Clone LD05628 Report

Search the DGRC for LD05628

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:56
Well:28
Vector:pBS SK-
Associated Gene/Transcriptfend-RB
Protein status:LD05628.pep: gold
Sequenced Size:1454

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
ld14 2008-04-29 Release 5.5 accounting
ld14 2008-04-29 Picked prior to 5.5
ld14 2008-08-15 Release 5.9 accounting
fend 2008-12-18 5.12 accounting

Clone Sequence Records

LD05628.complete Sequence

1454 bp assembled on 2007-07-18

GenBank Submission: BT030985

> LD05628.complete
CAGCCGAAGCGAAAAGAGAGGTAGAGAGTAGGATTTACAGCTTCTTCGCT
TCACTAAATGCAGTCGACGCTGCGATTATTATGTGCCAGCTCCAATAACA
ACAAACGCAGCAGCAGCAAAAAACCGCCGCAGCAGCAGCAGCAACAACAA
CAACAACAGCACCACCACTTGATACGAAAATAAACAAACAAAATCAATCA
ATTAATCAATCTGCTGAGCACACCGCTCTCCACGCCCACACACACACGCG
CAACAACACAGGCACAACAACAACACACACGAGTGCAAGTCAACGCCCAC
GCCCATTGGAGAAAAAGGAGGGAGTGGCAGGACGACAACAAGCAAAGGAG
TCGTTGGAGAAAGGAGGAGGCGAACCACGAGGACGAAGACAACATGTTCC
ACTCACTTGTTTTGATGGCCTGCGCCCTTGCCGCCCTCTCCGTCGCCCAG
GGGGCGGGGTCCGCTCGATCCAAATCGCTGCCGTTATCGCTATCGCTATC
GGTATCGGTATCCTCGTCATTGGCATCGGCATCCAGTCCAGGAGCTGCTG
CTGACCCAACAGCCGCCTTCACCGTCACCGCGACCGCCCCCACCCCCGCA
AGTGCTCCCTTTGCCGGCAAACAGCTAAACAGATGCCGTCAAAGTTGCTA
TCAGCAGCTTTCCAAGGACTGGCATTATTGTAAGGATTCCGTTGATTGCA
CAAACTGCTGCCAAAAGCTGGTGGCACCATTCGAGTTGCGTATCCTGAAG
GCCCAGCGCCAGGAGTCGCTCGTCCTAACGGACATCGGCTGGGATGAGAT
GATAGCGAATGCCTCGCGCCAGTGCCTCATCACCTGGGAAGTGTCCGGCG
GCGGGCTCATCGGCAATCTGCTAACGGACACCGCACGGGCGGAACTCTCC
TTGTGGCCGGACACCGTCTACAACATCCAGGTCAAGTGCAAGCACAAGCT
CACGGGTCTGATGCGACGTTCGATCAAGCTAAATGTGGACACCAGCCAGT
TGGTGGGCACAACAACGACCACGACGACCAGTAAATCGAGTATCCAGCGG
CAGCATTTGGAGCAGCCAGTGGATCATACTGATGCCTTGGAGCACTCGCA
GCACATTCGCATCCCGCGGCCCACGGATCGTGTGTATATAATCAGTGCAC
TGCCCACGCCCAGCGAACTGGGCGGTGTGGTTTATCCGGCCTTCGGGGCG
CTGGCCTTCTTCCTGGCCCTGCTGGTCATGTTCCTCTTCCTGCGTCCGCA
GCGCAAGCGATTCCCTCTGGATGCGGACAGTGCGGACACGGCAACGTTGA
TAGGTCGCAGTTCGAGCAGCTCGAGGAACTCAATGGACGCCTCTACGCTG
CATGTCTAAGGCGGAGGTTGCCCGGAGAACTTGTAGTCGTATATATATAG
ATGTCTGACTATGTGATATTCTGCACCCCAAAAACAAAAAAAAAAAAAAA
AAAA

LD05628.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
fend.a 2648 fend.a 698..2149 1..1452 7245 99.9 Plus
fend-RB 2168 fend-RB 698..2149 1..1452 7245 99.9 Plus
fend.d 2609 fend.d 698..2149 1..1452 7245 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9025715..9026371 657..1 3270 99.8 Minus
chrX 22417052 chrX 9016961..9017449 1435..947 2430 99.8 Minus
chrX 22417052 chrX 9017853..9018095 948..706 1215 100 Minus
chrX 22417052 chrX 9018859..9018910 705..654 260 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9133940..9134596 657..1 3285 100 Minus
X 23542271 X 9125151..9125656 1452..947 2515 99.8 Minus
X 23542271 X 9126060..9126302 948..706 1215 100 Minus
X 23542271 X 9127066..9127117 705..654 260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9142038..9142694 657..1 3285 100 Minus
X 23527363 X 9133249..9133754 1452..947 2515 99.8 Minus
X 23527363 X 9134158..9134400 948..706 1215 100 Minus
X 23527363 X 9135164..9135215 705..654 260 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:52:50 has no hits.

