Clone LD05521 Report

Search the DGRC for LD05521

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:55
Well:21
Vector:pBS SK-
Associated Gene/TranscriptCG6693-RA
Protein status:LD05521.pep: gold
Preliminary Size:1498
Sequenced Size:1392

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6693 2001-01-01 Release 2 assignment
CG6693 2001-11-09 Blastp of sequenced clone
CG6693 2003-01-01 Sim4 clustering to Release 3
CG6693 2008-04-29 Release 5.5 accounting
CG6693 2008-08-15 Release 5.9 accounting
CG6693 2008-12-18 5.12 accounting

Clone Sequence Records

LD05521.complete Sequence

1392 bp (1392 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069345

> LD05521.complete
ATCACGCAGGCTCTCAAAAATTATCAATAGTTAAAACAAAATTCATAGAA
TACCATTTTACTTGTTAAATAATAACCAAATTGCTGTAAACAGGAAAATC
AAAGATTTTTTCGCACCATTAAACAAAGGAATTTTTGTCTGCCCCACGCA
CCGCCACACTGGCGCGGCGTTTTGGCGCATTTTGCGTTTGGTAGTGTTGG
TGCGAAAAATAAAAATACAAAATACGAAATTAGCAATGTCGACGCTGGAG
CTGTGCGAAAAGTATTTTGGGACGCGCGATGTGTACAAGCTAATGGAGCT
GGCCCGGGGCGCCGGCGAGAAGGAGGTGAAGAAGGCATACCACAAGCTCT
CGCTGCTCGTTCATCCCGATCGAGTGCCGGAGGAGCAGAAGGCGGAGTCC
ACCGAGAAGTTCAAGGTGCTATCGAAGCTCTACCAGGTGCTTACCGACAC
GCAGAAGCGGGCGCTGTACGACGAGCAGGGCGTGATCGACGACGACGATG
AGAGCGAGTCCAAGCTGTCGTCGTGGCTGGAGTTGTGGAGCAAAATCTTC
AAGCCCATCACCGAGGAGGATATCAACAACTATGAAAAGGAGTATGTGGA
ATCGGAGCTGGAGCGCACCGATCTGAAAAAGGCGTATCTGGGCGGCAAGG
GTTGCATCAACTATCTGATGAACCATGTGCCCTTCATGAAGGTGGAGGAC
GAGCCGCGCATTCAGAAGATCGTTCAGGATATGATTGCCAGCGGCGAGGT
GCCCGAGTACAAGATCTTTACCGAGGAGCCGGCAGCCAAGCGCAAGAAGC
GCCACCAGAAGTACGCGCGCGAATTCAAGGAGGCCAAGGTGATCAAGGAG
CGTTTGAAGCGCCGCCAGAAGGAGAAGGACGACCAGGATTTAGCCGACAA
CGGTGGCGATTTGCAGCAAATGATCCTGGCACGTCGCAATCAGCGCGAGT
CAAACTTTGGCTCCCTAATGGACCGCCTGATGGAGAAGTACGGCAACGAG
GACGACTCCGACACTGTTGACTTCAGCGCCTTCGAGAAGAAGAAAAAGAA
GTCCAAGAAGCCCGCCGCCAAGCAGGAGACCAAACCGAAGCTCAATGGAG
TCAAGGCGGGCCGTGTGGAGAAGGGCAAAAACTAGTGCCGTCCTCCACTG
CTCATCGTGCGCTCCTTAATATATATTTATCGTGTAGTTTAGGCTTAGTT
ACTCATATGTATTTATCCATGTACGTATACTTGTATTTTTCGCTAGATTA
ATACTAAGTGGACATAGAAATGCGCTACCATTATTACCCAAAAGTTTTCC
TTGGTTCGCAAGAAAATCAAATCAAATAAAAGAATACAACGTTATCACTG
CGAAATGCTGCTATTCTGATATAAAAAAAAAAAAAAAAAAAA

LD05521.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-RA 1379 CG6693-RA 1..1379 1..1379 6895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7045855..7047226 1372..1 6740 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11220261..11221639 1379..1 6895 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10961092..10962470 1379..1 6895 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:11:36 has no hits.

LD05521.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:12:21 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7045855..7047226 1..1372 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:07 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..900 236..1135 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:50 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..900 236..1135 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:11:37 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..900 236..1135 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:29 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..900 236..1135 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:14:47 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..900 236..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:00 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..1372 1..1372 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:50 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..1372 1..1372 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:11:37 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..1372 1..1372 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:29 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..1372 1..1372 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:47 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
CG6693-RA 1..1372 1..1372 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:21 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11220268..11221639 1..1372 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:21 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11220268..11221639 1..1372 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:12:21 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11220268..11221639 1..1372 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:11:37 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7045990..7047361 1..1372 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:53 Download gff for LD05521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10961099..10962470 1..1372 100   Minus

