Clone LD05576 Report

Search the DGRC for LD05576

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:55
Well:76
Vector:pBS SK-
Associated Gene/TranscriptCG10495-RA
Protein status:LD05576.pep: gold
Preliminary Size:1530
Sequenced Size:1388

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10495 2001-01-01 Release 2 assignment
CG10495 2001-11-09 Blastp of sequenced clone
CG10495 2003-01-01 Sim4 clustering to Release 3
CG10495 2008-04-29 Release 5.5 accounting
CG10495 2008-08-15 Release 5.9 accounting
CG10495 2008-12-18 5.12 accounting

Clone Sequence Records

LD05576.complete Sequence

1388 bp (1388 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069347

> LD05576.complete
AAGTTTGGCAATTGTTTATTTTTGTTTACCTTTAAATATTTTATAACCAT
GCACCTGCCGCAACAGAGACCGCACCACGACATCGCTGCGATGTTCGCGG
AAGCACAATCGGATTTCGTGCGGGTCAGCGCTCCAATGGTGCGCTATAGT
AAGCTGGAATTTCGGCGTCTAGTACGACTGAATGGAGTACAACTCGCGTT
TACGCCCATGATGATCTCAGACTCCATTAACAACAGCGAAAAGGCCCGCC
AGAACGAGTTCTCCACGGGTGCGGATGACCAGCCGCTGATCGCTCAGTTT
GCGGCCAAGGATCCTACGGAATTCGTCACCTCCGCCCAGCTCATCTACCC
ATATGTCGATGGCATCGATCTAAATTGCGGATGTCCACAAAGCTGGGCAA
TGGCGAAAGGTTACGGTTGCGGAATGCTGCGCCAGCCGGAGCTAGTGCAT
CAAGTGGTTCAGGAGGTGAGGCGCACACTGCCCGGGGATTTCAGTGTCTC
GGTGAAGATGCGTCTGCTGGGAGGAGAGGAGTCCTTGCAGCGCACTATCG
ATTTAGCCCGTCAGTTGGAGAGCGCGGGCGTCACCTTTCTAACTCTTCAC
GGTCGGACGCCAGCCCAAAAACACTCTAAGGACACGCTAGACATCCCAGC
CATGTCTCAGGTGCGCCAATCCCTGCAGATCCCCCTGATAGTCAACGGCA
ATGTGGAGAGCTATAGGGATGCTTGCGATATGCATGAACAGACGGGAGCA
GCTGGTGTAATGGCTGCTCGAGGCTTGCTTGCTAATCCGGCTCTCTTCAA
TAGCAACTATCCAGATGGTAAAACAACGCCACTGTCCTGTGTACAACAGT
GGCTAGATATAGCCTCTGCTGCCGGGGATAACCTGCTTTTCCAGTGCTTT
CACCACCACCTCACCTTTATGTATAGCGCTCAAATGAAGCGAGATCTTCG
AGTGCAATTCAACAGTTTGGGTTCCAAAGAACAGGTCGTGGACTTCCTGA
AGGAGCACTACAATCTGGAATATAGTGAGGTTGACCCTCCATCGGCTGAC
TACACGGATTGCACGTACACCCACTTCACACCGCCCAAGCACGCCCGGCA
CATCGCCGCCGAGTCGGATGAGCAGGCCTGGAGTTCGAAAAGCGACGGAA
AATTCTTTACGGTATTCAGAGCACACCAGTTGACCGGAACTGGCGGAGAA
GATTTGGAACTGGGAGGACTCTTTGGTGACGAGGAGTAAATTGTTTTGTA
AATAGATCTTTAGTTTGGTGGGGTATAGATTTTGTACAAGACAAATAGGT
TGATATCTAATATATGTAAACATTGTATAGTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD05576.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-RA 1423 CG10495-RA 42..1382 1..1341 6690 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19062133..19063328 137..1332 5980 100 Plus
chr2L 23010047 chr2L 19061936..19062071 1..136 680 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19063531..19064735 137..1341 6010 99.9 Plus
2L 23513712 2L 19063334..19063469 1..136 680 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19063531..19064735 137..1341 6010 99.9 Plus
2L 23513712 2L 19063334..19063469 1..136 680 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:59:16 has no hits.

