Clone LD05535 Report

Search the DGRC for LD05535

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:55
Well:35
Vector:pBS SK-
Associated Gene/TranscriptCG15087-RA
Protein status:LD05535.pep: gold
Preliminary Size:2684
Sequenced Size:2390

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15087 2001-01-01 Release 2 assignment
CG15087 2002-05-20 Blastp of sequenced clone
CG15087 2003-01-01 Sim4 clustering to Release 3
CG15087 2008-04-29 Release 5.5 accounting
CG15087 2008-08-15 Release 5.9 accounting
CG15087 2008-12-18 5.12 accounting

Clone Sequence Records

LD05535.complete Sequence

2390 bp (2390 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118494

> LD05535.complete
TTTATTTATTTATTTAGACTAGTGGTAAAAAAAAGTTCTACAAAATGGCT
GAAACCAAAGCCAATCCCTTCGACATGGACAGCTCCAGCTTCGATGCGGA
AAAGTATCTGGAAAGGTTGCTCAAGGATTGCTCCTTAAAGCAAATAATGG
ATACGGAGGCGGCGGTGGTCAAGGACACACAGACATTGCACTCTGATATG
CAGACGCTGGTCTACGAGAATTACAACAAATTCATCTCCGCCACGGATAC
AATTCGCCGGATGAAAGATGACTTCAAGCAGATGGAAACGGATGTGAACC
TACTGATGACCAAGATGCAATCCATAACGACTTTTAGTGAGCAAATAACC
GGAACGCTGCAGGGCACCAGATCGCAACTATGTCGCCTGTCCGAGAAACA
CTCGCTCCTCAAAAGGCTGCAGTTTCTCTCAACTCTGCCAGCTAAACTGA
AGTCCCTCATCGAGGAACAGAACTACGCACAAGCTGTCCAGGACTACCTG
CATGCCCAGAAGGTGTTCGCCCAGTACGGTCGACAGCCGTCCTTCGATGG
AATCCAGCGAGATTGCGACGCCATCATGGCAGATCTCAAGGAGCAATTGC
GAAGTGACTTTCAAAGGGCTGGGAACACGGCCCAATCCTTGACGGAAATT
GGAGAGCTACTCCTGCAGCTGGACGAAAAGACTTCGGATCTGGCAAGCGA
AATGCTGACTTGCGCTGGCAAACGACTGCACGAGCAAATCGTCATGCTGC
AGGATCAAACAGAGCGTGATATGCTGGAGTTTGTGGACATGGGCATCGAT
GGTTTCCTCAACGATCTGGCACTGGTAGTGACTTCCTACTTTGACATGTT
TGTGGCCAAGCACTACGAGCATGAGCGCGATGACTTTCAGGAGAACGCCC
TGCAGGAGCTAAATGTCTTCCTCAATCAGAACATCGAAAAGTATCTGACA
CTCGTCCAGGATCGTGTTGAGTCCGACATTGGCTACGGCGATACCCAGGT
AATGCTACGCGCTCTGGATCGACTTCATCGGCGCCTTCAGGCCATGCGAA
ATATCTGCCGCGGCTTGGAGGTCCAACGCAACACAGTATCTATCATTATT
TCGGCTGCCCACCAACTATGCGATGCCCATGCCAAAAACCTCAAAGATCA
CTTTGCCGACAGTTTGAGTGCGGTTCGTCTGTCGCTGGTTTCTGCCAAGA
GCGATGCAGCTGCTGGTCTCAATCTCGGTGATCTGATAAGCAACCTTTAT
GTGTCCATGGTGGAGAAAATAAAGGGTGTACTGCAGGACTTGCTTATATT
CCTGCGCACCGACTGGTCGTTTAACATCAAGGCGGAACACAAGGGCGCCC
TGTGCGTAGAGGGCATTCGGGAGAACCTACTCATTGGCTTCCTACGTCAT
ATTGCCAAGGTGATGTGTGGTTTCGGAGATGCCTCCAGCTCCAGTCCACC
CAATCTACTGCTGGTGCTGTCGAAAACGTGTCTGGAACTCGAGCAACAGG
GCGTTCACATACTGATTGCTCTGGTTGATGACCTGTACGAAATCGACTCG
GAGAACAGTGCAACGCTTACCCACGAAACTGAGATATGTGCTGAAATGCG
GGAGACGGCACAGTCACTATTGGACGCCTATGTGCGGCTGCAGGGCACCA
ATATCTCGCAAATGTTACGCAAGAGCGTGGAAACAAGGGATTGGCTTAAC
TGCCTGGAACCACGATCCGTTCGTGCGGTGATGAAGCGTGTGGTGGAGGA
ACTCGGCAGCATCGAGACGGTGGTGGCCAGTCTGTACGAGGCAAACACTA
ATGCAACGTCAGGATTCCGCACCACAGCGAGCAGTGACTCTAGCCGAAAA
ACATATTTCAGTAACTTTGCTTCCACCTCAAAGCCACAGTATCGTTCCAA
TTGGTCAAACTACACGCCTTCGCAGCTGGAATCCAGCTATGTGTCCAACA
TACATCGCTTGTTTTCGGAGCGAGTGGAAATCTTTACTTCAGTAGAGTTC
ACCAAGGCCTCAATTATAATGGGAATTATTAAAATTGGTCTAAAAACCCT
TTTGGAATGCGTGAGGCTGAGAACTTTTAGCAAATTCGGACTTCAGCAGA
TTCAGGTGGATGCTCATTATCTGCAAATGAACCTATGGCGATTTGTAAGC
GATGAAAATCTGGTGAACTTCCTGCTGGACGAGATTCTTGGCTCAGCTGT
GCAAAGGTGCTTGGAGTCCGTTTTAATGGAGCCCAATGCTGTGGAAATTA
TTTGTGAACGGGGTTAGTATTTGTTTCCACAACATAAAGCAACATTCCAC
TTAAAATCTCCGTCTATTTTGTTAAACGCTGCTAGCTTAAGGATCTAAAA
ATAAACACCCTGTTTCTAATTTAAAAAAAAAAAAAAAAAA