LD05521.pep Sequence

Translation from 235 to 1134

> LD05521.pep
MSTLELCEKYFGTRDVYKLMELARGAGEKEVKKAYHKLSLLVHPDRVPEE
QKAESTEKFKVLSKLYQVLTDTQKRALYDEQGVIDDDDESESKLSSWLEL
WSKIFKPITEEDINNYEKEYVESELERTDLKKAYLGGKGCINYLMNHVPF
MKVEDEPRIQKIVQDMIASGEVPEYKIFTEEPAAKRKKRHQKYAREFKEA
KVIKERLKRRQKEKDDQDLADNGGDLQQMILARRNQRESNFGSLMDRLME
KYGNEDDSDTVDFSAFEKKKKKSKKPAAKQETKPKLNGVKAGRVEKGKN*

LD05521.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18254-PA 297 GF18254-PA 1..297 1..296 1227 83.8 Plus
Dana\GF22004-PA 281 GF22004-PA 4..266 11..255 195 23.1 Plus
Dana\GF12761-PA 351 GF12761-PA 3..71 15..84 158 44.3 Plus
Dana\GF19555-PA 334 GF19555-PA 3..68 14..82 153 43.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17234-PA 196 GG17234-PA 1..195 1..195 948 91.3 Plus
Dere\GG17235-PA 79 GG17235-PA 1..79 221..299 315 93.7 Plus
Dere\GG22292-PA 353 GG22292-PA 3..71 15..84 157 44.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18109-PA 296 GH18109-PA 1..295 1..298 1121 73.6 Plus
Dgri\GH22993-PA 360 GH22993-PA 3..71 15..84 148 42.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-PB 299 CG6693-PB 1..299 1..299 1540 100 Plus
CG6693-PA 299 CG6693-PA 1..299 1..299 1540 100 Plus
mrj-PA 259 CG8448-PA 3..80 15..93 171 43 Plus
mrj-PC 259 CG8448-PC 3..80 15..93 171 43 Plus
mrj-PB 259 CG8448-PB 3..80 15..93 171 43 Plus
mrj-PD 259 CG8448-PD 3..80 15..93 171 43 Plus
mrj-PG 346 CG8448-PG 3..83 15..96 168 40.2 Plus
mrj-PH 346 CG8448-PH 3..83 15..96 168 40.2 Plus
mrj-PE 346 CG8448-PE 3..83 15..96 168 40.2 Plus
DnaJ-1-PA 334 CG10578-PA 3..68 14..82 150 40.6 Plus
DnaJ-1-PB 334 CG10578-PB 3..68 14..82 150 40.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24610-PA 299 GI24610-PA 1..296 1..296 1121 74 Plus
Dmoj\GI18961-PA 355 GI18961-PA 3..71 15..84 153 42.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12034-PA 299 GL12034-PA 1..299 1..299 1241 78.9 Plus
Dper\GL20051-PA 217 GL20051-PA 11..199 11..194 271 33.5 Plus
Dper\GL10681-PA 357 GL10681-PA 3..71 15..84 152 42.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19786-PA 299 GA19786-PA 1..299 1..299 1241 78.9 Plus
Dpse\GA24266-PA 217 GA24266-PA 11..199 11..194 271 33.5 Plus
Dpse\GA21086-PA 357 GA21086-PA 3..71 15..84 152 42.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26115-PA 299 GM26115-PA 1..299 1..299 1529 97.3 Plus
Dsec\GM20081-PA 344 GM20081-PA 3..71 15..84 156 44.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20675-PA 301 GD20675-PA 1..299 1..299 1532 97.7 Plus
Dsim\GD25559-PA 346 GD25559-PA 3..71 15..84 156 44.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22560-PA 295 GJ22560-PA 1..294 1..298 1126 73.2 Plus
Dvir\GJ21568-PA 352 GJ21568-PA 3..71 15..84 156 44.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12945-PA 295 GK12945-PA 1..294 1..298 1167 77.2 Plus
Dwil\GK21760-PA 279 GK21760-PA 1..269 1..255 232 28.3 Plus
Dwil\GK17894-PA 352 GK17894-PA 3..71 15..84 157 44.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24636-PA 299 GE24636-PA 1..299 1..299 1428 95 Plus
Dyak\GE14089-PA 351 GE14089-PA 3..71 15..84 157 44.3 Plus

LD05521.hyp Sequence

Translation from 235 to 1134

> LD05521.hyp
MSTLELCEKYFGTRDVYKLMELARGAGEKEVKKAYHKLSLLVHPDRVPEE
QKAESTEKFKVLSKLYQVLTDTQKRALYDEQGVIDDDDESESKLSSWLEL
WSKIFKPITEEDINNYEKEYVESELERTDLKKAYLGGKGCINYLMNHVPF
MKVEDEPRIQKIVQDMIASGEVPEYKIFTEEPAAKRKKRHQKYAREFKEA
KVIKERLKRRQKEKDDQDLADNGGDLQQMILARRNQRESNFGSLMDRLME
KYGNEDDSDTVDFSAFEKKKKKSKKPAAKQETKPKLNGVKAGRVEKGKN*

LD05521.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6693-PB 299 CG6693-PB 1..299 1..299 1540 100 Plus
CG6693-PA 299 CG6693-PA 1..299 1..299 1540 100 Plus
mrj-PA 259 CG8448-PA 3..80 15..93 171 43 Plus
mrj-PC 259 CG8448-PC 3..80 15..93 171 43 Plus
mrj-PB 259 CG8448-PB 3..80 15..93 171 43 Plus