GL19807-PA 23..310 141..428 1353 85.4 Plus
Dper\GL16126-PA 367 GL16126-PA 58..365 107..426 986 58.3 Plus
Dper\GL25662-PA 349 GL25662-PA 32..343 117..428 943 55.8 Plus
Dper\GL12819-PA 333 GL12819-PA 130..261 254..390 190 33.6 Plus
Dper\GL19342-PA 274 GL19342-PA 126..257 254..386 156 36.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15443-PA 390 GA15443-PA 1..390 5..428 1464 71.5 Plus
Dpse\GA11549-PA 388 GA11549-PA 66..386 107..426 1092 62.3 Plus
Dpse\GA25377-PA 349 GA25377-PA 45..343 125..428 945 57.2 Plus
Dpse\GA19163-PA 335 GA19163-PA 130..261 254..390 190 33.6 Plus
Dpse\GA25924-PA 306 GA25924-PA 158..289 254..386 161 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14328-PA 401 GM14328-PA 80..399 107..426 1094 63.7 Plus
Dsec\GM16156-PA 343 GM16156-PA 61..335 149..428 930 60.4 Plus
Dsec\GM18857-PA 149 GM18857-PA 87..149 366..428 333 98.4 Plus
Dsec\GM18857-PA 149 GM18857-PA 1..86 1..86 330 94.2 Plus
Dsec\GM24453-PA 412 GM24453-PA 211..342 254..390 194 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16356-PA 428 GD16356-PA 1..428 1..428 2236 96.5 Plus
Dsim\GD11008-PA 402 GD11008-PA 80..400 107..426 1083 63.2 Plus
Dsim\GD24345-PA 343 GD24345-PA 61..335 149..428 926 60 Plus
Dsim\GD12523-PA 331 GD12523-PA 130..261 254..390 192 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18901-PA 413 GJ18901-PA 1..413 3..428 1561 72.8 Plus
Dvir\GJ16096-PA 411 GJ16096-PA 89..409 107..426 1114 67.6 Plus
Dvir\GJ11495-PA 354 GJ11495-PA 59..339 120..401 950 63.5 Plus
Dvir\GJ11778-PA 329 GJ11778-PA 127..258 254..390 190 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25521-PA 407 GK25521-PA 1..407 5..428 1504 70.8 Plus
Dwil\GK14784-PA 400 GK14784-PA 76..399 105..428 1315 75.3 Plus
Dwil\GK18701-PA 375 GK18701-PA 35..371 80..427 1033 55.6 Plus
Dwil\GK16545-PA 315 GK16545-PA 67..313 108..389 644 46.8 Plus
Dwil\GK23622-PA 325 GK23622-PA 131..254 254..379 191 34.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16923-PA 424 GE16923-PA 1..424 1..428 1836 85.9 Plus
Dyak\GE21075-PA 409 GE21075-PA 87..408 107..427 1066 64.3 Plus
Dyak\GE12974-PA 320 GE12974-PA 19..306 116..402 875 55 Plus
Dyak\GE23126-PA 325 GE23126-PA 130..261 254..390 192 33.6 Plus

LD05179.hyp Sequence

Translation from 118 to 1404

> LD05179.hyp
MSMSMAPATVLQLLRGLSTPRLLTHIHQHRALGNHYHHYHQHYQHQHHLL
HHQQQYLRLFTCTALPAAAPALFSILHTARGYSSTTKQEAGATGPNDAPE
VAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENERAWKRMKLGFA
IFGGSAVAAGFWAVYEFGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSI
HYYQRMIQEPSRAKLLPDPLKPPYVQPRYTLVLEMKDVLVHPDWTYQTGW
RFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIMYRLV
RDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHG
NDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLA
EQMLEAERIEQSKTKPMVKQWSRNILGR*

LD05179.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-PB 428 CG2713-PB 1..428 1..428 2305 100 Plus
ttm50-PA 428 CG2713-PA 1..428 1..428 2305 100 Plus
ttm2-PA 409 CG12313-PA 87..407 107..426 1119 63.4 Plus
ttm3-PA 343 CG6691-PA 61..335 149..428 911 59.3 Plus
CG5830-PA 329 CG5830-PA 130..276 254..406 193 32 Plus