Clone LD05472 Report

Search the DGRC for LD05472

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:54
Well:72
Vector:pBS SK-
Associated Gene/TranscriptOptix-RA
Protein status:LD05472.pep: gold
Preliminary Size:2421
Sequenced Size:2337

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18455 2001-10-10 Blastp of sequenced clone
Optix 2008-04-29 Release 5.5 accounting
Optix 2008-08-15 Release 5.9 accounting
Optix 2008-12-18 5.12 accounting

Clone Sequence Records

LD05472.complete Sequence

2337 bp (2337 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061077

> LD05472.complete
CATGAGCTGGCTCATTGGCAATCATTTGGATTCGTACGCCAGTCGAACCG
GTGGCCACCTCACACATCCAGACGGCCAGATGCCCTCGATCGCGCGTGCA
AAGTGCTAACCCCAAACCAATCAGTAAAACCTTATCGAGGCGGACTGAAT
CGAGTCGGATCAAGCCACCCAAGTGCTAGTGAACACATCAAAAAAAAAAA
AAAAAAAAACGAATAACAGCCAAGGAATTGAATTAGTGACTAAACCAGTG
TAGTGCCCAGCAAGATTGCTTCGTTCCGGTGGAGAATAGTATGCCAATTT
GTTCACAGTGGATTCAACGAATAAAATGGCCGTTGGACCGACGGAGGGCA
AACAGCCGCCCTCAGAGAGCTTCTCGCCCACGCACCACCAGATTATAGCA
CCCAGCCCCATCCTGGCCGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGT
GGAGATCGTTTGCAAGACGCTCGAGGACTCCGGCGACATCGAGCGGTTGG
CCCGCTTCCTCTGGAGCCTGCCGGTGGCCCTGCCCAACATGCACGAGATC
CTCAACTGCGAGGCGGTGCTCCGTGCCCGCGCAGTGGTCGCCTACCATGT
GGGCAACTTCAGGGAACTTTATGCAATAATAGAGAATCATAAGTTTACTA
AGGCGTCCTACGGCAAACTGCAGGCCATGTGGCTGGAGGCCCACTACATT
GAGGCCGAGAAGCTGCGCGGTCGATCACTGGGCCCCGTGGACAAGTATCG
GGTGCGAAAGAAGTTCCCCCTGCCGCCGACGATCTGGGATGGCGAGCAGA
AGACGCACTGCTTCAAGGAGCGCACGCGGAGCCTACTGCGCGAATGGTAC
CTACAGGATCCCTACCCGAATCCCACCAAGAAGCGGGAGCTGGCCAAGGC
CACCGGCCTGAATCCCACGCAAGTGGGCAACTGGTTCAAGAACCGCCGCC
AGCGGGATCGGGCTGCTGCGGCCAAGAATCGCATCCAGCATAGCCAGAAC
AGCTCGGGAATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACC
AACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGC
CGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAAC
GGCGCCAACGACCGCGAGGAGAGCTTGAGCGTGGACGACGACAAGCCGCG
GGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTGCCGCTGG
CCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGGGGGCGGG
GCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTCTGCCACC
CTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGTTACCTGC
AGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCATCCAGCCG
ATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCACTGAACGG
CGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCTGCCTACA
GTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCCGCCGAAG
CTGAGGATCAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGGCGGCGGC
AGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCCACCACGA
CCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTTCTCCACG
TCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACATGATATCAGCGGGT
CTGAGGTGTCCACCTGTAACCCCACCCAGACTAAATCAACAACCCCAAAC
CGAAATCCCAAATCCCAATCCTCACAAGCTCCGAAGCACTAAGGCCCAGC
TATTCAGATTGTTTCAATTGTATTTCTAAGTTAGCCCGTAGTTAAGCGCA
TCCCAGCGGCGGAGTTCGAGCAATATTCGAACCGGAACTGTTTCCTATAT
CATGGCCCATAATTACCATACCTTTACCTATACCTATACCTATACCGTTA
TCCAGCAGCAGCAAATCGCAAGCGTCGCACACTCACTCTTCAAAGATAGC
CATTTAAGCCGGATGGAAACTGAGATACAGATTTAGAGCTAATACAGATG
GCGGTCCCAGTGGCCCCAAAACTGAAATTGAATTCGAGACGTTTTCATTC
TAATTTTGTGTGTGTGTACGTATTTGTAAATAGAGTTTAAGTATGCAAAT
CATAGAGCTTACGTATACAATTAGATTGCAATAAAACCGAATGAACAGTT
AAGAATTTGAATCATTATAAAAAAAAAAAAAAAAAAA

