BDGP Sequence Production Resources |
Search the DGRC for LD05472
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 54 |
Well: | 72 |
Vector: | pBS SK- |
Associated Gene/Transcript | Optix-RA |
Protein status: | LD05472.pep: gold |
Preliminary Size: | 2421 |
Sequenced Size: | 2337 |
Gene | Date | Evidence |
---|---|---|
CG18455 | 2001-10-10 | Blastp of sequenced clone |
Optix | 2008-04-29 | Release 5.5 accounting |
Optix | 2008-08-15 | Release 5.9 accounting |
Optix | 2008-12-18 | 5.12 accounting |
2337 bp (2337 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061077
> LD05472.complete CATGAGCTGGCTCATTGGCAATCATTTGGATTCGTACGCCAGTCGAACCG GTGGCCACCTCACACATCCAGACGGCCAGATGCCCTCGATCGCGCGTGCA AAGTGCTAACCCCAAACCAATCAGTAAAACCTTATCGAGGCGGACTGAAT CGAGTCGGATCAAGCCACCCAAGTGCTAGTGAACACATCAAAAAAAAAAA AAAAAAAAACGAATAACAGCCAAGGAATTGAATTAGTGACTAAACCAGTG TAGTGCCCAGCAAGATTGCTTCGTTCCGGTGGAGAATAGTATGCCAATTT GTTCACAGTGGATTCAACGAATAAAATGGCCGTTGGACCGACGGAGGGCA AACAGCCGCCCTCAGAGAGCTTCTCGCCCACGCACCACCAGATTATAGCA CCCAGCCCCATCCTGGCCGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGT GGAGATCGTTTGCAAGACGCTCGAGGACTCCGGCGACATCGAGCGGTTGG CCCGCTTCCTCTGGAGCCTGCCGGTGGCCCTGCCCAACATGCACGAGATC CTCAACTGCGAGGCGGTGCTCCGTGCCCGCGCAGTGGTCGCCTACCATGT GGGCAACTTCAGGGAACTTTATGCAATAATAGAGAATCATAAGTTTACTA AGGCGTCCTACGGCAAACTGCAGGCCATGTGGCTGGAGGCCCACTACATT GAGGCCGAGAAGCTGCGCGGTCGATCACTGGGCCCCGTGGACAAGTATCG GGTGCGAAAGAAGTTCCCCCTGCCGCCGACGATCTGGGATGGCGAGCAGA AGACGCACTGCTTCAAGGAGCGCACGCGGAGCCTACTGCGCGAATGGTAC CTACAGGATCCCTACCCGAATCCCACCAAGAAGCGGGAGCTGGCCAAGGC CACCGGCCTGAATCCCACGCAAGTGGGCAACTGGTTCAAGAACCGCCGCC AGCGGGATCGGGCTGCTGCGGCCAAGAATCGCATCCAGCATAGCCAGAAC AGCTCGGGAATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACC AACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGC CGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAAC GGCGCCAACGACCGCGAGGAGAGCTTGAGCGTGGACGACGACAAGCCGCG GGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTGCCGCTGG CCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGGGGGCGGG GCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTCTGCCACC CTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGTTACCTGC AGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCATCCAGCCG ATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCACTGAACGG CGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCTGCCTACA GTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCCGCCGAAG CTGAGGATCAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGGCGGCGGC AGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCCACCACGA CCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTTCTCCACG TCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACATGATATCAGCGGGT CTGAGGTGTCCACCTGTAACCCCACCCAGACTAAATCAACAACCCCAAAC CGAAATCCCAAATCCCAATCCTCACAAGCTCCGAAGCACTAAGGCCCAGC TATTCAGATTGTTTCAATTGTATTTCTAAGTTAGCCCGTAGTTAAGCGCA TCCCAGCGGCGGAGTTCGAGCAATATTCGAACCGGAACTGTTTCCTATAT CATGGCCCATAATTACCATACCTTTACCTATACCTATACCTATACCGTTA TCCAGCAGCAGCAAATCGCAAGCGTCGCACACTCACTCTTCAAAGATAGC CATTTAAGCCGGATGGAAACTGAGATACAGATTTAGAGCTAATACAGATG GCGGTCCCAGTGGCCCCAAAACTGAAATTGAATTCGAGACGTTTTCATTC TAATTTTGTGTGTGTGTACGTATTTGTAAATAGAGTTTAAGTATGCAAAT CATAGAGCTTACGTATACAATTAGATTGCAATAAAACCGAATGAACAGTT AAGAATTTGAATCATTATAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3928598..3929935 | 981..2318 | 6585 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 3919042..3919654 | 1..613 | 3065 | 100 | Plus |
chr2R | 21145070 | chr2R | 3921703..3921953 | 731..981 | 1255 | 100 | Plus |
chr2R | 21145070 | chr2R | 3920713..3920837 | 608..732 | 625 | 100 | Plus |
chr3L | 24539361 | chr3L | 20779313..20779446 | 820..687 | 340 | 83.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 8041192..8042536 | 981..2325 | 6710 | 99.9 | Plus |
2R | 25286936 | 2R | 8031633..8032245 | 1..613 | 3065 | 100 | Plus |
2R | 25286936 | 2R | 8034290..8034540 | 731..981 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 8033300..8033424 | 608..732 | 625 | 100 | Plus |
