Clone LD05592 Report

Search the DGRC for LD05592

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:55
Well:92
Vector:pBS SK-
Associated Gene/TranscriptCoop-RA
Protein status:LD05592.pep: gold
Preliminary Size:1787
Sequenced Size:1700

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1621 2001-01-01 Release 2 assignment
CG1621 2002-06-06 Blastp of sequenced clone
CG1621 2003-01-01 Sim4 clustering to Release 3
CG1621 2008-04-29 Release 5.5 accounting
CG1621 2008-08-15 Release 5.9 accounting
CG1621 2008-12-18 5.12 accounting

Clone Sequence Records

LD05592.complete Sequence

1700 bp (1700 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119577

> LD05592.complete
CTGCCGCCTCGCCTGCGCCTGCTTCTTCTTCTTCTGCTTCTCCTGCTTCT
TCTTCCTCTTCTTGGGTCTTCTGTTCGTGGCAAAGCCTGTTGCTCAAGCC
TCTCTCCTCCTTCCCGATCCCGCAGCTCCGCCTTCGCCTTTGCCTGTGCC
GTCGCAACCAGCTCCGTCCGCTCTTTCCACAATTCTCTCTCGGCACCGCC
AAAAGGCACGTAAACTGGTTGTTGCTGGCTGGGCCGTACACTTCGTGGTG
CCCGTATTTTTCGTATTTTCAGTGCTGCCTGAACGCTTGAGCTGCGCGAG
TCGCTTGCCGGGAAACTCGGAGTTGGAATCGGAACTGGATCTGGCTAACT
AGCTATCGGGCTATCGGAAATTGGCCACTCGGATCTGGACATGGAGATGG
CCTACAATGCGTCATCGTCGGCGGCCTCCGTCGGCTCTGCTTCTGCCGCC
GCCTCTGCCACCGCCTCCTTCGCCTTCACCAACACCGCCAAGCTGCCCAT
CGAAACGGTGAAGCGCCTGATTGCCGCCGTCTCACGACGTCCGATGTTGT
GGCTGCGCAACAATGCCAATGGCCAGAAGCGCAGCGACATCACGCCTGTT
TGGTTCGAGGTGGGTCAGGATGTGAATTTGCCAGCCGACATCTGCCGAAT
TAAGTGGGGCCACCTGAGGGACAACTTTCGCAAGGTGTACATCCGCAATA
ACCTGTCCAATGAGACGCCCTCGTCGTGGCGCTTCTACAACGATATGCGG
TTCATGGAGCCCGCCGTTCACGAGAATATCATGCGTCAGACGCGAAGCAG
CAGCAAGAAGCACCCACCCGGACACTGGACGGAGAACAATAATGTGCTGG
GGCCGGACAAGTATGACTCAATGCCCATTGTTGCTACGGAGCCCATATGC
GAGCTCAGCCACAGCTATGACTCGGAGCTACACCAGCCCAGCTTCTCGGA
CATCAGTTCGTTCTTCGAGGATCGCGACTGCCAGCCGCCGGAGAATAAGA
GATTTAAGTCGGAGCCCAGTCAGAGGGAGGAGGACGAGGAGGATGACGAT
GACTTCGACGAAGATGCCGCCTCGGAGAACTTGGAAGAGGAACGCGGCAA
TCGTGCCGATGCTGCCAGTTCCGGTGTATTCACCATAGAAGTGCTCGATG
ACGACGACGAAATGGAGCAGGCGGTGACCAAGACCAAGGCGAATAACACT
AGCCACGGCGGATCCAGCCTGAAGAGCGAGCAGGAGGCCAAGGTGTTCTC
CAATTCGCAGTCACCCACCGCCGATCTGCCATTCAAGTATATCAGCACGG
ATGTGGCCACGAATACGGATCCCTCTGGTGGAGATCTCCAGGACGAGGCG
GATCGCATGTTCCTGCTCAGTCTGATGCCCTTCCTGCAAAGATTGGACAG
CCGCCGGCGTCTGCGCGTGCGCCAGAAATTACAGAACGTGCTCATCGAGG
AACTGGAGTTTGGCTGAGGACGCGTATATCCGGGGGAATGTGGGGAGATT
TACTTTATAAGCCTAGCTTACAGTATTATAAGAACGCGACTGACTAACTC
TGTGAATCTGCCTACATACGTAGCATGTAATCAGTATTCCGGCCTGCTTT
CCTTCATACCAACACACTTCAATACATACCATATTGCATTACAATACATA
TTTACACTTCAAATAGACGATCACGCCAGCAAAAAAAAAAAAAAAAAAAA

LD05592.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1621.c 2230 CG1621.c 331..2011 1..1681 8405 100 Plus
CG1621.e 2917 CG1621.e 1018..2698 1..1681 8405 100 Plus
CG1621.b 2324 CG1621.b 425..2105 1..1681 8405 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3378188..3379236 1680..632 5245 100 Minus
chr2R 21145070 chr2R 3379298..3379931 634..1 3170 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7490835..7491884 1681..632 5250 100 Minus
2R 25286936 2R 7491946..7492579 634..1 3170 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7492034..7493083 1681..632 5250 100 Minus
2R 25260384 2R 7493145..7493778 634..1 3170 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:21:28 has no hits.