LD05576.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:59:54 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19061936..19062071 1..136 100 -> Plus
chr2L 19062133..19063328 137..1332 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:17 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 1..1191 49..1239 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:37 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 1..1191 49..1239 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:23:46 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 1..1191 49..1239 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:16 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 1..1191 49..1239 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:52:12 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 1..1191 49..1239 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:40 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 10..1341 1..1332 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:37 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 10..1341 1..1332 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:46 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 40..1371 1..1332 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:17 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 10..1341 1..1332 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:52:12 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
CG10495-RA 40..1371 1..1332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:59:54 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19063334..19063469 1..136 100 -> Plus
2L 19063531..19064726 137..1332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:59:54 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19063334..19063469 1..136 100 -> Plus
2L 19063531..19064726 137..1332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:59:54 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19063334..19063469 1..136 100 -> Plus
2L 19063531..19064726 137..1332 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:46 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19063334..19063469 1..136 100 -> Plus
arm_2L 19063531..19064726 137..1332 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:38 Download gff for LD05576.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19063531..19064726 137..1332 100   Plus
2L 19063334..19063469 1..136 100 -> Plus

LD05576.hyp Sequence

Translation from 0 to 1238

> LD05576.hyp
KFGNCLFLFTFKYFITMHLPQQRPHHDIAAMFAEAQSDFVRVSAPMVRYS
KLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQF
AAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVH
QVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLH
GRTPAQKHSKDTLDIPAMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGA
AGVMAARGLLANPALFNSNYPDGKTTPLSCVQQWLDIASAAGDNLLFQCF
HHHLTFMYSAQMKRDLRVQFNSLGSKEQVVDFLKEHYNLEYSEVDPPSAD
YTDCTYTHFTPPKHARHIAAESDEQAWSSKSDGKFFTVFRAHQLTGTGGE
DLELGGLFGDEE*

LD05576.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-PA 396 CG10495-PA 1..396 17..412 2081 100 Plus
CG3645-PC 505 CG3645-PC 31..386 42..386 359 29.2 Plus
CG3645-PB 505 CG3645-PB 31..386 42..386 359 29.2 Plus
CG3645-PA 505 CG3645-PA 31..386 42..386 359 29.2 Plus
CG1434-PB 473 CG1434-PB 27..280 42..285 201 23.6 Plus

LD05576.pep Sequence

Translation from 48 to 1238

> LD05576.pep
MHLPQQRPHHDIAAMFAEAQSDFVRVSAPMVRYSKLEFRRLVRLNGVQLA
FTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAKDPTEFVTSAQLIY
PYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLPGDFSV
SVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKDTLDIP
AMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALF
NSNYPDGKTTPLSCVQQWLDIASAAGDNLLFQCFHHHLTFMYSAQMKRDL
RVQFNSLGSKEQVVDFLKEHYNLEYSEVDPPSADYTDCTYTHFTPPKHAR
HIAAESDEQAWSSKSDGKFFTVFRAHQLTGTGGEDLELGGLFGDEE*

