Clone LD05345 Report

Search the DGRC for LD05345

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:53
Well:45
Vector:pBS SK-
Associated Gene/TranscripteIF2B-delta-RA
Protein status:LD05345.pep: gold
Preliminary Size:2351
Sequenced Size:2067

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10315 2001-01-01 Release 2 assignment
CG10315 2001-11-09 Blastp of sequenced clone
CG10315 2003-01-01 Sim4 clustering to Release 3
eIF2B-delta 2008-04-29 Release 5.5 accounting
eIF2B-delta 2008-08-15 Release 5.9 accounting
eIF2B-delta 2008-12-18 5.12 accounting

Clone Sequence Records

LD05345.complete Sequence

2067 bp (2067 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069341

> LD05345.complete
ATCAACTGGTGGACGTTTTTTTGCCATCGTGAGCAAAACTTTCGAGTTAC
TTTTCCCGAATAATAATATAGAATCGTAAGCTTTCAAAATGGTTTTAACT
AGCGAACAGGTGCCACAGACTTTGAAGAGCAAGCACAAGAAGCAAAGGCA
ACGCAATCGACCGCGCAACAAACGAAATCGCCTGGAAGACAGCCATTCAA
CGACACAAGAAACATCAGCCATCGACGCCACGAGTGCAATGCCCGGAAAT
GCTGTGGATCCATTGGCCACGGAGAAGACTCGTGACCAGATAATGGCCGA
GCGGGAGGCGAAGAAGCTGGCTAAGCAGGCCAAGAAACAGAAAACTGCAC
CGACTCCTACTGCCGCCACTCCTGCTGTTCTGACCACTCCCTCTGCTCCG
GCCACCAAAATCATCACTGAAGTGGAGCAGACCACCATTACCACTAAGCT
GACGACCACCACCACAACAAAGGTGCAGGATGCAGTGGCTTCAAAGACGA
CTCAGCCAGCTGCGGTAAATGGCAAGGATGCGGAGGCGGGTGAAAAGACA
CGCGAGCAGATCAAGGCGGAACGCGAGGCCAAGAAGGCAGCCAAGAAAGC
TGGCAAAGGCGGGGGAGCCAAGGTAGAGGGCATCGCACAACAGCTCGCTG
ACCTGAAAGTAGCAGAAAAAGCTCCAGTCGCAGCCAGTGCTGCACCTTCG
ACAACAGAAGCGGACCAGGAAAAGAAAAAGCCAGCTCTTAGCAAAGCGGA
GCGTCGCGCTATCCAAGAAGCCCAACGGGCAGCCAAGGCCCAGGTACAGA
CTAAAAAGGCCCAGCATGCAGCCAAGGCACCACCCAGCGCAGCTCCCAAA
GGGCCGAACCGGAAGAGCGTTTCCCCCACCACAGCGGCCACCAGCAGTTC
CCCCGTCAAATGTCCAGCCAGCACGCCCAATGTAGACTGCCGGGTGAAGC
TGTTCAACCATCTGGTGTGCGCCAAGGAAGACAGCCAGTTCATCAACGAT
CCACTCGTTCATCCGAGCATTGCGCGCTTGGGTGTTCAGTACGCCAAGCG
CACGGTGGTGGGGTCCAATGCTCGATGCATTGCCTTCCTGCACGCCCTGC
GCCAGGTTGTCCACGACTTTGAGACGCCCGCCAAGAAGGAGTTTGGTCGC
AGCCTGGACGCCGCCGTGAAGCACCACGTAGACCACCTGCACAAGTGCCG
ACCGCTGGCCGTGTCCGTGTCCAATGCGTACAAACAATTCAAGAACCAAC
TGACACAGCTGCCGGCGGATGTTCCCGAAACGGAGTCGAAGGAGCTGCTC
GTCCACTTCATCGATACTTACATTGAAAATCAAATCGGCAAGGCGGCCCA
AGCGATCAGCGGTTTTCTGCAGGAAAAGATCACCGATGGCGACGTGCTGC
TGACCTTCGCCTGTTCCTCCCTCATTCAGTTCATCTGCGAGGAGGCCAAG
CGGCGCCAGGTGGCCTTCCGCGTGATTGTCGTCGATTCGCGACCCGGATG
CGAAGGCCAGGAGCTGCTGCGCCGACTGCACGCCACCGGAATCCCGTGCA
CCTACGTGCTGATCAACGCCGTGGGCTATGTGATGGCGGAGGCCACGAAG
GTGCTGCTGGGAGCACACGCCCTGCTGGCCAACGGATACGTGATGGCGCG
AACGGGCACCGCCCAGGTGGCCCTGGTGGCCAATGCCCACAACGTGCCGG
TGCTCGTGTGCTGCGAGACGCACAAGTTCAGCGAGCGCTTCCAGACGGAC
GCCATCGTCTACAACGAGCTGAGCGATCCCAACCAACTGGTGCGCGGCGA
CAAGTGCCAGCTAAGCAACTGGGCGGCCAAGGGAAAGCTGTTGCCGCTCA
ACCTGAGCTACGACATTACTCCGCCGGAGCTGGTGAGTGCCGTGGTCACC
GAGGTGGCCATCCTGCCCTGCACCAGTGTTCCCGTCATACTCCGCATCAA
GCCAGACATTGGCTACTAATCAGACTTCATCGATCGCTCAGTAGAACTCG
CAGTTGTTGAATAAATAAGTTTTATTACACTTTGATCAAATCGACAAACA
AAAAAAAAAAAAAAAAA

