![]() | BDGP Sequence Production Resources |
Search the DGRC for LD05816
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 58 |
Well: | 16 |
Vector: | pBS SK- |
Associated Gene/Transcript | Atg8a-RA |
Protein status: | LD05816.pep: gold |
Preliminary Size: | 1296 |
Sequenced Size: | 1085 |
Gene | Date | Evidence |
---|---|---|
CG32672 | 2002-06-13 | Blastp of sequenced clone |
Atg8a | 2008-04-29 | Release 5.5 accounting |
Atg8a | 2008-08-15 | Release 5.9 accounting |
Atg8a | 2008-12-18 | 5.12 accounting |
1085 bp (1085 high quality bases) assembled on 2002-06-13
GenBank Submission: AY122152
> LD05816.complete AGAAAACAGAGAAGAGAAAAACACAAGCTCAGCAACGCATCGATATTCGG CACAGTCCCAAAAGCAAACGAAGTGATAGAAGCTGCGTTTCTTAGCCAAT TACCTCTTCATTGCAATCATGAAGTTCCAATACAAGGAGGAGCACGCCTT CGAGAAGCGTCGCGCCGAGGGCGACAAGATCCGTCGCAAATATCCAGACC GTGTGCCCGTCATCGTCGAGAAGGCTCCCAAGGCGCGCATCGGTGATTTG GACAAGAAGAAGTACCTGGTGCCTTCCGACCTGACCGTCGGTCAGTTCTA CTTCCTCATTCGCAAGCGCATCCACCTGCGTCCCGAGGATGCCCTCTTCT TCTTTGTGAACAACGTCATTCCACCAACATCGGCTACCATGGGCTCCCTG TACCAGGAACATCACGAGGAGGACTATTTCCTGTACATTGCCTACTCCGA TGAGAATGTTTACGGCATGGCCAAAATTAACTAACTTTGCTCCGGTCGGG ATGCATCGGAATGAAGCCCCCCCCCTATACAGAAATCTATATATAAATAA AATATATTTTGTGTTTAGCATGCAAGCTTACAACATGGACGGCGAGTTAG CTAAACGAATTGAGGAAAACCGCAGGAAATGCCACATGAAAAGAACTTGA AATTGATCTGATACGCAGGGCAACAAAAAAAATCCACAAAAACCGAAAAC TACAAAAACAATTGTTATGTGAACATTATTTTATATATATACATTTTCCA AACGCGTTAGTATTTCAATTAAACTCTGCTTTGTGTCCTACCCATTAACG AAACAACCAACCAACCAACTTTCCCCACAAAAAACAGATCTATTCACACC CTTTCTGGGCCATTTAATTTCCATTGCTGTAATTGATCCGTGCGAATGCT TTGTACTTTACTTTGTTACTTTGCTAATATTTCAATGAATTCACTATTTT TTTTTTTATTCACGATGCAACAAAATTCTGTGCATATTTAGTGTGTATGG TTACGAATAGGACTCTCTCGGTTAAGTGTACGGTAATTAATCTATTATTA AATAAACAAAAACCAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 10656241..10656900 | 1064..405 | 3285 | 99.8 | Minus |
chrX | 22417052 | chrX | 10659342..10659551 | 210..1 | 1050 | 100 | Minus |
chrX | 22417052 | chrX | 10656967..10657165 | 407..209 | 995 | 100 | Minus |
chr3R | 27901430 | chr3R | 13548913..13549250 | 456..119 | 775 | 82 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 10764871..10765537 | 1071..405 | 3305 | 99.7 | Minus |
X | 23542271 | X | 10767979..10768188 | 210..1 | 1050 | 100 | Minus |
X | 23542271 | X | 10765604..10765802 | 407..209 | 995 | 100 | Minus |
3R | 32079331 | 3R | 17724567..17724904 | 456..119 | 775 | 82 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 10772969..10773635 | 1071..405 | 3305 | 99.7 | Minus |
X | 23527363 | X | 10776077..10776286 | 210..1 | 1050 | 100 | Minus |
X | 23527363 | X | 10773702..10773900 | 407..209 | 995 | 100 | Minus |
3R | 31820162 | 3R | 17465398..17465735 | 456..119 | 775 | 81.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3918..3962 | 747..704 | 123 | 77.8 | Minus |
Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 115..218 | 853..754 | 114 | 61 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1065..1093 | 683..655 | 109 | 86.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 10656241..10656898 | 407..1064 | 96 | <- | Minus |
chrX | 10656968..10657165 | 209..406 | 100 | <- | Minus |
chrX | 10659344..10659551 | 1..208 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 1..366 | 119..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 1..366 | 119..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 1..366 | 119..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 1..366 | 119..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 1..366 | 119..484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 148..1211 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 148..1211 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 148..1211 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 148..1211 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg8a-RA | 151..1214 | 1..1064 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10767981..10768188 | 1..208 | 100 | Minus | |
