Clone LD05823 Report

Search the DGRC for LD05823

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:58
Well:23
Vector:pBS SK-
Associated Gene/TranscriptCG14647-RB
Protein status:LD05823.pep: gold
Preliminary Size:1385
Sequenced Size:1223

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14647 2001-01-01 Release 2 assignment
CG14647 2001-11-29 Blastp of sequenced clone
CG14647 2003-01-01 Sim4 clustering to Release 3
CG14647 2008-04-29 Release 5.5 accounting
CG14647 2008-08-15 Release 5.9 accounting
CG9853 2008-08-15 Release 5.9 accounting
CG14647 2008-12-18 5.12 accounting
CG9853 2008-12-18 5.12 accounting

Clone Sequence Records

LD05823.complete Sequence

1223 bp (1223 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069350

> LD05823.complete
CTTTAATGGAATGACGGGGGAAGAACGGGAAGATAAAGCAGCTGAGAATT
GCCAGGCATTGTGGAAATTTTTTAAACTTCCCAATCAAATGAATAGTGAT
CTGAAGGAGAGTGGTTCCGGAGCCAGAAAAGACGACGCCGCACCGGCAGC
CGGCGATTTCGTCGCCGCTAGCGGATTCGCTCCCAATCGTTGGGTCAAAC
TGAACGTGGGTGGACAAATCTACGCCACTACCATCGACACTCTGGTGGGC
AGAGAACCGGATTCAATGCTTGCTAGGATGTTCCTGCAAAATGGCAGCAT
GAAGCCCAGCGAGCGTGACGAGCAGGGAGCATACCTGATTGATCGAAGTC
CTCGATATTTCGAGCCGATCATCAACTACCTCCGCCACGGACAATTCGTA
TGCGATTCGAACATCAGTGTGTTGGGTGTTTTGGAGGAGGCGCGGTTCTT
CGGAATCTTTTCGCTTGTCACCCATTTGGAGGAACGCCTGGGACAGCAGG
AGACGCCGCTGGGGGACAGACCATTGACGCGCAACGACGTCATCAAGGCC
ATCATTCAGACCTCCGTGATAACGGAGCTGCGCTTTCAAGGCGTTAATCT
GTCTGGGGCCGATCTACGAAAGCTAGATTTTCGCAACATTAACTTCAAGT
ATGCCAACATGTCTCACTGCAATTTGTCCCACACCAATCTTAACTACTGC
TGTCTTGAACGGGCGGATCTTCAGTACGCAAACTTGGAATGTGCCCAACT
AGTGTCAGTGCGGGGACTTTGCGCCAATATGGAAGGTGCAAACTTGCGTG
GGTGTAATTTTGAAGACCCAACAGGAGTTCGAACTAATCTAGAGGGTGTT
AACCTCAAAGGAGCATGTTTGGAAAGCAGCAACATGGCCGGTGTTAACTT
ACGTGTGGCAAATTTGAAGAACGCCAATATGAAGAACTGTAATTTGCGAG
CTGCGGTGTTAGCAGGTGCCGACTTGGAAAAATGCAATCTTTCTGGCAGC
GACTTGCAGGAGGCAAATTTGCGTGGGGCAAATTTAAAGGACGCGGAGCT
TACCCTAATGGTGACCCCATTGCACATGTCACAGGCCATACGATGATATC
TTGGTTGGCACCTATCACTAATATTACTGTTATTGACTGTACATACTTAA
AAGTTTAATAGTAGGTTATAAAATAAACAGTATTAGGATTGAATTTCTAA
AAAAAAAAAAAAAAAAAAAAAAA