LD05345.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-delta-RA 2099 eIF2B-delta-RA 51..2099 1..2049 10245 100 Plus
eIF2B-delta-RC 2094 eIF2B-delta-RC 129..2063 117..2051 9675 100 Plus
eIF2B-delta-RD 2126 eIF2B-delta-RD 193..2126 116..2049 9670 100 Plus
eIF2B-delta-RD 2126 eIF2B-delta-RD 51..134 1..84 405 98.8 Plus
eIF2B-delta-RC 2094 eIF2B-delta-RC 51..130 1..80 400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19274598..19275363 1284..2049 3830 100 Plus
chr2R 21145070 chr2R 19273315..19273923 116..724 3045 100 Plus
chr2R 21145070 chr2R 19273981..19274543 723..1285 2815 100 Plus
chr2R 21145070 chr2R 19272858..19272937 1..80 385 98.8 Plus
chr2R 21145070 chr2R 19273102..19273142 78..118 190 97.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23388287..23389054 1284..2051 3840 100 Plus
2R 25286936 2R 23387004..23387612 116..724 3045 100 Plus
2R 25286936 2R 23387670..23388232 723..1285 2815 100 Plus
2R 25286936 2R 23386543..23386622 1..80 400 100 Plus
2R 25286936 2R 23386787..23386827 78..118 205 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23389486..23390253 1284..2051 3840 100 Plus
2R 25260384 2R 23388203..23388811 116..724 3045 100 Plus
2R 25260384 2R 23388869..23389431 723..1285 2815 100 Plus
2R 25260384 2R 23387742..23387821 1..80 400 100 Plus
2R 25260384 2R 23387986..23388026 78..118 205 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:59:56 has no hits.