X | 10764878..10765535 | 407..1064 | 99 | <- | Minus |
X | 10765605..10765802 | 209..406 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10767981..10768188 | 1..208 | 100 | Minus | |
X | 10764878..10765535 | 407..1064 | 99 | <- | Minus |
X | 10765605..10765802 | 209..406 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10767981..10768188 | 1..208 | 100 | Minus | |
X | 10764878..10765535 | 407..1064 | 99 | <- | Minus |
X | 10765605..10765802 | 209..406 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 10658911..10659568 | 407..1064 | 99 | <- | Minus |
arm_X | 10659638..10659835 | 209..406 | 100 | <- | Minus |
arm_X | 10662014..10662221 | 1..208 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10772976..10773633 | 407..1064 | 99 | <- | Minus |
X | 10773703..10773900 | 209..406 | 100 | <- | Minus |
X | 10776079..10776286 | 1..208 | 100 | Minus |
Translation from 118 to 483
> LD05816.pep MKFQYKEEHAFEKRRAEGDKIRRKYPDRVPVIVEKAPKARIGDLDKKKYL VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHE EDYFLYIAYSDENVYGMAKIN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20824-PA | 121 | GF20824-PA | 1..121 | 1..121 | 631 | 99.2 | Plus |
Dana\GF23138-PA | 122 | GF23138-PA | 3..118 | 1..116 | 527 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18902-PA | 121 | GG18902-PA | 1..121 | 1..121 | 628 | 97.5 | Plus |
Dere\GG16757-PA | 120 | GG16757-PA | 3..118 | 1..116 | 526 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12106-PA | 119 | GH12106-PA | 1..119 | 1..119 | 617 | 99.2 | Plus |
Dgri\GH15861-PA | 125 | GH15861-PA | 3..118 | 1..116 | 507 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg8a-PA | 121 | CG32672-PA | 1..121 | 1..121 | 638 | 100 | Plus |
Atg8b-PB | 120 | CG12334-PB | 3..118 | 1..116 | 530 | 82.8 | Plus |
Atg8b-PA | 120 | CG12334-PA | 3..118 | 1..116 | 530 | 82.8 | Plus |
Atg8a-PC | 107 | CG32672-PC | 7..107 | 21..121 | 482 | 92.1 | Plus |
Atg8a-PB | 96 | CG32672-PB | 6..96 | 31..121 | 476 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15162-PA | 119 | GI15162-PA | 1..119 | 1..119 | 618 | 99.2 | Plus |
Dmoj\GI23636-PA | 122 | GI23636-PA | 3..122 | 1..120 | 514 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26902-PA | 120 | GL26902-PA | 1..117 | 1..117 | 609 | 99.1 | Plus |
Dper\GL12240-PA | 116 | GL12240-PA | 3..116 | 1..114 | 498 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22662-PA | 120 | GA22662-PA | 1..117 | 1..117 | 609 | 99.1 | Plus |
Dpse\GA11562-PA | 116 | GA11562-PA | 3..116 | 1..114 | 498 | 81.6 | Plus |
Dpse\GA23118-PA | 116 | GA23118-PA | 3..116 | 1..114 | 498 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11288-PA | 121 | GM11288-PA | 1..121 | 1..121 | 632 | 98.3 | Plus |
Dsec\GM15346-PA | 266 | GM15346-PA | 149..264 | 1..116 | 539 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16015-PA | 121 | GD16015-PA | 1..121 | 1..121 | 632 | 98.3 | Plus |
Dsim\GD20217-PA | 227 | GD20217-PA | 110..225 | 1..116 | 538 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14868-PA | 119 | GJ14868-PA | 1..119 | 1..119 | 617 | 99.2 | Plus |
Dvir\GJ24711-PA | 124 | GJ24711-PA | 3..121 | 1..119 | 508 | 79.8 | Plus |
Translation from 118 to 483
> LD05816.hyp MKFQYKEEHAFEKRRAEGDKIRRKYPDRVPVIVEKAPKARIGDLDKKKYL VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHE EDYFLYIAYSDENVYGMAKIN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg8a-PA | 121 | CG32672-PA | 1..121 | 1..121 | 638 | 100 | Plus |
Atg8b-PB | 120 | CG12334-PB | 3..118 | 1..116 | 530 | 82.8 | Plus |
Atg8b-PA | 120 | CG12334-PA | 3..118 | 1..116 | 530 | 82.8 | Plus |
Atg8a-PC | 107 | CG32672-PC | 7..107 | 21..121 | 482 | 92.1 | Plus |
Atg8a-PB | 96 | CG32672-PB | 6..96 | 31..121 | 476 | 100 | Plus |