Clone LD05321 Report

Search the DGRC for LD05321

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:53
Well:21
Vector:pBS SK-
Associated Gene/TranscriptCG6565-RA
Protein status:LD05321.pep: gold
Preliminary Size:2055
Sequenced Size:1920

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6565 2001-01-01 Release 2 assignment
CG6565 2001-11-09 Blastp of sequenced clone
CG6565 2003-01-01 Sim4 clustering to Release 3
CG6565 2008-04-29 Release 5.5 accounting
CG6565 2008-08-15 Release 5.9 accounting
CG6565 2008-12-18 5.12 accounting

Clone Sequence Records

LD05321.complete Sequence

1920 bp (1920 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069339

> LD05321.complete
AACAACAACAGCGGAATAACAACAGAAGCAGCAGACAAATTGCAAGTTGC
ACGTTTTTTCTAATCGGGCAAACATGATAAGTCCGCCCAGATCCTAACCA
AGCTCTCGTGCAGTAACGCTTCCGGCAAACCTATCGGGTGTGTCCTGGCT
AGAAGTACTAAATTCCCAAAGTTTTCTGGCGACAAATGTGCCAAGTGTGC
GGGGGCACAGTAATAGCGAAGGAGCATTAAGAAGTCGCCGCACTTTTGAG
TAGGTTGTTATGCAAGCGGGCGGCCGACGGACAAATTGAATTAGCCGGCA
TGCTGTTCAATCGATTTGTACTGGCCATCAAGAACCAGTCCCGAGAAACG
CTGCGTGCCTGGAGCTACCAATGCGAGTCGATTTTCGCCCAGCGCTCGCG
TCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTCGGTGTATGGAACTCAGG
GTCTGAAGCAGCTATGGCGCGCCTACTACCGCCGGGAGCTGCAGCCTCCG
CTGCGGGGAATGGTGATGAGTGCAGTGGGTCTCGTCGGGCTGAATATCAA
GCGAATGGGTAGCGATGGCTTCGATTGGAACAAGGAGCGCCTGGCCTTGT
CCAACTTTGATCTGTGCCGCCGGGATATTGAGTTTATCAACGCCCTGCCC
AACAATCAGCTGTGCGACCGCTGCCAGGCCAAGAAGATGAAATACTGCTA
CTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGGCCAATCCCAGCCGTCCA
CCAGCAAAGAGGCGGAGACGGATCCGGACACCAGCATCAGCAATTGTCTG
CGACCGTTGGATCTGGACGTGCGCAATGCACCGGCCGGAACGGTACGCAT
TCAGGCCCAGGACGACCAAAAATGGGAGCCGTACTTTAGCAAAAACGAAT
TCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCTTATACTCATACAAGGTT
TATGCTCGATTCGACGACATCACAGCGGACGACTTCCTCCACGTTCAAAC
GGATTTGGATTACCGTCGCCAGTGGGACGACACGGCCCTAAGACTTGAGC
TCATCAGCGAGGATCCCGTCCCGGGCAGCAACTCGCATCTGATATACTGG
GAGATGCAGTGGCCACGACTGTTCGCCAATCGCGACTACGTCTATTGTCG
CCGCTACATAAAAGACGACAACAAGAAGCTGATATTCATTTGCAACCGCG
GAGCCACGCACAACACCTATCCGGCGTTGTCTGGAAAAGTTCGCGTCACT
GACTATTGGAGCCTGATGGTCATCAAGCCCTTTCGCGGTTTCCATGAGCC
AGGCCTCCACTTTGTCCTCACGTACTTCGACGATCCGGGCATACCCATAC
CGCAGAATATTAAGTCCTGGGTTACTCAGAAACAAATGCCCGAGTTCCTC
ACCAAGATGTACGTGGCCACCAAGAACTACGCCTGCTCACGGGCCATCAA
GATGAAGGACATGTTTCACGGATTCGCGCTTATCAATGACGAATATACGG
CTAATGAGCAACGCGGCAGTTGGTTGGGCAGTTTGAGCCGGCGCAAGGTC
AATAGTAAACCCGAAGCAGGTCGTTAACTCCTTTACCATTATATACCTGG
CTGCTCCCGCTCCCATGAGACCTCCCTGCCCAACAGAGCCACGTATCAAA
CCATCCGAAAGCCCAGTTCCATCTTATGTTCATCCCTTCGATCGGCTTTA
AAATTCAGGCGAGAGAAATCGAAACCATTGAACATCAGAGCAAGTGTGCA
ATAGGTGGAAGTTTTGCTCTTAACATGAGTGCCACTTTGATGAGAAACTT
AAAAATAAATATATACCTATATTAGCTATATGGCTAAACCAAAATATTTT
AAGTTTAGAAATTGTTTTAAACGCAAATAGAAATTATTGAAATTAATTGT
ACAAAAAAAAAAAAAAAAAA

LD05321.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-RA 2128 CG6565-RA 178..2090 1..1913 9535 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13373881..13374837 946..1902 4785 100 Plus
chr2L 23010047 chr2L 13372877..13373825 1..949 4730 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13375209..13376176 946..1913 4810 99.8 Plus
2L 23513712 2L 13374205..13375153 1..949 4745 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13375209..13376176 946..1913 4810 99.7 Plus
2L 23513712 2L 13374205..13375153 1..949 4745 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:15:14 has no hits.

