Clone LD05347 Report

Search the DGRC for LD05347

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:53
Well:47
Vector:pBS SK-
Associated Gene/TranscriptFim-RA
Protein status:LD05347.pep: gold
Preliminary Size:2799
Sequenced Size:2826

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8649 2001-11-09 Blastp of sequenced clone
CG8649 2003-01-01 Sim4 clustering to Release 3
Fim 2008-04-29 Release 5.5 accounting
Fim 2008-08-15 Release 5.9 accounting
Fim 2008-12-18 5.12 accounting

Clone Sequence Records

LD05347.complete Sequence

2826 bp (2826 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069342

> LD05347.complete
TACAACCTGCAATTTAGTTTTCTGTTTGTTGTTAAACATCTAACAAAAGC
GCTTCGCACGCACAGCAAACCGGTCGATTCCGAATTCAGACGTGCTAAAT
AACGTTTGAAAACAAAATTTGCTCGGTTGACGTTGTAAATAACAACACGG
AGGCTTTAAATCTGGCTTCATCTTTTTTTTTTTGGTAAAAACCAGCAACA
AACAAAACCAGCAACGAGTGTGTATGGGTGAAAAGTTAAGAAAAAAGTAA
AAGAAGTTTAAGAATATTAGCACAGAAACGCACAAATACATAGATACGTA
TAGGAAAAGGAGCGCGCGGTAAAACAAAAAAGAAGAGGAGCAAAAAGAAG
AAAATCGCCGACTGCGAAAACGGCGACAAAGTGAAATTGATTATAAACGG
ATAATTTATTTAAAATAATTACCAATCAGCGGCGTCAGTTATAAATAATT
AAGAAAGTCAAGAAGAAAAGCAGCAGCAGCACACCACACACACATCGGCA
GCGAAAATGGCAACACTTAACAAATTCACAAAAACGCTGTCCATTGATGA
AAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCCAACAAAGATG
GCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCAGGTGGGCTTC
AAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGTACAAGGGCAA
ACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAGTTCGAGGCAC
TGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATTCAAGACGGTC
GTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGTCGAGCATTTC
GTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAGCTGGCCTTCT
CCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCTGCAACATCTG
CTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCATCAAGGATGG
TATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGACACAATCGATG
AGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGAGTTTGAGAAC
TTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCAACATCGTAAA
CATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTGGTGCTGGGTC
TTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACATCACCCTGGAC
AGCTGTCCGGGATTGGCTGGCCTACTCTTCGACAACGAACGTCTCGAGGA
TCTGATGAAGATGTCGCCGGAGGCCATCCTTTTGCGTTGGGTCAACCATC
ATTTGGAGCGAGCCGGCATCTCGAGGCGGTGCACCAACTTCCAGTCGGAC
ATCGTCGATTCTGAGATCTATTCGCATTTGCTGAAGCAAATTGCCGGCAA
TGATGCTGATGTCAATCTGGATGCCCTGCGGGAATCCGATCTGCAGTCGC
GCGCGGAGATCATGTTGCAGCAGGCCGCCAAGCTCAACTGCCGCAGCTTC
CTCACGCCACAGGATGTCGTCAACGGAGTCTACAAACTCAATCTAGCCTT
CGTGGCTAATCTGTTCAACAACCATCCAGGATTGGACAAGCCCGAGCAGA
TCGAGGGACTCGAGTCCATTGAGGAGACGCGCGAAGAGAAGACCTACCGC
AATTGGATGAACTCAATGGGCGTGGCACCGCACGTGAACTGGCTTTACTC
CGATTTGGCCGATGGTCTGGTCATTTTCCAGCTGTTCGACGTCATCAAGC
CGGGTATTGTCAACTGGAGCCGTGTGCACAAGCGTTTCAGCCCGCTGCGC
AAGTTCATGGAAAAGCTGGAGAACTGCAACTATGCGGTGGATCTGGGCAA
GCAGCTCAAATTCTCGCTGGTCGGAATCGCAGGCCAGGATCTAAACGATG
GCAATGCCACGCTGACGTTGGCTCTCATCTGGCAGCTTATGCGTGCCTAC
ACCCTGTCCATTCTGTCCCGCTTGGCCAACACTGGCAACCCCATTATCGA
GAAGGAGATCGTCCAGTGGGTGAATAACCGACTGTCGGAGGCAGGCAAAC
AGTCGCAGCTGCGTAACTTCAACGATCCGGCCATCGCCGATGGCAAGATC
GTGATCGATCTGATCGATGCCATCAAGGAGGGCAGCATTAACTACGAGTT
GGTGCGCACTAGCGGAACACAGGAGGATAACCTGGCCAATGCCAAGTATG
CCATCTCCATGGCCCGCAAGATCGGCGCCCGTGTCTACGCCCTGCCCGAG
GACATCACCGAGGTGAAGCCGAAAATGGTGATGACCGTTTTCGCCTGCAT
GATGGCCCTCGACTACGTGCCCAACATGGACAGTGTGGACCAGAACAACC
ACAACAGCTCCGCCAACAACAGCAATTAGGCGCCATAGCCACAACTCATT
TATACATAAACAAAAGGATGGGATTTTGAAAGGGAAGAACAGAGTGGGAA
CTACGTAAATTTGTCGTATTCGCTAATTACTAATAACTCTATTCGATTGC
GTTCCTTCCTGCGCTACCAATACATTTTTGTGTTTTTTTTTTATTTCAAT
TACTTTTTGTAATTTTTTTATTATATATTTATATATTATATAATTGAGTA
TGAGTTTCCCCCTATTGTAATTAAGCAAACAGATTTTAGAGTGTCGCACA
TCTGTTTTCGAGCCCGGCGGGGTGTTTCTTAATTAGTTTTGTTTAACAAT
TGATTAATTATACAACTGTAACCTTATTTTATAAATAAAGGTTTAGCTTG
TTCCGCTTAAAAAAAAAAAAAAAAAA