3L | 28110227 | 3L | 20790294..20790427 | 820..687 | 340 | 83.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 8042391..8043735 | 981..2325 | 6710 | 99.9 | Plus |
2R | 25260384 | 2R | 8032832..8033444 | 1..613 | 3065 | 100 | Plus |
2R | 25260384 | 2R | 8035489..8035739 | 731..981 | 1255 | 100 | Plus |
2R | 25260384 | 2R | 8034499..8034623 | 608..732 | 625 | 100 | Plus |
3L | 28103327 | 3L | 20783394..20783527 | 820..687 | 340 | 83.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3919042..3919653 | 1..612 | 96 | -> | Plus |
chr2R | 3920718..3920836 | 613..731 | 100 | -> | Plus |
chr2R | 3921704..3921953 | 732..981 | 100 | -> | Plus |
chr2R | 3928599..3929935 | 982..2318 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RA | 1..1464 | 326..1789 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RA | 1..1464 | 326..1789 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RC | 1..1479 | 326..1804 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RA | 1..1464 | 326..1789 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RC | 1..1479 | 326..1804 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RA | 1..2318 | 1..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RA | 1..2318 | 1..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RA | 41..2358 | 1..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RA | 1..2318 | 1..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Optix-RA | 41..2358 | 1..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8031633..8032244 | 1..612 | 100 | -> | Plus |
2R | 8033305..8033423 | 613..731 | 100 | -> | Plus |
2R | 8034291..8034540 | 732..981 | 100 | -> | Plus |
2R | 8041193..8042529 | 982..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8031633..8032244 | 1..612 | 100 | -> | Plus |
2R | 8033305..8033423 | 613..731 | 100 | -> | Plus |
2R | 8034291..8034540 | 732..981 | 100 | -> | Plus |
2R | 8041193..8042529 | 982..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8031633..8032244 | 1..612 | 100 | -> | Plus |
2R | 8033305..8033423 | 613..731 | 100 | -> | Plus |
2R | 8034291..8034540 | 732..981 | 100 | -> | Plus |
2R | 8041193..8042529 | 982..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3919138..3919749 | 1..612 | 100 | -> | Plus |
arm_2R | 3920810..3920928 | 613..731 | 100 | -> | Plus |
arm_2R | 3921796..3922045 | 732..981 | 100 | -> | Plus |
arm_2R | 3928698..3930034 | 982..2318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8035490..8035739 | 732..981 | 100 | -> | Plus |
2R | 8032832..8033443 | 1..612 | 100 | -> | Plus |
2R | 8034504..8034622 | 613..731 | 100 | -> | Plus |
2R | 8042392..8043728 | 982..2318 | 100 | Plus |
Translation from 325 to 1788
> LD05472.pep MAVGPTEGKQPPSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLE DSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYA IIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLP PTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQV GNWFKNRRQRDRAAAAKNRIQHSQNSSGMGCRSRRADGAASPTPSDSSDS DISLGTHSPVPSSLQLQHSPGSTSNGANDREESLSVDDDKPRDLSGSLPL PLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTGPGCLPPFKLDAATS LFSAGCYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLALNGASGGPPLH HPAYAAAYSVECVPGGHGPPHPPPKLRINSPEKLNSTAVAAAASVGGGGG NQHHEPTTTGYHHSGQLMLHRPFSTSPELKHSAPEIT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13656-PA | 489 | GF13656-PA | 1..489 | 1..487 | 2022 | 91.3 | Plus |
Dana\GF12955-PA | 419 | GF12955-PA | 98..280 | 32..218 | 637 | 58.8 | Plus |
Dana\GF24111-PA | 392 | GF24111-PA | 169..353 | 24..213 | 544 | 54.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23326-PA | 490 | GG23326-PA | 1..490 | 1..487 | 2502 | 97.1 | Plus |
Dere\GG23277-PA | 422 | GG23277-PA | 103..285 | 32..218 | 637 | 58.8 | Plus |
Dere\GG13283-PA | 392 | GG13283-PA | 164..353 | 21..213 | 546 | 53.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21899-PA | 474 | GH21899-PA | 1..474 | 1..487 | 1898 | 85.6 | Plus |