LD05472.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
Optix.a 2742 Optix.a 386..2710 1..2325 11610 99.9 Plus
Optix-RA 2357 Optix-RA 1..2325 1..2325 11610 99.9 Plus
Optix-RB 1477 Optix-RB 133..1477 981..2325 6710 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3928598..3929935 981..2318 6585 99.5 Plus
chr2R 21145070 chr2R 3919042..3919654 1..613 3065 100 Plus
chr2R 21145070 chr2R 3921703..3921953 731..981 1255 100 Plus
chr2R 21145070 chr2R 3920713..3920837 608..732 625 100 Plus
chr3L 24539361 chr3L 20779313..20779446 820..687 340 83.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:51:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041192..8042536 981..2325 6710 99.9 Plus
2R 25286936 2R 8031633..8032245 1..613 3065 100 Plus
2R 25286936 2R 8034290..8034540 731..981 1255 100 Plus
2R 25286936 2R 8033300..8033424 608..732 625 100 Plus
3L 28110227 3L 20790294..20790427 820..687 340 83.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8042391..8043735 981..2325 6710 99.9 Plus
2R 25260384 2R 8032832..8033444 1..613 3065 100 Plus
2R 25260384 2R 8035489..8035739 731..981 1255 100 Plus
2R 25260384 2R 8034499..8034623 608..732 625 100 Plus
3L 28103327 3L 20783394..20783527 820..687 340 83.5 Minus
Blast to na_te.dros performed on 2019-03-15 22:11:30 has no hits.

LD05472.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:12:18 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3919042..3919653 1..612 96 -> Plus
chr2R 3920718..3920836 613..731 100 -> Plus
chr2R 3921704..3921953 732..981 100 -> Plus
chr2R 3928599..3929935 982..2318 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:31:16 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1..1464 326..1789 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:04 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1..1464 326..1789 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:11:30 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RC 1..1479 326..1804 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:01 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1..1464 326..1789 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:14:40 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RC 1..1479 326..1804 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:31:16 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1..2318 1..2318 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:04 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1..2318 1..2318 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:11:30 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 41..2358 1..2318 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:01 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1..2318 1..2318 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:40 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 41..2358 1..2318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:18 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8031633..8032244 1..612 100 -> Plus
2R 8033305..8033423 613..731 100 -> Plus
2R 8034291..8034540 732..981 100 -> Plus
2R 8041193..8042529 982..2318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:18 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8031633..8032244 1..612 100 -> Plus
2R 8033305..8033423 613..731 100 -> Plus
2R 8034291..8034540 732..981 100 -> Plus
2R 8041193..8042529 982..2318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:18 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8031633..8032244 1..612 100 -> Plus
2R 8033305..8033423 613..731 100 -> Plus
2R 8034291..8034540 732..981 100 -> Plus
2R 8041193..8042529 982..2318 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:11:30 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3919138..3919749 1..612 100 -> Plus
arm_2R 3920810..3920928 613..731 100 -> Plus
arm_2R 3921796..3922045 732..981 100 -> Plus
arm_2R 3928698..3930034 982..2318 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:11 Download gff for LD05472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8035490..8035739 732..981 100 -> Plus
2R 8032832..8033443 1..612 100 -> Plus
2R 8034504..8034622 613..731 100 -> Plus
2R 8042392..8043728 982..2318 100   Plus

LD05472.pep Sequence

Translation from 325 to 1788

> LD05472.pep
MAVGPTEGKQPPSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLE
DSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYA
IIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLP
PTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQV
GNWFKNRRQRDRAAAAKNRIQHSQNSSGMGCRSRRADGAASPTPSDSSDS
DISLGTHSPVPSSLQLQHSPGSTSNGANDREESLSVDDDKPRDLSGSLPL
PLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTGPGCLPPFKLDAATS
LFSAGCYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLALNGASGGPPLH
HPAYAAAYSVECVPGGHGPPHPPPKLRINSPEKLNSTAVAAAASVGGGGG
NQHHEPTTTGYHHSGQLMLHRPFSTSPELKHSAPEIT*

