Clone LD05408 Report

Search the DGRC for LD05408

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:54
Well:8
Vector:pBS SK-
Associated Gene/Transcriptdah-RA
Protein status:LD05408.pep: gold
Sequenced Size:2309

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6157 2003-01-01 Sim4 clustering to Release 3
CG6157 2004-10-13 Blastp of sequenced clone
dah 2008-04-29 Release 5.5 accounting
dah 2008-08-15 Release 5.9 accounting
dah 2008-12-18 5.12 accounting

Clone Sequence Records

LD05408.complete Sequence

2309 bp (2309 high quality bases) assembled on 2004-10-13

GenBank Submission: BT016120

> LD05408.complete
CGGAAGAGGAAGAGATCGCGAGAAACGACGCGTTTAAAAGAGACTGAAAT
TAATTCGAGAATCAAGGGAAATATATAACAATAAACGCCTGACAAAATGC
TGAGATCGTCGGTGCCCGTGCAGCTGACAAAACTGCGAAATAGCGCCGAG
GCCGTGGCGTCCATTGCCCGCGAAAAGGGATCCCAAGGTGGCCAAGGACA
AAAGCAACAGGTGGACAAAGAGCTATCCACCATCATGGATGACTTGCAGC
GGGATTACGGGAATTACAAGTACACGGTATACCGGTGCGCCAGTAAATTT
GTGGCGCTGCAAAAGATATTTCACACTGGAAAAATCCCCTACAAGCTGGT
TTTGGCCATTTTGGATCGCCATAACTTGAGTGGTGGCCTGGAACTGATGG
TTCCTCCATTCCAGTTGACCTCCCTGCTGCACGATGTATACTTTGCCTGC
GAGAAACTAGGCCATTTCAACCAGGATGCGAACTATAAACTGGACAGGGC
AACCGGGCTGTTGGCCAACTTCTTCTGGAATGTCTACGATCCGCAACGCA
GACACTCCATATCCCTGTTAGAGATCAGGATCACCTTCATACTGCTGTGC
AAGCTATATAGCAGCGATCACCTGGTGGGCGACATCTTTGGCCTGCTGGC
CGATCCCAAGTCGCAGATCATCTCCAGATATGCATTCGAACAGCTCCTAG
CCACGCTGAGCAAGTTACTCAGCTATTTGGGCGAGGCCAAGGCCTATGGC
GTCCACAATCTTCCGTTGGCTATGGAGCAGTGCTTTGCCCGCTGTCCGCA
TGGCGTTGGTGGACTGACCGAGCCGCAGTTCCACAAACTCTGGACGGGAG
CGGGTGTCCAGACGAGATTCCTGATCTATGGCAATCTGCTGGCACTGGTG
AAACGCATCGAGGACACCGAGCATTTGATTCACAGTAATTCTTGTGCCGG
CTGCCGCAAGGAGCACATTGTGGGCATACGTTTCCGGTGTCAGGTGTGTA
GGGATATATCGTTGTGCCTGCCCTGCTTTGCAGTGGGCTTCGCTGGTGGT
CGCCACGAGCCGGGTCATCGGATGTGCGAGGTCTTCGTGGAGGATCAGCC
GCCATTGCGTTGGACCCGCCACCTGGCCAGGCTGTGCGGCTGGCTGGTGA
TGCCGCGCAAAACACAGGAGGAGGAGCGTCGCGGCTTCTGTAATGCGCAG
GAGAGTGGGCCCGCCTTGGGTCAATCCGCTGCCACGCCCATTCCCGCAGA
GACGCGCAGTGTGCGCAGTCAGTGCCAGGAGAAGGACCGCACAGTTGTCC
TGCAGCAACAGCAGCAGGAGCTCTGCTCCCTGACGGGTCTAGCCAGCGAG
GCGTCCAGCAGGCTGCAGTCCATCATCGATCGATTGCTTTTGCAAAATGC
GAAGCTGGAAACCCAGCTGCAAACAGTGGCCACCGCATCTAGTTCGGAAA
TATCGCAGTTTCTGAGCGCCCATCAGTGCTTTCTGCTGCAGATTATCGAG
GATATGCGACAGCTATCACATGCCTCAGCGGTAACTTCGCCGCCACCTGC
GCCAGCTGCCCAAGTGGCGCCTTCAGCTGCGCCCCTAGTCAGCTCCACGT
TCCTTAGCTCCAGCACGCCTCAGCGACAGATGCTATTCGACATGTATGCG
CCCGTGGGTGCCAATCTCACGCACTCCATAAATGGCGCCGACTTGAATCG
CAGCTATCTGGAGGCAAACAAATCGGATTACTCGCTCAACGACATAAGCT
TGTGGTTCGACCAGCGTCGCTCGAGTGTCCAGCCAGGACAAGGACCTGGT
TCCCTGCCGGCTCCTCTGCCGCTGCCCATGCCGCTGGGTGCTCTACTGGA
ACAGCAGCCGGCAAACGGCGGAGATGGCCGCGACACCGAGATGGTGAACT
TTAAGCTGCTGCTGCACAAGGTCAAGGAGATCGTCGAGGACTCGTACAGC
GATAATGCCGAACTGTCGGCGGCCACGCAAAATCTGGAGAACGTTCTCGA
TAGCATCATCAAGAGCGAGGAGCAGCAGCGGCGCATCAGCACGTGAGGAT
CCGGATCGGATACCAACTCCCATCGATTCCAGCCAGACCAAGTCCACTTA
GCTTTAAGTTGTAAAGTTGTTCTAAAGTAATCGTGACAAAATGACACAAC
CGAGTCATGCATTTATTATATCCTTCTTCCTTTTCCCATGTGCTTTAACA
TTCGCGTAAATGCTTTAATTTGTAAACTTACAACTCTGACAAGAATGCAA
TACAACAAAATGTTTTTATAAAAATATACAATGCAAAAAACAAAAAAAAA
AAAAAAAAA