LD05535.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15087-RA 2445 CG15087-RA 69..2441 1..2373 11865 100 Plus
CG15087.a 2399 CG15087.a 69..2334 1..2266 11315 99.9 Plus
CG15073.a 1974 CG15073.a 1887..1974 2373..2286 440 100 Minus
CG15087.a 2399 CG15087.a 2330..2368 2335..2373 195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14596997..14597751 877..123 3655 98.9 Minus
chr2R 21145070 chr2R 14596300..14596937 1514..877 3115 99.2 Minus
chr2R 21145070 chr2R 14595716..14596247 2045..1514 2615 99.4 Minus
chr2R 21145070 chr2R 14595281..14595494 2372..2159 1070 100 Minus
chr2R 21145070 chr2R 14597824..14597949 126..1 615 99.2 Minus
chr2R 21145070 chr2R 14595551..14595663 2158..2046 565 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18709867..18710621 877..123 3775 100 Minus
2R 25286936 2R 18709170..18709807 1514..877 3190 100 Minus
2R 25286936 2R 18708587..18709118 2045..1514 2660 100 Minus
2R 25286936 2R 18708151..18708365 2373..2159 1075 100 Minus
2R 25286936 2R 18710694..18710819 126..1 630 100 Minus
2R 25286936 2R 18708422..18708534 2158..2046 565 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18711066..18711820 877..123 3775 100 Minus
2R 25260384 2R 18710369..18711006 1514..877 3190 100 Minus
2R 25260384 2R 18709786..18710317 2045..1514 2660 100 Minus
2R 25260384 2R 18709350..18709564 2373..2159 1075 100 Minus
2R 25260384 2R 18711893..18712018 126..1 630 100 Minus
2R 25260384 2R 18709621..18709733 2158..2046 565 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:31:28 has no hits.

LD05535.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:32:24 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14595281..14595494 2159..2372 100 <- Minus
chr2R 14595551..14595663 2046..2158 100 <- Minus
chr2R 14595716..14596246 1515..2045 99 <- Minus
chr2R 14596300..14596936 878..1514 99 <- Minus
chr2R 14596997..14597748 126..877 98 <- Minus
chr2R 14597825..14597949 1..125 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:10 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 1..2223 45..2267 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:39 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 1..2223 45..2267 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:54 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 1..2223 45..2267 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:21 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 1..2223 45..2267 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:31:52 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 1..2223 45..2267 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:35 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 42..2413 1..2372 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:39 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 42..2413 1..2372 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:54 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 47..2418 1..2372 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:21 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 42..2413 1..2372 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:31:52 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
CG15087-RA 47..2418 1..2372 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:24 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18708152..18708365 2159..2372 100 <- Minus
2R 18708422..18708534 2046..2158 100 <- Minus
2R 18708587..18709117 1515..2045 100 <- Minus
2R 18709170..18709806 878..1514 100 <- Minus
2R 18709867..18710618 126..877 100 <- Minus
2R 18710695..18710819 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:24 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18708152..18708365 2159..2372 100 <- Minus
2R 18708422..18708534 2046..2158 100 <- Minus
2R 18708587..18709117 1515..2045 100 <- Minus
2R 18709170..18709806 878..1514 100 <- Minus
2R 18709867..18710618 126..877 100 <- Minus
2R 18710695..18710819 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:24 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18708152..18708365 2159..2372 100 <- Minus
2R 18708422..18708534 2046..2158 100 <- Minus
2R 18708587..18709117 1515..2045 100 <- Minus
2R 18709170..18709806 878..1514 100 <- Minus
2R 18709867..18710618 126..877 100 <- Minus
2R 18710695..18710819 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:54 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14595657..14595870 2159..2372 100 <- Minus
arm_2R 14595927..14596039 2046..2158 100 <- Minus
arm_2R 14596092..14596622 1515..2045 100 <- Minus
arm_2R 14596675..14597311 878..1514 100 <- Minus
arm_2R 14597372..14598123 126..877 100 <- Minus
arm_2R 14598200..14598324 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:56 Download gff for LD05535.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18709351..18709564 2159..2372 100 <- Minus
2R 18709621..18709733 2046..2158 100 <- Minus
2R 18709786..18710316 1515..2045 100 <- Minus
2R 18710369..18711005 878..1514 100 <- Minus
2R 18711066..18711817 126..877 100 <- Minus
2R 18711894..18712018 1..125 100   Minus