LD05472.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13656-PA 489 GF13656-PA 1..489 1..487 2022 91.3 Plus
Dana\GF12955-PA 419 GF12955-PA 98..280 32..218 637 58.8 Plus
Dana\GF24111-PA 392 GF24111-PA 169..353 24..213 544 54.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23326-PA 490 GG23326-PA 1..490 1..487 2502 97.1 Plus
Dere\GG23277-PA 422 GG23277-PA 103..285 32..218 637 58.8 Plus
Dere\GG13283-PA 392 GG13283-PA 164..353 21..213 546 53.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21899-PA 474 GH21899-PA 1..474 1..487 1898 85.6 Plus
Dgri\GH21164-PA 466 GH21164-PA 115..297 32..218 637 58.8 Plus
Dgri\GH14784-PA 390 GH14784-PA 169..353 24..213 547 53.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-PC 492 CG18455-PC 1..487 1..487 2607 100 Plus
Optix-PA 487 CG18455-PA 1..487 1..487 2607 100 Plus
Optix-PB 259 CG18455-PB 1..259 229..487 1397 100 Plus
so-PA 416 CG11121-PA 98..393 32..350 633 43 Plus
Six4-PB 392 CG3871-PB 159..352 15..212 516 51.5 Plus
Six4-PA 392 CG3871-PA 159..352 15..212 516 51.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19347-PA 501 GI19347-PA 1..501 1..487 1844 79.6 Plus
Dmoj\GI18759-PA 454 GI18759-PA 113..296 31..218 644 59 Plus
Dmoj\GI11887-PA 400 GI11887-PA 179..370 24..220 552 52.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11483-PA 493 GL11483-PA 1..493 1..487 1762 79.2 Plus
Dper\GL11165-PA 430 GL11165-PA 107..289 32..218 639 58.8 Plus
Dper\GL12751-PA 392 GL12751-PA 179..360 35..220 532 53.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14941-PA 492 GA14941-PA 1..492 1..487 1923 87.9 Plus
Dpse\GA10770-PA 425 GA10770-PA 105..403 32..350 581 43.6 Plus
Dpse\GA17741-PA 395 GA17741-PA 182..363 35..220 545 54.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21001-PA 487 GM21001-PA 1..487 1..487 2556 99.6 Plus
Dsec\GM20951-PA 414 GM20951-PA 94..276 32..218 640 58.8 Plus
Dsec\GM22186-PA 383 GM22186-PA 164..344 21..213 507 51.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10533-PA 292 GD10533-PA 1..219 1..219 1128 100 Plus
Dsim\GD10534-PA 199 GD10534-PA 50..199 338..487 599 96 Plus
Dsim\GD12161-PA 392 GD12161-PA 164..353 21..213 545 53.1 Plus
Dsim\GD10477-PA 129 GD10477-PA 33..128 122..217 387 70.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22125-PA 481 GJ22125-PA 1..481 1..487 1940 86.2 Plus
Dvir\GJ21783-PA 439 GJ21783-PA 110..292 32..218 635 58.8 Plus
Dvir\GJ13766-PA 391 GJ13766-PA 180..354 35..213 554 55.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23166-PA 490 GK23166-PA 1..490 1..487 1900 81.4 Plus
Dwil\GK21318-PA 443 GK21318-PA 119..301 32..218 642 58.8 Plus
Dwil\GK12359-PA 414 GK12359-PA 200..374 35..213 546 55.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19170-PA 492 GE19170-PA 1..492 1..487 2489 97.4 Plus
Dyak\GE19124-PA 417 GE19124-PA 101..283 32..218 638 58.8 Plus
Dyak\GE22732-PA 392 GE22732-PA 164..353 21..213 546 53.1 Plus
Dyak\GE22381-PA 392 GE22381-PA 164..353 21..213 546 53.1 Plus

LD05472.hyp Sequence

Translation from 325 to 1788

> LD05472.hyp
MAVGPTEGKQPPSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLE
DSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYA
IIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLP
PTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQV
GNWFKNRRQRDRAAAAKNRIQHSQNSSGMGCRSRRADGAASPTPSDSSDS
DISLGTHSPVPSSLQLQHSPGSTSNGANDREESLSVDDDKPRDLSGSLPL
PLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTGPGCLPPFKLDAATS
LFSAGCYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLALNGASGGPPLH
HPAYAAAYSVECVPGGHGPPHPPPKLRINSPEKLNSTAVAAAASVGGGGG
NQHHEPTTTGYHHSGQLMLHRPFSTSPELKHSAPEIT*

LD05472.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-PC 492 CG18455-PC 1..487 1..487 2607 100 Plus
Optix-PA 487 CG18455-PA 1..487 1..487 2607 100 Plus
Optix-PB 259 CG18455-PB 1..259 229..487 1397 100 Plus
so-PA 416 CG11121-PA 98..393 32..350 633 43 Plus
Six4-PB 392 CG3871-PB 159..352 15..212 516 51.5 Plus