LD05408.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
dah-RA 2383 dah-RA 37..2328 1..2292 11460 100 Plus
dah.b 2345 dah.b 550..2290 552..2292 8705 100 Plus
dah.a 2207 dah.a 412..2152 552..2292 8705 100 Plus
dah.b 2345 dah.b 8..549 1..542 2710 100 Plus
dah.a 2207 dah.a 8..283 1..276 1380 100 Plus
dah.a 2207 dah.a 283..411 414..542 645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15218944..15219802 543..1401 4295 100 Plus
chrX 22417052 chrX 15220268..15220883 1679..2291 2985 99.4 Plus
chrX 22417052 chrX 15218282..15218606 1..325 1625 100 Plus
chrX 22417052 chrX 15218670..15218887 326..543 1090 100 Plus
chrX 22417052 chrX 15220046..15220205 1519..1678 800 100 Plus
chrX 22417052 chrX 15219866..15219983 1401..1518 590 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15329010..15329868 543..1401 4295 100 Plus
X 23542271 X 15330334..15330947 1679..2292 3070 100 Plus
X 23542271 X 15328348..15328672 1..325 1625 100 Plus
X 23542271 X 15328736..15328953 326..543 1090 100 Plus
X 23542271 X 15330112..15330271 1519..1678 800 100 Plus
X 23542271 X 15329932..15330049 1401..1518 590 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15337108..15337966 543..1401 4295 100 Plus
X 23527363 X 15338432..15339045 1679..2292 3070 100 Plus
X 23527363 X 15336446..15336770 1..325 1625 100 Plus
X 23527363 X 15336834..15337051 326..543 1090 100 Plus
X 23527363 X 15338210..15338369 1519..1678 800 100 Plus
X 23527363 X 15338030..15338147 1401..1518 590 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:13:07 has no hits.

