BDGP Sequence Production Resources |
Search the DGRC for LD05347
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 53 |
Well: | 47 |
Vector: | pBS SK- |
Associated Gene/Transcript | Fim-RA |
Protein status: | LD05347.pep: gold |
Preliminary Size: | 2799 |
Sequenced Size: | 2826 |
Gene | Date | Evidence |
---|---|---|
CG8649 | 2001-11-09 | Blastp of sequenced clone |
CG8649 | 2003-01-01 | Sim4 clustering to Release 3 |
Fim | 2008-04-29 | Release 5.5 accounting |
Fim | 2008-08-15 | Release 5.9 accounting |
Fim | 2008-12-18 | 5.12 accounting |
2826 bp (2826 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069342
> LD05347.complete TACAACCTGCAATTTAGTTTTCTGTTTGTTGTTAAACATCTAACAAAAGC GCTTCGCACGCACAGCAAACCGGTCGATTCCGAATTCAGACGTGCTAAAT AACGTTTGAAAACAAAATTTGCTCGGTTGACGTTGTAAATAACAACACGG AGGCTTTAAATCTGGCTTCATCTTTTTTTTTTTGGTAAAAACCAGCAACA AACAAAACCAGCAACGAGTGTGTATGGGTGAAAAGTTAAGAAAAAAGTAA AAGAAGTTTAAGAATATTAGCACAGAAACGCACAAATACATAGATACGTA TAGGAAAAGGAGCGCGCGGTAAAACAAAAAAGAAGAGGAGCAAAAAGAAG AAAATCGCCGACTGCGAAAACGGCGACAAAGTGAAATTGATTATAAACGG ATAATTTATTTAAAATAATTACCAATCAGCGGCGTCAGTTATAAATAATT AAGAAAGTCAAGAAGAAAAGCAGCAGCAGCACACCACACACACATCGGCA GCGAAAATGGCAACACTTAACAAATTCACAAAAACGCTGTCCATTGATGA AAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCCAACAAAGATG GCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCAGGTGGGCTTC AAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGTACAAGGGCAA ACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAGTTCGAGGCAC TGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATTCAAGACGGTC GTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGTCGAGCATTTC GTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAGCTGGCCTTCT CCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCTGCAACATCTG CTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCATCAAGGATGG TATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGACACAATCGATG AGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGAGTTTGAGAAC TTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCAACATCGTAAA CATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTGGTGCTGGGTC TTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACATCACCCTGGAC AGCTGTCCGGGATTGGCTGGCCTACTCTTCGACAACGAACGTCTCGAGGA TCTGATGAAGATGTCGCCGGAGGCCATCCTTTTGCGTTGGGTCAACCATC ATTTGGAGCGAGCCGGCATCTCGAGGCGGTGCACCAACTTCCAGTCGGAC ATCGTCGATTCTGAGATCTATTCGCATTTGCTGAAGCAAATTGCCGGCAA TGATGCTGATGTCAATCTGGATGCCCTGCGGGAATCCGATCTGCAGTCGC GCGCGGAGATCATGTTGCAGCAGGCCGCCAAGCTCAACTGCCGCAGCTTC CTCACGCCACAGGATGTCGTCAACGGAGTCTACAAACTCAATCTAGCCTT CGTGGCTAATCTGTTCAACAACCATCCAGGATTGGACAAGCCCGAGCAGA TCGAGGGACTCGAGTCCATTGAGGAGACGCGCGAAGAGAAGACCTACCGC AATTGGATGAACTCAATGGGCGTGGCACCGCACGTGAACTGGCTTTACTC CGATTTGGCCGATGGTCTGGTCATTTTCCAGCTGTTCGACGTCATCAAGC CGGGTATTGTCAACTGGAGCCGTGTGCACAAGCGTTTCAGCCCGCTGCGC AAGTTCATGGAAAAGCTGGAGAACTGCAACTATGCGGTGGATCTGGGCAA GCAGCTCAAATTCTCGCTGGTCGGAATCGCAGGCCAGGATCTAAACGATG GCAATGCCACGCTGACGTTGGCTCTCATCTGGCAGCTTATGCGTGCCTAC ACCCTGTCCATTCTGTCCCGCTTGGCCAACACTGGCAACCCCATTATCGA GAAGGAGATCGTCCAGTGGGTGAATAACCGACTGTCGGAGGCAGGCAAAC AGTCGCAGCTGCGTAACTTCAACGATCCGGCCATCGCCGATGGCAAGATC GTGATCGATCTGATCGATGCCATCAAGGAGGGCAGCATTAACTACGAGTT GGTGCGCACTAGCGGAACACAGGAGGATAACCTGGCCAATGCCAAGTATG CCATCTCCATGGCCCGCAAGATCGGCGCCCGTGTCTACGCCCTGCCCGAG GACATCACCGAGGTGAAGCCGAAAATGGTGATGACCGTTTTCGCCTGCAT GATGGCCCTCGACTACGTGCCCAACATGGACAGTGTGGACCAGAACAACC ACAACAGCTCCGCCAACAACAGCAATTAGGCGCCATAGCCACAACTCATT TATACATAAACAAAAGGATGGGATTTTGAAAGGGAAGAACAGAGTGGGAA CTACGTAAATTTGTCGTATTCGCTAATTACTAATAACTCTATTCGATTGC GTTCCTTCCTGCGCTACCAATACATTTTTGTGTTTTTTTTTTATTTCAAT TACTTTTTGTAATTTTTTTATTATATATTTATATATTATATAATTGAGTA TGAGTTTCCCCCTATTGTAATTAAGCAAACAGATTTTAGAGTGTCGCACA TCTGTTTTCGAGCCCGGCGGGGTGTTTCTTAATTAGTTTTGTTTAACAAT TGATTAATTATACAACTGTAACCTTATTTTATAAATAAAGGTTTAGCTTG TTCCGCTTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 17177376..17178488 | 1692..580 | 5565 | 100 | Minus |