LD05576.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14697-PA 395 GF14697-PA 1..395 1..396 1751 83.3 Plus
Dana\GF22874-PA 509 GF22874-PA 31..387 26..370 381 30.2 Plus
Dana\GF22885-PA 513 GF22885-PA 31..387 26..370 372 29.8 Plus
Dana\GF15959-PA 460 GF15959-PA 14..270 26..272 202 25.5 Plus
Dana\GF22896-PA 148 GF22896-PA 31..148 26..143 181 33.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21157-PA 396 GG21157-PA 1..396 1..396 2004 92.7 Plus
Dere\GG24669-PA 505 GG24669-PA 31..303 26..300 362 32.2 Plus
Dere\GG17837-PA 473 GG17837-PA 27..268 26..257 206 26.6 Plus
Dere\GG21206-PA 609 GG21206-PA 265..490 26..250 160 26.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11083-PA 398 GH11083-PA 1..398 1..396 1583 74 Plus
Dgri\GH10224-PA 503 GH10224-PA 29..384 26..370 389 30.2 Plus
Dgri\GH12926-PA 460 GH12926-PA 14..251 26..250 180 24.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10495-PA 396 CG10495-PA 1..396 1..396 2081 100 Plus
CG3645-PC 505 CG3645-PC 31..386 26..370 359 29.2 Plus
CG3645-PB 505 CG3645-PB 31..386 26..370 359 29.2 Plus
CG3645-PA 505 CG3645-PA 31..386 26..370 359 29.2 Plus
CG1434-PB 473 CG1434-PB 27..280 26..269 201 23.6 Plus
CG1434-PA 473 CG1434-PA 27..280 26..269 201 23.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17600-PA 397 GI17600-PA 1..397 1..396 1555 70.4 Plus
Dmoj\GI15082-PA 510 GI15082-PA 26..318 26..321 368 33.3 Plus
Dmoj\GI14629-PA 458 GI14629-PA 13..250 26..250 190 24.2 Plus
Dmoj\GI20204-PA 614 GI20204-PA 272..495 28..250 156 23.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26162-PA 398 GL26162-PA 1..398 1..396 1832 83.4 Plus
Dper\GL25830-PA 507 GL25830-PA 30..322 26..321 374 32.2 Plus
Dper\GL14922-PA 463 GL14922-PA 19..257 28..253 205 26.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10353-PA 398 GA10353-PA 1..398 1..396 1837 83.4 Plus
Dpse\GA25459-PA 507 GA25459-PA 30..322 26..321 370 31.9 Plus
Dpse\GA26573-PA 463 GA26573-PA 19..257 28..253 205 26.8 Plus
Dpse\GA10329-PA 615 GA10329-PA 271..496 26..250 159 24.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17321-PA 316 GM17321-PA 1..312 1..312 1638 97.1 Plus
Dsec\GM16688-PA 503 GM16688-PA 31..303 26..300 364 32.5 Plus
Dsec\GM17665-PA 473 GM17665-PA 27..264 26..250 211 26.9 Plus
Dsec\GM17377-PA 605 GM17377-PA 261..486 26..250 160 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24181-PA 396 GD24181-PA 1..396 1..396 2081 97 Plus
Dsim\GD22975-PA 505 GD22975-PA 31..303 26..300 364 32.5 Plus
Dsim\GD17163-PA 460 GD17163-PA 14..255 26..257 205 26.6 Plus
Dsim\GD24232-PA 605 GD24232-PA 261..486 26..250 160 25.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17945-PA 399 GJ17945-PA 1..399 1..396 1595 73.4 Plus
Dvir\GJ17247-PA 504 GJ17247-PA 28..320 26..321 375 33.8 Plus
Dvir\GJ13589-PA 590 GJ13589-PA 246..471 26..250 151 23.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14658-PA 404 GK14658-PA 1..403 1..396 1614 76 Plus
Dwil\GK21069-PA 519 GK21069-PA 33..390 26..370 387 30.1 Plus
Dwil\GK10156-PA 458 GK10156-PA 14..254 26..253 202 26.6 Plus
Dwil\GK14924-PA 579 GK14924-PA 235..460 26..250 162 24.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13230-PA 395 GE13230-PA 1..395 1..395 2007 93.2 Plus
Dyak\GE16327-PA 505 GE16327-PA 31..386 26..370 375 29.8 Plus
Dyak\GE17129-PA 473 GE17129-PA 27..283 26..272 201 25.7 Plus
Dyak\GE13280-PA 609 GE13280-PA 265..490 26..250 167 25.9 Plus