LD05345.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:00:42 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19272858..19272937 1..80 98 -> Plus
chr2R 19273105..19273142 81..118 97 -> Plus
chr2R 19273318..19273923 119..724 100 -> Plus
chr2R 19273983..19274543 725..1285 100 -> Plus
chr2R 19274600..19275363 1286..2049 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:36:40 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 1..1881 89..1969 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:46 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 1..1881 89..1969 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:43 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 1..1881 89..1969 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:25 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 1..1881 89..1969 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:09 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 1..1881 89..1969 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:55 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 18..2066 1..2049 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:46 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 51..2099 1..2049 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:43 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 23..2071 1..2049 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:26 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 18..2066 1..2049 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:09 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-delta-RA 23..2071 1..2049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:42 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23386543..23386622 1..80 100 -> Plus
2R 23386790..23386827 81..118 100 -> Plus
2R 23387007..23387612 119..724 100 -> Plus
2R 23387672..23388232 725..1285 100 -> Plus
2R 23388289..23389052 1286..2049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:42 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23386543..23386622 1..80 100 -> Plus
2R 23386790..23386827 81..118 100 -> Plus
2R 23387007..23387612 119..724 100 -> Plus
2R 23387672..23388232 725..1285 100 -> Plus
2R 23388289..23389052 1286..2049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:42 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23386543..23386622 1..80 100 -> Plus
2R 23386790..23386827 81..118 100 -> Plus
2R 23387007..23387612 119..724 100 -> Plus
2R 23387672..23388232 725..1285 100 -> Plus
2R 23388289..23389052 1286..2049 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:43 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19274066..19274145 1..80 100 -> Plus
arm_2R 19274313..19274350 81..118 100 -> Plus
arm_2R 19274530..19275135 119..724 100 -> Plus
arm_2R 19275195..19275755 725..1285 100 -> Plus
arm_2R 19275812..19276575 1286..2049 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:48 Download gff for LD05345.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23388224..23388829 119..724 100 -> Plus
2R 23388889..23389449 725..1285 100 -> Plus
2R 23389506..23390269 1286..2049 100   Plus
2R 23387760..23387839 1..80 100 -> Plus
2R 23388007..23388044 81..118 100 -> Plus

LD05345.pep Sequence

Translation from 88 to 1968

> LD05345.pep
MVLTSEQVPQTLKSKHKKQRQRNRPRNKRNRLEDSHSTTQETSAIDATSA
MPGNAVDPLATEKTRDQIMAEREAKKLAKQAKKQKTAPTPTAATPAVLTT
PSAPATKIITEVEQTTITTKLTTTTTTKVQDAVASKTTQPAAVNGKDAEA
GEKTREQIKAEREAKKAAKKAGKGGGAKVEGIAQQLADLKVAEKAPVAAS
AAPSTTEADQEKKKPALSKAERRAIQEAQRAAKAQVQTKKAQHAAKAPPS
AAPKGPNRKSVSPTTAATSSSPVKCPASTPNVDCRVKLFNHLVCAKEDSQ
FINDPLVHPSIARLGVQYAKRTVVGSNARCIAFLHALRQVVHDFETPAKK
EFGRSLDAAVKHHVDHLHKCRPLAVSVSNAYKQFKNQLTQLPADVPETES
KELLVHFIDTYIENQIGKAAQAISGFLQEKITDGDVLLTFACSSLIQFIC
EEAKRRQVAFRVIVVDSRPGCEGQELLRRLHATGIPCTYVLINAVGYVMA
EATKVLLGAHALLANGYVMARTGTAQVALVANAHNVPVLVCCETHKFSER
FQTDAIVYNELSDPNQLVRGDKCQLSNWAAKGKLLPLNLSYDITPPELVS
AVVTEVAILPCTSVPVILRIKPDIGY*