LD05408.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:14:10 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15220046..15220205 1519..1678 100 -> Plus
chrX 15218282..15218606 1..325 100 -> Plus
chrX 15218670..15218886 326..542 100 -> Plus
chrX 15218944..15219801 543..1400 100 -> Plus
chrX 15219866..15219983 1401..1518 100 -> Plus
chrX 15220268..15220883 1679..2291 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:36:56 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 1..1950 97..2046 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:36 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 1..1950 97..2046 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:27 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 1..1950 97..2046 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:28 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 1..1950 97..2046 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:20 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 1..1950 97..2046 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:01 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 3..2293 1..2291 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:36 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 3..2293 1..2291 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:27 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 7..2297 1..2291 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:28 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 3..2293 1..2291 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:20 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
dah-RA 7..2297 1..2291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:10 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
X 15328736..15328952 326..542 100 -> Plus
X 15328348..15328672 1..325 100 -> Plus
X 15329010..15329867 543..1400 100 -> Plus
X 15329932..15330049 1401..1518 100 -> Plus
X 15330112..15330271 1519..1678 100 -> Plus
X 15330334..15330946 1679..2291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:10 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
X 15328736..15328952 326..542 100 -> Plus
X 15328348..15328672 1..325 100 -> Plus
X 15329010..15329867 543..1400 100 -> Plus
X 15329932..15330049 1401..1518 100 -> Plus
X 15330112..15330271 1519..1678 100 -> Plus
X 15330334..15330946 1679..2291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:10 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
X 15328736..15328952 326..542 100 -> Plus
X 15328348..15328672 1..325 100 -> Plus
X 15329010..15329867 543..1400 100 -> Plus
X 15329932..15330049 1401..1518 100 -> Plus
X 15330112..15330271 1519..1678 100 -> Plus
X 15330334..15330946 1679..2291 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:27 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15222381..15222705 1..325 100 -> Plus
arm_X 15222769..15222985 326..542 100 -> Plus
arm_X 15223043..15223900 543..1400 100 -> Plus
arm_X 15223965..15224082 1401..1518 100 -> Plus
arm_X 15224145..15224304 1519..1678 100 -> Plus
arm_X 15224367..15224979 1679..2291 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:19 Download gff for LD05408.complete
Subject Subject Range Query Range Percent Splice Strand
X 15338030..15338147 1401..1518 100 -> Plus
X 15338210..15338369 1519..1678 100 -> Plus
X 15336446..15336770 1..325 100 -> Plus
X 15336834..15337050 326..542 100 -> Plus
X 15337108..15337965 543..1400 100 -> Plus
X 15338432..15339044 1679..2291 100   Plus

LD05408.pep Sequence

Translation from 96 to 2045

> LD05408.pep
MLRSSVPVQLTKLRNSAEAVASIAREKGSQGGQGQKQQVDKELSTIMDDL
QRDYGNYKYTVYRCASKFVALQKIFHTGKIPYKLVLAILDRHNLSGGLEL
MVPPFQLTSLLHDVYFACEKLGHFNQDANYKLDRATGLLANFFWNVYDPQ
RRHSISLLEIRITFILLCKLYSSDHLVGDIFGLLADPKSQIISRYAFEQL
LATLSKLLSYLGEAKAYGVHNLPLAMEQCFARCPHGVGGLTEPQFHKLWT
GAGVQTRFLIYGNLLALVKRIEDTEHLIHSNSCAGCRKEHIVGIRFRCQV
CRDISLCLPCFAVGFAGGRHEPGHRMCEVFVEDQPPLRWTRHLARLCGWL
VMPRKTQEEERRGFCNAQESGPALGQSAATPIPAETRSVRSQCQEKDRTV
VLQQQQQELCSLTGLASEASSRLQSIIDRLLLQNAKLETQLQTVATASSS
EISQFLSAHQCFLLQIIEDMRQLSHASAVTSPPPAPAAQVAPSAAPLVSS
TFLSSSTPQRQMLFDMYAPVGANLTHSINGADLNRSYLEANKSDYSLNDI
SLWFDQRRSSVQPGQGPGSLPAPLPLPMPLGALLEQQPANGGDGRDTEMV
NFKLLLHKVKEIVEDSYSDNAELSAATQNLENVLDSIIKSEEQQRRIST*