LD05592.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:22:19 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3378188..3379233 635..1680 100 <- Minus
chr2R 3379298..3379442 490..634 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:19 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1621-RA 1..1077 391..1467 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:31:04 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1621-RA 1..1077 391..1467 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:12 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
Coop-RA 1..1077 391..1467 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:21:10 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1621-RA 1..1077 391..1467 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:20 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
Coop-RA 1..1077 391..1467 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:01:00 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1621-RA 1..1680 1..1680 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:31:04 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1621-RA 1..1680 1..1680 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:12 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
Coop-RA 11..1690 1..1680 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:21:10 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
CG1621-RA 1..1680 1..1680 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:20 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
Coop-RA 11..1690 1..1680 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:19 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7490836..7491881 635..1680 100 <- Minus
2R 7491946..7492579 1..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:19 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7490836..7491881 635..1680 100 <- Minus
2R 7491946..7492579 1..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:19 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7490836..7491881 635..1680 100 <- Minus
2R 7491946..7492579 1..634 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:12 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3378341..3379386 635..1680 100 <- Minus
arm_2R 3379451..3380084 1..634 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:54:58 Download gff for LD05592.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7492035..7493080 635..1680 100 <- Minus
2R 7493145..7493778 1..634 100   Minus

LD05592.pep Sequence

Translation from 390 to 1466

> LD05592.pep
MEMAYNASSSAASVGSASAAASATASFAFTNTAKLPIETVKRLIAAVSRR
PMLWLRNNANGQKRSDITPVWFEVGQDVNLPADICRIKWGHLRDNFRKVY
IRNNLSNETPSSWRFYNDMRFMEPAVHENIMRQTRSSSKKHPPGHWTENN
NVLGPDKYDSMPIVATEPICELSHSYDSELHQPSFSDISSFFEDRDCQPP
ENKRFKSEPSQREEDEEDDDDFDEDAASENLEEERGNRADAASSGVFTIE
VLDDDDEMEQAVTKTKANNTSHGGSSLKSEQEAKVFSNSQSPTADLPFKY
ISTDVATNTDPSGGDLQDEADRMFLLSLMPFLQRLDSRRRLRVRQKLQNV
LIEELEFG*

LD05592.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13677-PA 360 GF13677-PA 21..360 31..358 1236 75.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10742-PA 357 GG10742-PA 1..357 1..358 1878 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20596-PA 383 GH20596-PA 1..383 1..358 1177 64.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Coop-PB 358 CG1621-PB 1..358 1..358 1863 100 Plus
Coop-PA 358 CG1621-PA 1..358 1..358 1863 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19796-PA 342 GI19796-PA 1..342 1..358 1162 67.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20118-PA 354 GL20118-PA 1..354 1..358 1167 71.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14051-PA 354 GA14051-PA 1..354 1..358 1167 71.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20789-PA 358 GM20789-PA 1..358 1..358 1875 97.5 Plus
Dsec\GM17450-PA 82 GM17450-PA 1..81 1..81 416 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10250-PA 358 GD10250-PA 1..358 1..358 1883 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18452-PA 347 GJ18452-PA 3..347 1..358 1268 70.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10703-PA 353 GK10703-PA 28..353 26..358 1063 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23948-PA 357 GE23948-PA 1..357 1..358 1867 97.8 Plus

LD05592.hyp Sequence

Translation from 390 to 1466

> LD05592.hyp
MEMAYNASSSAASVGSASAAASATASFAFTNTAKLPIETVKRLIAAVSRR
PMLWLRNNANGQKRSDITPVWFEVGQDVNLPADICRIKWGHLRDNFRKVY
IRNNLSNETPSSWRFYNDMRFMEPAVHENIMRQTRSSSKKHPPGHWTENN
NVLGPDKYDSMPIVATEPICELSHSYDSELHQPSFSDISSFFEDRDCQPP
ENKRFKSEPSQREEDEEDDDDFDEDAASENLEEERGNRADAASSGVFTIE
VLDDDDEMEQAVTKTKANNTSHGGSSLKSEQEAKVFSNSQSPTADLPFKY
ISTDVATNTDPSGGDLQDEADRMFLLSLMPFLQRLDSRRRLRVRQKLQNV
LIEELEFG*

LD05592.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Coop-PB 358 CG1621-PB 1..358 1..358 1863 100 Plus
Coop-PA 358 CG1621-PA 1..358 1..358 1863 100 Plus