LD05345.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13053-PA 655 GF13053-PA 1..655 1..626 2230 75.9 Plus
Dana\GF16217-PA 306 GF16217-PA 123..297 428..614 199 30.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22851-PA 630 GG22851-PA 1..630 1..626 2527 88.2 Plus
Dere\GG11983-PA 306 GG11983-PA 123..297 428..614 197 31.6 Plus
Dere\GG18621-PA 352 GG18621-PA 124..327 395..604 159 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21224-PA 642 GH21224-PA 1..642 1..626 1996 68.6 Plus
Dgri\GH22202-PA 306 GH22202-PA 116..297 421..614 194 30.4 Plus
Dgri\GH12777-PA 352 GH12777-PA 83..327 349..604 153 22.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2Bdelta-PA 626 CG10315-PA 1..626 1..626 3163 100 Plus
eIF2Bdelta-PD 576 CG10315-PD 1..576 51..626 2913 100 Plus
eIF2Bdelta-PB 576 CG10315-PB 1..576 51..626 2913 100 Plus
eIF2Bdelta-PC 576 CG10315-PC 1..576 51..626 2913 100 Plus
eIF2Balpha-PA 306 CG7883-PA 43..297 349..614 211 26.9 Plus
eIF2Bbeta-PA 352 CG2677-PA 89..327 356..604 183 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20509-PA 643 GI20509-PA 1..643 1..626 1904 67.6 Plus
Dmoj\GI21971-PA 306 GI21971-PA 116..297 421..614 197 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16909-PA 632 GL16909-PA 1..632 1..626 2050 73.6 Plus
Dper\GL13494-PA 306 GL13494-PA 109..297 414..614 189 28.9 Plus
Dper\GL19913-PA 352 GL19913-PA 124..327 395..604 154 25.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10239-PA 572 GA10239-PA 1..572 51..626 2027 76 Plus
Dpse\GA20657-PA 306 GA20657-PA 109..297 414..614 189 28.9 Plus
Dpse\GA15423-PA 352 GA15423-PA 124..327 395..604 154 25.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16009-PA 630 GM16009-PA 1..630 1..626 2729 95.6 Plus
Dsec\GM12201-PA 306 GM12201-PA 123..297 428..614 197 31.6 Plus
Dsec\GM19241-PA 352 GM19241-PA 124..327 395..604 153 26.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11760-PA 630 GD11760-PA 1..630 1..626 2721 94.9 Plus
Dsim\GD17524-PA 306 GD17524-PA 123..297 428..614 197 31.6 Plus
Dsim\GD16616-PA 352 GD16616-PA 124..327 395..604 153 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22361-PA 593 GJ22361-PA 15..593 62..626 1882 69.6 Plus
Dvir\GJ14332-PA 306 GJ14332-PA 116..297 421..614 182 30.4 Plus
Dvir\GJ18516-PA 352 GJ18516-PA 124..327 395..604 167 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23180-PA 598 GK23180-PA 12..598 62..626 1791 68.2 Plus
Dwil\GK14086-PA 306 GK14086-PA 43..297 349..614 191 26.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14287-PA 636 GE14287-PA 1..636 1..626 2646 89.6 Plus
Dyak\GE10409-PA 306 GE10409-PA 123..297 428..614 198 32.1 Plus

LD05345.hyp Sequence

Translation from 88 to 1968

> LD05345.hyp
MVLTSEQVPQTLKSKHKKQRQRNRPRNKRNRLEDSHSTTQETSAIDATSA
MPGNAVDPLATEKTRDQIMAEREAKKLAKQAKKQKTAPTPTAATPAVLTT
PSAPATKIITEVEQTTITTKLTTTTTTKVQDAVASKTTQPAAVNGKDAEA
GEKTREQIKAEREAKKAAKKAGKGGGAKVEGIAQQLADLKVAEKAPVAAS
AAPSTTEADQEKKKPALSKAERRAIQEAQRAAKAQVQTKKAQHAAKAPPS
AAPKGPNRKSVSPTTAATSSSPVKCPASTPNVDCRVKLFNHLVCAKEDSQ
FINDPLVHPSIARLGVQYAKRTVVGSNARCIAFLHALRQVVHDFETPAKK
EFGRSLDAAVKHHVDHLHKCRPLAVSVSNAYKQFKNQLTQLPADVPETES
KELLVHFIDTYIENQIGKAAQAISGFLQEKITDGDVLLTFACSSLIQFIC
EEAKRRQVAFRVIVVDSRPGCEGQELLRRLHATGIPCTYVLINAVGYVMA
EATKVLLGAHALLANGYVMARTGTAQVALVANAHNVPVLVCCETHKFSER
FQTDAIVYNELSDPNQLVRGDKCQLSNWAAKGKLLPLNLSYDITPPELVS
AVVTEVAILPCTSVPVILRIKPDIGY*

LD05345.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-delta-PA 626 CG10315-PA 1..626 1..626 3163 100 Plus
eIF2B-delta-PD 576 CG10315-PD 1..576 51..626 2913 100 Plus
eIF2B-delta-PB 576 CG10315-PB 1..576 51..626 2913 100 Plus
eIF2B-delta-PC 576 CG10315-PC 1..576 51..626 2913 100 Plus
eIF2B-alpha-PA 306 CG7883-PA 43..297 349..614 211 26.9 Plus