chrX | 22417052 | chrX | 17175742..17176326 | 2808..2224 | 2910 | 99.8 | Minus |
chrX | 22417052 | chrX | 17190810..17191389 | 581..1 | 2825 | 99.5 | Minus |
chrX | 22417052 | chrX | 17176704..17176982 | 1971..1693 | 1350 | 98.9 | Minus |
chrX | 22417052 | chrX | 17176384..17176639 | 2226..1971 | 1265 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 17287927..17289039 | 1692..580 | 5565 | 100 | Minus |
X | 23542271 | X | 17286290..17286878 | 2812..2224 | 2945 | 100 | Minus |
X | 23542271 | X | 17301360..17301940 | 581..1 | 2905 | 100 | Minus |
X | 23542271 | X | 17287256..17287534 | 1971..1693 | 1395 | 100 | Minus |
X | 23542271 | X | 17286936..17287191 | 2226..1971 | 1280 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 17296025..17297137 | 1692..580 | 5565 | 100 | Minus |
X | 23527363 | X | 17294388..17294976 | 2812..2224 | 2945 | 100 | Minus |
X | 23527363 | X | 17309458..17310038 | 581..1 | 2905 | 100 | Minus |
X | 23527363 | X | 17295354..17295632 | 1971..1693 | 1395 | 100 | Minus |
X | 23527363 | X | 17295034..17295289 | 2226..1971 | 1280 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 17175742..17175904 | 2646..2808 | 99 | == | Minus |
chrX | 17175968..17176324 | 2226..2582 | 100 | <- | Minus |
chrX | 17176385..17176638 | 1972..2225 | 99 | <- | Minus |
chrX | 17176704..17176982 | 1693..1971 | 98 | <- | Minus |
chrX | 17177376..17178486 | 582..1692 | 100 | <- | Minus |
chrX | 17190810..17191389 | 1..581 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 1..1923 | 507..2429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 1..1923 | 507..2429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 1..1923 | 507..2429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 1..1923 | 507..2429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 1..1923 | 507..2429 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 39..2846 | 1..2808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 39..2846 | 1..2808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 1..2797 | 12..2808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 39..2846 | 1..2808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fim-RA | 1..2797 | 12..2808 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17286294..17286876 | 2226..2808 | 100 | <- | Minus |
X | 17286937..17287190 | 1972..2225 | 100 | <- | Minus |
X | 17287256..17287534 | 1693..1971 | 100 | <- | Minus |
X | 17287927..17289037 | 582..1692 | 100 | <- | Minus |
X | 17301360..17301940 | 1..581 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17286294..17286876 | 2226..2808 | 100 | <- | Minus |
X | 17286937..17287190 | 1972..2225 | 100 | <- | Minus |
X | 17287256..17287534 | 1693..1971 | 100 | <- | Minus |
X | 17287927..17289037 | 582..1692 | 100 | <- | Minus |
X | 17301360..17301940 | 1..581 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17286294..17286876 | 2226..2808 | 100 | <- | Minus |
X | 17286937..17287190 | 1972..2225 | 100 | <- | Minus |
X | 17287256..17287534 | 1693..1971 | 100 | <- | Minus |
X | 17287927..17289037 | 582..1692 | 100 | <- | Minus |
X | 17301360..17301940 | 1..581 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 17180327..17180909 | 2226..2808 | 100 | <- | Minus |