LD05408.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21234-PA 657 GF21234-PA 2..657 5..649 2700 78.2 Plus
Dana\GF16554-PA 3497 GF16554-PA 2891..3157 53..328 236 26.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17875-PA 645 GG17875-PA 1..645 1..649 3138 94.5 Plus
Dere\GG23350-PA 1694 GG23350-PA 1089..1373 53..343 237 25.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24488-PA 689 GH24488-PA 1..668 1..644 2169 68.7 Plus
Dgri\GH22298-PA 1700 GH22298-PA 1098..1382 53..343 233 25.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
dah-PA 649 CG6157-PA 1..649 1..649 3357 100 Plus
dah-PB 646 CG6157-PB 1..646 1..649 3328 99.5 Plus
Dys-PE 1051 CG34157-PE 445..729 53..343 218 25.9 Plus
Dys-PJ 1152 CG34157-PJ 445..729 53..343 218 25.9 Plus
Dys-PL 1323 CG34157-PL 717..1001 53..343 218 25.9 Plus
Dys-PB 1669 CG34157-PB 1063..1347 53..343 218 25.9 Plus
Dys-PD 1854 CG34157-PD 1248..1532 53..343 218 25.9 Plus
Dys-PC 3127 CG34157-PC 2521..2805 53..343 218 25.9 Plus
Dys-PK 3144 CG34157-PK 2538..2822 53..343 218 25.9 Plus
Dys-PI 3228 CG34157-PI 2570..2854 53..343 218 25.9 Plus
Dys-PA 3497 CG34157-PA 2891..3175 53..343 218 25.9 Plus
Dys-PG 3504 CG34157-PG 2898..3182 53..343 218 25.9 Plus
Dys-PF 3529 CG34157-PF 2923..3207 53..343 218 25.9 Plus
Dys-PH 3598 CG34157-PH 2891..3175 53..343 218 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10895-PA 686 GI10895-PA 1..669 1..644 2215 66.4 Plus
Dmoj\GI23105-PA 1666 GI23105-PA 1062..1346 53..343 240 26.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14572-PA 649 GL14572-PA 1..649 13..649 2413 72.9 Plus
Dper\GL12656-PA 888 GL12656-PA 175..459 53..343 232 26.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19399-PA 649 GA19399-PA 1..649 13..649 2420 73 Plus
Dpse\GA30238-PB 1651 GA30238-PB 1086..1370 53..343 237 26.2 Plus
Dpse\GA30238-PC 1852 GA30238-PC 1287..1571 53..343 237 26.2 Plus
Dpse\GA30238-PA 3413 GA30238-PA 2848..3132 53..343 236 26.2 Plus
Dpse\GA30238-PD 1027 GA30238-PD 462..746 53..343 233 26.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19870-PA 649 GM19870-PA 1..649 1..649 3458 99.2 Plus
Dsec\GM26846-PA 781 GM26846-PA 175..459 53..343 229 25.6 Plus
Dsec\GM21392-PA 836 GM21392-PA 7..288 34..328 163 24.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17206-PA 649 GD17206-PA 1..649 1..649 3459 99.5 Plus
Dsim\GD19295-PA 781 GD19295-PA 175..459 53..343 229 25.6 Plus
Dsim\GD10888-PA 741 GD10888-PA 7..288 34..328 164 24.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16570-PA 657 GJ16570-PA 1..641 1..643 2263 69.7 Plus
Dvir\GJ22727-PA 1664 GJ22727-PA 1060..1344 53..343 238 26.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20020-PA 645 GK20020-PA 27..642 43..646 2095 65.4 Plus
Dwil\GK13817-PA 1700 GK13817-PA 1071..1355 53..343 233 25.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17179-PA 645 GE17179-PA 1..645 1..649 3243 95.4 Plus
Dyak\GE25609-PA 1800 GE25609-PA 1196..1480 53..343 236 25.9 Plus

LD05408.hyp Sequence

Translation from 96 to 2045

> LD05408.hyp
MLRSSVPVQLTKLRNSAEAVASIAREKGSQGGQGQKQQVDKELSTIMDDL
QRDYGNYKYTVYRCASKFVALQKIFHTGKIPYKLVLAILDRHNLSGGLEL
MVPPFQLTSLLHDVYFACEKLGHFNQDANYKLDRATGLLANFFWNVYDPQ
RRHSISLLEIRITFILLCKLYSSDHLVGDIFGLLADPKSQIISRYAFEQL
LATLSKLLSYLGEAKAYGVHNLPLAMEQCFARCPHGVGGLTEPQFHKLWT
GAGVQTRFLIYGNLLALVKRIEDTEHLIHSNSCAGCRKEHIVGIRFRCQV
CRDISLCLPCFAVGFAGGRHEPGHRMCEVFVEDQPPLRWTRHLARLCGWL
VMPRKTQEEERRGFCNAQESGPALGQSAATPIPAETRSVRSQCQEKDRTV
VLQQQQQELCSLTGLASEASSRLQSIIDRLLLQNAKLETQLQTVATASSS
EISQFLSAHQCFLLQIIEDMRQLSHASAVTSPPPAPAAQVAPSAAPLVSS
TFLSSSTPQRQMLFDMYAPVGANLTHSINGADLNRSYLEANKSDYSLNDI
SLWFDQRRSSVQPGQGPGSLPAPLPLPMPLGALLEQQPANGGDGRDTEMV
NFKLLLHKVKEIVEDSYSDNAELSAATQNLENVLDSIIKSEEQQRRIST*

LD05408.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
dah-PA 649 CG6157-PA 1..649 1..649 3357 100 Plus
dah-PB 646 CG6157-PB 1..646 1..649 3328 99.5 Plus
Dys-PE 1051 CG34157-PE 445..729 53..343 218 25.9 Plus
Dys-PJ 1152 CG34157-PJ 445..729 53..343 218 25.9 Plus
Dys-PL 1323 CG34157-PL 717..1001 53..343 218 25.9 Plus