LD05347.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-RA 3459 Fim-RA 52..2863 1..2812 14060 100 Plus
Fim-RC 3270 Fim-RC 452..2683 581..2812 11160 100 Plus
Fim.a 3293 Fim.a 475..2706 581..2812 11160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17177376..17178488 1692..580 5565 100 Minus
chrX 22417052 chrX 17175742..17176326 2808..2224 2910 99.8 Minus
chrX 22417052 chrX 17190810..17191389 581..1 2825 99.5 Minus
chrX 22417052 chrX 17176704..17176982 1971..1693 1350 98.9 Minus
chrX 22417052 chrX 17176384..17176639 2226..1971 1265 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17287927..17289039 1692..580 5565 100 Minus
X 23542271 X 17286290..17286878 2812..2224 2945 100 Minus
X 23542271 X 17301360..17301940 581..1 2905 100 Minus
X 23542271 X 17287256..17287534 1971..1693 1395 100 Minus
X 23542271 X 17286936..17287191 2226..1971 1280 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17296025..17297137 1692..580 5565 100 Minus
X 23527363 X 17294388..17294976 2812..2224 2945 100 Minus
X 23527363 X 17309458..17310038 581..1 2905 100 Minus
X 23527363 X 17295354..17295632 1971..1693 1395 100 Minus
X 23527363 X 17295034..17295289 2226..1971 1280 100 Minus
Blast to na_te.dros performed 2019-03-15 18:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2599..2666 2394..2463 128 68.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2395 459..515 118 71.2 Plus

LD05347.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:22:16 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17175742..17175904 2646..2808 99 == Minus
chrX 17175968..17176324 2226..2582 100 <- Minus
chrX 17176385..17176638 1972..2225 99 <- Minus
chrX 17176704..17176982 1693..1971 98 <- Minus
chrX 17177376..17178486 582..1692 100 <- Minus
chrX 17190810..17191389 1..581 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:34:22 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1..1923 507..2429 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:47 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1..1923 507..2429 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:04 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1..1923 507..2429 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:27 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1..1923 507..2429 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:12 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1..1923 507..2429 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:34:22 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 39..2846 1..2808 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:47 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 39..2846 1..2808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:04 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1..2797 12..2808 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:27 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 39..2846 1..2808 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:12 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
Fim-RA 1..2797 12..2808 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:16 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
X 17286294..17286876 2226..2808 100 <- Minus
X 17286937..17287190 1972..2225 100 <- Minus
X 17287256..17287534 1693..1971 100 <- Minus
X 17287927..17289037 582..1692 100 <- Minus
X 17301360..17301940 1..581 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:16 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
X 17286294..17286876 2226..2808 100 <- Minus
X 17286937..17287190 1972..2225 100 <- Minus
X 17287256..17287534 1693..1971 100 <- Minus
X 17287927..17289037 582..1692 100 <- Minus
X 17301360..17301940 1..581 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:16 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
X 17286294..17286876 2226..2808 100 <- Minus
X 17286937..17287190 1972..2225 100 <- Minus
X 17287256..17287534 1693..1971 100 <- Minus
X 17287927..17289037 582..1692 100 <- Minus
X 17301360..17301940 1..581 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:04 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17180327..17180909 2226..2808 100 <- Minus
arm_X 17180970..17181223 1972..2225 100 <- Minus
arm_X 17181289..17181567 1693..1971 100 <- Minus
arm_X 17181960..17183070 582..1692 100 <- Minus
arm_X 17195393..17195973 1..581 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:50 Download gff for LD05347.complete
Subject Subject Range Query Range Percent Splice Strand
X 17295035..17295288 1972..2225 100 <- Minus
X 17295354..17295632 1693..1971 100 <- Minus
X 17294392..17294974 2226..2808 100 <- Minus
X 17296025..17297135 582..1692 100 <- Minus
X 17309458..17310038 1..581 100   Minus