LD05321.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:16:19 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13372877..13373823 1..947 99 -> Plus
chr2L 13373883..13374837 948..1902 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:36:33 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 1..1278 300..1577 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:45 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 1..1278 300..1577 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:50:14 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 1..1278 300..1577 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:24 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 1..1278 300..1577 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:09 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 1..1278 300..1577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:53 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 27..1928 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:45 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 27..1928 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:14 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 29..1930 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:25 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 27..1928 1..1902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:09 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
CG6565-RA 29..1930 1..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:19 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13375211..13376165 948..1902 100   Plus
2L 13374205..13375151 1..947 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:19 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13375211..13376165 948..1902 100   Plus
2L 13374205..13375151 1..947 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:19 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13375211..13376165 948..1902 100   Plus
2L 13374205..13375151 1..947 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:14 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13374205..13375151 1..947 100 -> Plus
arm_2L 13375211..13376165 948..1902 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:47 Download gff for LD05321.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13374205..13375151 1..947 100 -> Plus
2L 13375211..13376165 948..1902 100   Plus

LD05321.pep Sequence

Translation from 299 to 1576

> LD05321.pep
MLFNRFVLAIKNQSRETLRAWSYQCESIFAQRSRRVQQLFSFYQSVYGTQ
GLKQLWRAYYRRELQPPLRGMVMSAVGLVGLNIKRMGSDGFDWNKERLAL
SNFDLCRRDIEFINALPNNQLCDRCQAKKMKYCYCQLGNQRCKKGQSQPS
TSKEAETDPDTSISNCLRPLDLDVRNAPAGTVRIQAQDDQKWEPYFSKNE
FSIWRRQERSSLYSYKVYARFDDITADDFLHVQTDLDYRRQWDDTALRLE
LISEDPVPGSNSHLIYWEMQWPRLFANRDYVYCRRYIKDDNKKLIFICNR
GATHNTYPALSGKVRVTDYWSLMVIKPFRGFHEPGLHFVLTYFDDPGIPI
PQNIKSWVTQKQMPEFLTKMYVATKNYACSRAIKMKDMFHGFALINDEYT
ANEQRGSWLGSLSRRKVNSKPEAGR*

LD05321.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23133-PA 429 GF23133-PA 1..429 1..425 2025 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23846-PA 425 GG23846-PA 1..425 1..425 2251 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13462-PA 424 GH13462-PA 1..424 1..425 1876 80.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-PC 425 CG6565-PC 1..425 1..425 2297 100 Plus
CG6565-PB 425 CG6565-PB 1..425 1..425 2297 100 Plus
CG6565-PA 425 CG6565-PA 1..425 1..425 2297 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17216-PA 428 GI17216-PA 1..428 1..425 1876 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26048-PA 437 GL26048-PA 1..431 1..420 1977 84 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19688-PA 437 GA19688-PA 1..431 1..420 1977 84 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10454-PA 427 GM10454-PA 1..427 1..425 2283 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23894-PA 427 GD23894-PA 1..427 1..425 2282 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17973-PA 430 GJ17973-PA 1..430 1..425 1940 83.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15285-PA 449 GK15285-PA 1..434 1..414 1958 82.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18650-PA 427 GE18650-PA 1..427 1..425 2248 97.4 Plus

LD05321.hyp Sequence

Translation from 299 to 1576

> LD05321.hyp
MLFNRFVLAIKNQSRETLRAWSYQCESIFAQRSRRVQQLFSFYQSVYGTQ
GLKQLWRAYYRRELQPPLRGMVMSAVGLVGLNIKRMGSDGFDWNKERLAL
SNFDLCRRDIEFINALPNNQLCDRCQAKKMKYCYCQLGNQRCKKGQSQPS
TSKEAETDPDTSISNCLRPLDLDVRNAPAGTVRIQAQDDQKWEPYFSKNE
FSIWRRQERSSLYSYKVYARFDDITADDFLHVQTDLDYRRQWDDTALRLE
LISEDPVPGSNSHLIYWEMQWPRLFANRDYVYCRRYIKDDNKKLIFICNR
GATHNTYPALSGKVRVTDYWSLMVIKPFRGFHEPGLHFVLTYFDDPGIPI
PQNIKSWVTQKQMPEFLTKMYVATKNYACSRAIKMKDMFHGFALINDEYT
ANEQRGSWLGSLSRRKVNSKPEAGR*

LD05321.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6565-PC 425 CG6565-PC 1..425 1..425 2297 100 Plus
CG6565-PB 425 CG6565-PB 1..425 1..425 2297 100 Plus
CG6565-PA 425 CG6565-PA 1..425 1..425 2297 100 Plus