Dgri\GH21164-PA | 466 | GH21164-PA | 115..297 | 32..218 | 637 | 58.8 | Plus |
Dgri\GH14784-PA | 390 | GH14784-PA | 169..353 | 24..213 | 547 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Optix-PC | 492 | CG18455-PC | 1..487 | 1..487 | 2607 | 100 | Plus |
Optix-PA | 487 | CG18455-PA | 1..487 | 1..487 | 2607 | 100 | Plus |
Optix-PB | 259 | CG18455-PB | 1..259 | 229..487 | 1397 | 100 | Plus |
so-PA | 416 | CG11121-PA | 98..393 | 32..350 | 633 | 43 | Plus |
Six4-PB | 392 | CG3871-PB | 159..352 | 15..212 | 516 | 51.5 | Plus |
Six4-PA | 392 | CG3871-PA | 159..352 | 15..212 | 516 | 51.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19347-PA | 501 | GI19347-PA | 1..501 | 1..487 | 1844 | 79.6 | Plus |
Dmoj\GI18759-PA | 454 | GI18759-PA | 113..296 | 31..218 | 644 | 59 | Plus |
Dmoj\GI11887-PA | 400 | GI11887-PA | 179..370 | 24..220 | 552 | 52.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11483-PA | 493 | GL11483-PA | 1..493 | 1..487 | 1762 | 79.2 | Plus |
Dper\GL11165-PA | 430 | GL11165-PA | 107..289 | 32..218 | 639 | 58.8 | Plus |
Dper\GL12751-PA | 392 | GL12751-PA | 179..360 | 35..220 | 532 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14941-PA | 492 | GA14941-PA | 1..492 | 1..487 | 1923 | 87.9 | Plus |
Dpse\GA10770-PA | 425 | GA10770-PA | 105..403 | 32..350 | 581 | 43.6 | Plus |
Dpse\GA17741-PA | 395 | GA17741-PA | 182..363 | 35..220 | 545 | 54.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21001-PA | 487 | GM21001-PA | 1..487 | 1..487 | 2556 | 99.6 | Plus |
Dsec\GM20951-PA | 414 | GM20951-PA | 94..276 | 32..218 | 640 | 58.8 | Plus |
Dsec\GM22186-PA | 383 | GM22186-PA | 164..344 | 21..213 | 507 | 51.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10533-PA | 292 | GD10533-PA | 1..219 | 1..219 | 1128 | 100 | Plus |
Dsim\GD10534-PA | 199 | GD10534-PA | 50..199 | 338..487 | 599 | 96 | Plus |
Dsim\GD12161-PA | 392 | GD12161-PA | 164..353 | 21..213 | 545 | 53.1 | Plus |
Dsim\GD10477-PA | 129 | GD10477-PA | 33..128 | 122..217 | 387 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22125-PA | 481 | GJ22125-PA | 1..481 | 1..487 | 1940 | 86.2 | Plus |
Dvir\GJ21783-PA | 439 | GJ21783-PA | 110..292 | 32..218 | 635 | 58.8 | Plus |
Dvir\GJ13766-PA | 391 | GJ13766-PA | 180..354 | 35..213 | 554 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23166-PA | 490 | GK23166-PA | 1..490 | 1..487 | 1900 | 81.4 | Plus |
Dwil\GK21318-PA | 443 | GK21318-PA | 119..301 | 32..218 | 642 | 58.8 | Plus |
Dwil\GK12359-PA | 414 | GK12359-PA | 200..374 | 35..213 | 546 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19170-PA | 492 | GE19170-PA | 1..492 | 1..487 | 2489 | 97.4 | Plus |
Dyak\GE19124-PA | 417 | GE19124-PA | 101..283 | 32..218 | 638 | 58.8 | Plus |
Dyak\GE22732-PA | 392 | GE22732-PA | 164..353 | 21..213 | 546 | 53.1 | Plus |
Dyak\GE22381-PA | 392 | GE22381-PA | 164..353 | 21..213 | 546 | 53.1 | Plus |
Translation from 325 to 1788
> LD05472.hyp MAVGPTEGKQPPSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLE DSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYA IIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLP PTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQV GNWFKNRRQRDRAAAAKNRIQHSQNSSGMGCRSRRADGAASPTPSDSSDS DISLGTHSPVPSSLQLQHSPGSTSNGANDREESLSVDDDKPRDLSGSLPL PLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTGPGCLPPFKLDAATS LFSAGCYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLALNGASGGPPLH HPAYAAAYSVECVPGGHGPPHPPPKLRINSPEKLNSTAVAAAASVGGGGG NQHHEPTTTGYHHSGQLMLHRPFSTSPELKHSAPEIT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Optix-PC | 492 | CG18455-PC | 1..487 | 1..487 | 2607 | 100 | Plus |
Optix-PA | 487 | CG18455-PA | 1..487 | 1..487 | 2607 | 100 | Plus |
Optix-PB | 259 | CG18455-PB | 1..259 | 229..487 | 1397 | 100 | Plus |
so-PA | 416 | CG11121-PA | 98..393 | 32..350 | 633 | 43 | Plus |
Six4-PB | 392 | CG3871-PB | 159..352 | 15..212 | 516 | 51.5 | Plus |