LD05823.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14647.b 1221 CG14647.b 24..1221 1..1198 5990 100 Plus
CG14647-RB 1221 CG14647-RB 24..1221 1..1198 5990 100 Plus
CG14647.a 1194 CG14647.a 1..1194 1..1198 5905 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 226209..226857 1..649 3245 100 Plus
chr3R 27901430 chr3R 227319..227736 781..1198 2090 100 Plus
chr3R 27901430 chr3R 227071..227205 648..782 675 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4400490..4401138 1..649 3245 100 Plus
3R 32079331 3R 4401600..4402020 781..1201 2105 100 Plus
3R 32079331 3R 4401352..4401486 648..782 675 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4141321..4141969 1..649 3245 100 Plus
3R 31820162 3R 4142431..4142851 781..1201 2105 100 Plus
3R 31820162 3R 4142183..4142317 648..782 675 100 Plus
Blast to na_te.dros performed 2019-03-15 20:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 1505..1545 1189..1150 112 78 Minus

LD05823.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:16:26 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 226209..226857 1..649 100 -> Plus
chr3R 227073..227204 650..781 100 -> Plus
chr3R 227320..227736 782..1198 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:38 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1008 89..1096 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:15 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1008 89..1096 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:50:24 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1008 89..1096 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:51:02 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1008 89..1096 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:16 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1008 89..1096 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:43 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1198 1..1198 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:15 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1198 1..1198 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:24 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1178 21..1198 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:51:02 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1198 1..1198 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:16 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..1178 21..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:26 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4400490..4401138 1..649 100 -> Plus
3R 4401354..4401485 650..781 100 -> Plus
3R 4401601..4402017 782..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:26 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4400490..4401138 1..649 100 -> Plus
3R 4401354..4401485 650..781 100 -> Plus
3R 4401601..4402017 782..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:26 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4400490..4401138 1..649 100 -> Plus
3R 4401354..4401485 650..781 100 -> Plus
3R 4401601..4402017 782..1198 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:24 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 226212..226860 1..649 100 -> Plus
arm_3R 227076..227207 650..781 100 -> Plus
arm_3R 227323..227739 782..1198 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:26 Download gff for LD05823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4141321..4141969 1..649 100 -> Plus
3R 4142185..4142316 650..781 100 -> Plus
3R 4142432..4142848 782..1198 100   Plus

LD05823.hyp Sequence

Translation from 0 to 1095

> LD05823.hyp
FNGMTGEEREDKAAENCQALWKFFKLPNQMNSDLKESGSGARKDDAAPAA
GDFVAASGFAPNRWVKLNVGGQIYATTIDTLVGREPDSMLARMFLQNGSM
KPSERDEQGAYLIDRSPRYFEPIINYLRHGQFVCDSNISVLGVLEEARFF
GIFSLVTHLEERLGQQETPLGDRPLTRNDVIKAIIQTSVITELRFQGVNL
SGADLRKLDFRNINFKYANMSHCNLSHTNLNYCCLERADLQYANLECAQL
VSVRGLCANMEGANLRGCNFEDPTGVRTNLEGVNLKGACLESSNMAGVNL
RVANLKNANMKNCNLRAAVLAGADLEKCNLSGSDLQEANLRGANLKDAEL
TLMVTPLHMSQAIR*

LD05823.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14647-PB 335 CG14647-PB 1..335 30..364 1730 100 Plus
inc-PC 211 CG32810-PC 21..138 62..186 247 44 Plus
inc-PD 211 CG32810-PD 21..138 62..186 247 44 Plus
inc-PB 211 CG32810-PB 21..138 62..186 247 44 Plus
CG10465-PA 301 CG10465-PA 18..170 62..225 163 33.3 Plus