arm_X | 17180970..17181223 | 1972..2225 | 100 | <- | Minus |
arm_X | 17181289..17181567 | 1693..1971 | 100 | <- | Minus |
arm_X | 17181960..17183070 | 582..1692 | 100 | <- | Minus |
arm_X | 17195393..17195973 | 1..581 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17295035..17295288 | 1972..2225 | 100 | <- | Minus |
X | 17295354..17295632 | 1693..1971 | 100 | <- | Minus |
X | 17294392..17294974 | 2226..2808 | 100 | <- | Minus |
X | 17296025..17297135 | 582..1692 | 100 | <- | Minus |
X | 17309458..17310038 | 1..581 | 100 | Minus |
Translation from 506 to 2428
> LD05347.pep MATLNKFTKTLSIDEKAEIKEKFIELDANKDGFIDLHELKDALNQVGFKL AGYQVREMIDEYKGKQLTAFQGKLNLEEFEALCLDLKSKDVASTFKTVVS KKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDKDLQHLLP IDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLT LALVSSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSC PGLAGLLFDNERLEDLMKMSPEAILLRWVNHHLERAGISRRCTNFQSDIV DSEIYSHLLKQIAGNDADVNLDALRESDLQSRAEIMLQQAAKLNCRSFLT PQDVVNGVYKLNLAFVANLFNNHPGLDKPEQIEGLESIEETREEKTYRNW MNSMGVAPHVNWLYSDLADGLVIFQLFDVIKPGIVNWSRVHKRFSPLRKF MEKLENCNYAVDLGKQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTL SILSRLANTGNPIIEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVI DLIDAIKEGSINYELVRTSGTQEDNLANAKYAISMARKIGARVYALPEDI TEVKPKMVMTVFACMMALDYVPNMDSVDQNNHNSSANNSN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22618-PA | 651 | GF22618-PA | 1..637 | 1..636 | 3211 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18187-PA | 641 | GG18187-PA | 17..641 | 16..640 | 3283 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17670-PA | 639 | GH17670-PA | 1..629 | 1..629 | 3266 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fim-PA | 640 | CG8649-PA | 1..640 | 1..640 | 3285 | 100 | Plus |
Fim-PD | 641 | CG8649-PD | 17..641 | 16..640 | 3171 | 98.7 | Plus |
Fim-PC | 616 | CG8649-PC | 2..616 | 26..640 | 3164 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11134-PA | 640 | GI11134-PA | 17..630 | 16..629 | 3136 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19835-PA | 645 | GL19835-PA | 1..645 | 1..640 | 3314 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21237-PA | 645 | GA21237-PA | 1..645 | 1..640 | 3315 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13322-PA | 641 | GM13322-PA | 17..641 | 16..640 | 3284 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15680-PA | 582 | GD15680-PA | 1..582 | 58..640 | 2995 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19059-PA | 637 | GJ19059-PA | 12..636 | 12..635 | 3187 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25227-PA | 637 | GK25227-PA | 1..636 | 1..635 | 3188 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15602-PA | 641 | GE15602-PA | 17..641 | 16..640 | 3282 | 98.4 | Plus |
Translation from 506 to 2428
> LD05347.hyp MATLNKFTKTLSIDEKAEIKEKFIELDANKDGFIDLHELKDALNQVGFKL AGYQVREMIDEYKGKQLTAFQGKLNLEEFEALCLDLKSKDVASTFKTVVS KKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDKDLQHLLP IDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLT LALVSSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSC PGLAGLLFDNERLEDLMKMSPEAILLRWVNHHLERAGISRRCTNFQSDIV DSEIYSHLLKQIAGNDADVNLDALRESDLQSRAEIMLQQAAKLNCRSFLT PQDVVNGVYKLNLAFVANLFNNHPGLDKPEQIEGLESIEETREEKTYRNW MNSMGVAPHVNWLYSDLADGLVIFQLFDVIKPGIVNWSRVHKRFSPLRKF MEKLENCNYAVDLGKQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTL SILSRLANTGNPIIEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVI DLIDAIKEGSINYELVRTSGTQEDNLANAKYAISMARKIGARVYALPEDI TEVKPKMVMTVFACMMALDYVPNMDSVDQNNHNSSANNSN*