LD05628.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:53:58 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9016968..9017447 949..1428 99 <- Minus
chrX 9017853..9018095 706..948 100 <- Minus
chrX 9018859..9018906 658..705 100 <- Minus
chrX 9025715..9026210 162..657 99 == Minus
chrX 9026266..9026371 1..106 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:24 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
fend-RB 1..966 394..1359 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:26:03 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
fend-RB 1..966 394..1359 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:28:07 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
fend-RB 1..966 394..1359 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:10:56 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
ld14-RB 1..966 394..1359 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:39 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
fend-RB 1..966 394..1359 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:31:37 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
fend-RB 423..1857 1..1435 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:26:03 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
fend-RB 423..1857 1..1435 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:28:07 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
fend-RB 445..1879 1..1435 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:10:57 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
ld14-RB 423..1857 1..1435 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:39 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
fend-RB 445..1879 1..1435 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:53:58 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
X 9125168..9125654 949..1435 100 <- Minus
X 9126060..9126302 706..948 100 <- Minus
X 9127066..9127113 658..705 100 <- Minus
X 9133940..9134596 1..657 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:53:58 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
X 9125168..9125654 949..1435 100 <- Minus
X 9126060..9126302 706..948 100 <- Minus
X 9127066..9127113 658..705 100 <- Minus
X 9133940..9134596 1..657 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:53:58 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
X 9125168..9125654 949..1435 100 <- Minus
X 9126060..9126302 706..948 100 <- Minus
X 9127066..9127113 658..705 100 <- Minus
X 9133940..9134596 1..657 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:28:07 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9020093..9020335 706..948 100 <- Minus
arm_X 9021099..9021146 658..705 100 <- Minus
arm_X 9019201..9019687 949..1435 100 <- Minus
arm_X 9027973..9028629 1..657 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:58:17 Download gff for LD05628.complete
Subject Subject Range Query Range Percent Splice Strand
X 9134158..9134400 706..948 100 <- Minus
X 9135164..9135211 658..705 100 <- Minus
X 9133266..9133752 949..1435 100 <- Minus
X 9142038..9142694 1..657 100   Minus

LD05628.pep Sequence

Translation from 393 to 1358

> LD05628.pep
MFHSLVLMACALAALSVAQGAGSARSKSLPLSLSLSVSVSSSLASASSPG
AAADPTAAFTVTATAPTPASAPFAGKQLNRCRQSCYQQLSKDWHYCKDSV
DCTNCCQKLVAPFELRILKAQRQESLVLTDIGWDEMIANASRQCLITWEV
SGGGLIGNLLTDTARAELSLWPDTVYNIQVKCKHKLTGLMRRSIKLNVDT
SQLVGTTTTTTTSKSSIQRQHLEQPVDHTDALEHSQHIRIPRPTDRVYII
SALPTPSELGGVVYPAFGALAFFLALLVMFLFLRPQRKRFPLDADSADTA
TLIGRSSSSSRNSMDASTLHV*

LD05628.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19195-PA 301 GF19195-PA 1..301 1..321 840 63.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19002-PA 324 GG19002-PA 1..324 1..321 1271 89 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12458-PA 292 GH12458-PA 38..292 73..321 837 65.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
fend-PC 321 CG12664-PC 1..321 1..321 1634 100 Plus
fend-PB 321 CG12664-PB 1..321 1..321 1634 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15055-PA 365 GI15055-PA 1..207 1..204 614 62.8 Plus
Dmoj\GI15055-PA 365 GI15055-PA 290..365 242..321 283 78.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12906-PA 316 GL12906-PA 1..316 1..321 892 65 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11746-PA 314 GA11746-PA 65..314 63..321 911 72.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13679-PA 320 GM13679-PA 1..320 1..321 1318 94.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24562-PA 124 GD24562-PA 1..104 1..104 509 97.1 Plus
Dsim\GD16084-PA 113 GD16084-PA 1..104 190..292 460 92.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14712-PA 312 GJ14712-PA 50..312 72..321 855 65.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10088-PA 323 GK10088-PA 63..295 77..308 757 66.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17415-PA 320 GE17415-PA 1..320 1..321 1271 82.7 Plus

LD05628.hyp Sequence

Translation from 393 to 1358

> LD05628.hyp
MFHSLVLMACALAALSVAQGAGSARSKSLPLSLSLSVSVSSSLASASSPG
AAADPTAAFTVTATAPTPASAPFAGKQLNRCRQSCYQQLSKDWHYCKDSV
DCTNCCQKLVAPFELRILKAQRQESLVLTDIGWDEMIANASRQCLITWEV
SGGGLIGNLLTDTARAELSLWPDTVYNIQVKCKHKLTGLMRRSIKLNVDT
SQLVGTTTTTTTSKSSIQRQHLEQPVDHTDALEHSQHIRIPRPTDRVYII
SALPTPSELGGVVYPAFGALAFFLALLVMFLFLRPQRKRFPLDADSADTA
TLIGRSSSSSRNSMDASTLHV*

LD05628.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
fend-PC 321 CG12664-PC 1..321 1..321 1634 100 Plus
fend-PB 321 CG12664-PB 1..321 1..321 1634 100 Plus