LD05535.pep Sequence

Translation from 44 to 2266

> LD05535.pep
MAETKANPFDMDSSSFDAEKYLERLLKDCSLKQIMDTEAAVVKDTQTLHS
DMQTLVYENYNKFISATDTIRRMKDDFKQMETDVNLLMTKMQSITTFSEQ
ITGTLQGTRSQLCRLSEKHSLLKRLQFLSTLPAKLKSLIEEQNYAQAVQD
YLHAQKVFAQYGRQPSFDGIQRDCDAIMADLKEQLRSDFQRAGNTAQSLT
EIGELLLQLDEKTSDLASEMLTCAGKRLHEQIVMLQDQTERDMLEFVDMG
IDGFLNDLALVVTSYFDMFVAKHYEHERDDFQENALQELNVFLNQNIEKY
LTLVQDRVESDIGYGDTQVMLRALDRLHRRLQAMRNICRGLEVQRNTVSI
IISAAHQLCDAHAKNLKDHFADSLSAVRLSLVSAKSDAAAGLNLGDLISN
LYVSMVEKIKGVLQDLLIFLRTDWSFNIKAEHKGALCVEGIRENLLIGFL
RHIAKVMCGFGDASSSSPPNLLLVLSKTCLELEQQGVHILIALVDDLYEI
DSENSATLTHETEICAEMRETAQSLLDAYVRLQGTNISQMLRKSVETRDW
LNCLEPRSVRAVMKRVVEELGSIETVVASLYEANTNATSGFRTTASSDSS
RKTYFSNFASTSKPQYRSNWSNYTPSQLESSYVSNIHRLFSERVEIFTSV
EFTKASIIMGIIKIGLKTLLECVRLRTFSKFGLQQIQVDAHYLQMNLWRF
VSDENLVNFLLDEILGSAVQRCLESVLMEPNAVEIICERG*

LD05535.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13761-PA 739 GF13761-PA 1..739 1..740 3809 96.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20952-PA 740 GG20952-PA 1..740 1..740 3935 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21850-PA 736 GH21850-PA 2..736 3..740 3736 94.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Vps51-PA 740 CG15087-PA 1..740 1..740 3728 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20350-PA 732 GI20350-PA 4..732 5..740 3617 92.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11316-PA 738 GL11316-PA 1..738 1..740 3750 94.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13481-PA 738 GA13481-PA 1..738 1..740 3740 94.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19883-PA 740 GM19883-PA 1..740 1..740 3928 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25366-PA 740 GD25366-PA 1..740 1..740 3960 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22073-PA 736 GJ22073-PA 4..736 5..740 3722 94.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20712-PA 737 GK20712-PA 1..737 1..740 3696 93.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13891-PA 740 GE13891-PA 1..740 1..740 3936 99.3 Plus

LD05535.hyp Sequence

Translation from 44 to 2266

> LD05535.hyp
MAETKANPFDMDSSSFDAEKYLERLLKDCSLKQIMDTEAAVVKDTQTLHS
DMQTLVYENYNKFISATDTIRRMKDDFKQMETDVNLLMTKMQSITTFSEQ
ITGTLQGTRSQLCRLSEKHSLLKRLQFLSTLPAKLKSLIEEQNYAQAVQD
YLHAQKVFAQYGRQPSFDGIQRDCDAIMADLKEQLRSDFQRAGNTAQSLT
EIGELLLQLDEKTSDLASEMLTCAGKRLHEQIVMLQDQTERDMLEFVDMG
IDGFLNDLALVVTSYFDMFVAKHYEHERDDFQENALQELNVFLNQNIEKY
LTLVQDRVESDIGYGDTQVMLRALDRLHRRLQAMRNICRGLEVQRNTVSI
IISAAHQLCDAHAKNLKDHFADSLSAVRLSLVSAKSDAAAGLNLGDLISN
LYVSMVEKIKGVLQDLLIFLRTDWSFNIKAEHKGALCVEGIRENLLIGFL
RHIAKVMCGFGDASSSSPPNLLLVLSKTCLELEQQGVHILIALVDDLYEI
DSENSATLTHETEICAEMRETAQSLLDAYVRLQGTNISQMLRKSVETRDW
LNCLEPRSVRAVMKRVVEELGSIETVVASLYEANTNATSGFRTTASSDSS
RKTYFSNFASTSKPQYRSNWSNYTPSQLESSYVSNIHRLFSERVEIFTSV
EFTKASIIMGIIKIGLKTLLECVRLRTFSKFGLQQIQVDAHYLQMNLWRF
VSDENLVNFLLDEILGSAVQRCLESVLMEPNAVEIICERG*

LD05535.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15087-PA 740 CG15087-PA 1..740 1..740 3728 100 Plus