LD05347.pep Sequence

Translation from 506 to 2428

> LD05347.pep
MATLNKFTKTLSIDEKAEIKEKFIELDANKDGFIDLHELKDALNQVGFKL
AGYQVREMIDEYKGKQLTAFQGKLNLEEFEALCLDLKSKDVASTFKTVVS
KKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDKDLQHLLP
IDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLT
LALVSSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSC
PGLAGLLFDNERLEDLMKMSPEAILLRWVNHHLERAGISRRCTNFQSDIV
DSEIYSHLLKQIAGNDADVNLDALRESDLQSRAEIMLQQAAKLNCRSFLT
PQDVVNGVYKLNLAFVANLFNNHPGLDKPEQIEGLESIEETREEKTYRNW
MNSMGVAPHVNWLYSDLADGLVIFQLFDVIKPGIVNWSRVHKRFSPLRKF
MEKLENCNYAVDLGKQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTL
SILSRLANTGNPIIEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVI
DLIDAIKEGSINYELVRTSGTQEDNLANAKYAISMARKIGARVYALPEDI
TEVKPKMVMTVFACMMALDYVPNMDSVDQNNHNSSANNSN*

LD05347.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22618-PA 651 GF22618-PA 1..637 1..636 3211 94.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18187-PA 641 GG18187-PA 17..641 16..640 3283 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17670-PA 639 GH17670-PA 1..629 1..629 3266 96.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-PA 640 CG8649-PA 1..640 1..640 3285 100 Plus
Fim-PD 641 CG8649-PD 17..641 16..640 3171 98.7 Plus
Fim-PC 616 CG8649-PC 2..616 26..640 3164 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11134-PA 640 GI11134-PA 17..630 16..629 3136 95.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19835-PA 645 GL19835-PA 1..645 1..640 3314 96.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21237-PA 645 GA21237-PA 1..645 1..640 3315 96.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13322-PA 641 GM13322-PA 17..641 16..640 3284 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15680-PA 582 GD15680-PA 1..582 58..640 2995 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19059-PA 637 GJ19059-PA 12..636 12..635 3187 95.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25227-PA 637 GK25227-PA 1..636 1..635 3188 94.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15602-PA 641 GE15602-PA 17..641 16..640 3282 98.4 Plus

LD05347.hyp Sequence

Translation from 506 to 2428

> LD05347.hyp
MATLNKFTKTLSIDEKAEIKEKFIELDANKDGFIDLHELKDALNQVGFKL
AGYQVREMIDEYKGKQLTAFQGKLNLEEFEALCLDLKSKDVASTFKTVVS
KKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDKDLQHLLP
IDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLT
LALVSSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSC
PGLAGLLFDNERLEDLMKMSPEAILLRWVNHHLERAGISRRCTNFQSDIV
DSEIYSHLLKQIAGNDADVNLDALRESDLQSRAEIMLQQAAKLNCRSFLT
PQDVVNGVYKLNLAFVANLFNNHPGLDKPEQIEGLESIEETREEKTYRNW
MNSMGVAPHVNWLYSDLADGLVIFQLFDVIKPGIVNWSRVHKRFSPLRKF
MEKLENCNYAVDLGKQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTL
SILSRLANTGNPIIEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVI
DLIDAIKEGSINYELVRTSGTQEDNLANAKYAISMARKIGARVYALPEDI
TEVKPKMVMTVFACMMALDYVPNMDSVDQNNHNSSANNSN*

LD05347.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Fim-PA 640 CG8649-PA 1..640 1..640 3285 100 Plus
Fim-PD 641 CG8649-PD 17..641 16..640 3171 98.7 Plus
Fim-PC 616 CG8649-PC 2..616 26..640 3164 100 Plus