LD05823.pep Sequence

Translation from 10 to 1095

> LD05823.pep
MTGEEREDKAAENCQALWKFFKLPNQMNSDLKESGSGARKDDAAPAAGDF
VAASGFAPNRWVKLNVGGQIYATTIDTLVGREPDSMLARMFLQNGSMKPS
ERDEQGAYLIDRSPRYFEPIINYLRHGQFVCDSNISVLGVLEEARFFGIF
SLVTHLEERLGQQETPLGDRPLTRNDVIKAIIQTSVITELRFQGVNLSGA
DLRKLDFRNINFKYANMSHCNLSHTNLNYCCLERADLQYANLECAQLVSV
RGLCANMEGANLRGCNFEDPTGVRTNLEGVNLKGACLESSNMAGVNLRVA
NLKNANMKNCNLRAAVLAGADLEKCNLSGSDLQEANLRGANLKDAELTLM
VTPLHMSQAIR*

LD05823.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18213-PA 331 GF18213-PA 1..331 27..361 1591 91.1 Plus
Dana\GF20912-PA 266 GF20912-PA 77..194 59..183 259 43.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12384-PA 335 GG12384-PA 1..335 27..361 1713 95.8 Plus
Dere\GG12864-PA 208 GG12864-PA 21..130 59..170 258 47.8 Plus
Dere\GG10865-PA 301 GG10865-PA 18..170 59..222 162 32.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14079-PA 324 GH14079-PA 18..324 56..361 1464 89.6 Plus
Dgri\GH17955-PA 210 GH17955-PA 21..130 59..170 254 46 Plus
Dgri\GH23729-PA 297 GH23729-PA 14..129 59..180 158 35.8 Plus
Dgri\GH20158-PA 297 GH20158-PA 14..129 59..180 158 35.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14647-PB 335 CG14647-PB 1..335 27..361 1730 100 Plus
inc-PC 211 CG32810-PC 21..138 59..183 247 44 Plus
inc-PD 211 CG32810-PD 21..138 59..183 247 44 Plus
inc-PB 211 CG32810-PB 21..138 59..183 247 44 Plus
CG10465-PA 301 CG10465-PA 18..170 59..222 163 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10612-PA 329 GI10612-PA 2..329 33..361 1486 85.7 Plus
Dmoj\GI16490-PA 210 GI16490-PA 21..130 59..170 257 46.9 Plus
Dmoj\GI20668-PA 297 GI20668-PA 14..129 59..180 158 35.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21465-PA 331 GL21465-PA 1..331 27..361 1598 89.9 Plus
Dper\GL14263-PA 210 GL14263-PA 21..117 59..158 252 51 Plus
Dper\GL11047-PA 297 GL11047-PA 14..129 59..180 149 35 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13145-PA 331 GA13145-PA 1..331 27..361 1598 89.9 Plus
Dpse\GA17157-PA 210 GA17157-PA 21..117 59..158 252 51 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10753-PA 335 GM10753-PA 1..335 27..361 1753 98.5 Plus
Dsec\GM19148-PA 211 GM19148-PA 21..130 59..170 257 47.8 Plus
Dsec\GM11095-PA 301 GM11095-PA 18..170 59..222 162 32.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19728-PA 335 GD19728-PA 1..335 27..361 1758 98.8 Plus
Dsim\GD24718-PA 211 GD24718-PA 21..130 59..170 257 47.8 Plus
Dsim\GD10363-PA 301 GD10363-PA 18..170 59..222 162 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22966-PA 187 GJ22966-PA 2..187 176..361 948 97.8 Plus
Dvir\GJ17095-PA 137 GJ17095-PA 14..104 51..134 379 78 Plus
Dvir\GJ16035-PA 210 GJ16035-PA 21..130 59..170 261 46.9 Plus
Dvir\GJ20417-PA 297 GJ20417-PA 14..129 59..180 158 35.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13533-PA 324 GK13533-PA 19..324 57..361 1432 88.9 Plus
Dwil\GK14663-PA 210 GK14663-PA 21..130 59..170 257 46.9 Plus
Dwil\GK21368-PA 388 GK21368-PA 105..257 59..222 157 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25415-PA 335 GE25415-PA 1..335 27..361 1693 94.9 Plus
Dyak\GE11245-PA 301 GE11245-PA 18..170 59..222 157 32.1 Plus