Clone LD05845 Report

Search the DGRC for LD05845

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:58
Well:45
Vector:pBS SK-
Associated Gene/TranscriptCG7453-RA
Protein status:LD05845.pep: gold
Sequenced Size:1813

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7453 2003-01-01 Sim4 clustering to Release 3
CG7453 2008-04-29 Release 5.5 accounting
CG7453 2008-08-15 Release 5.9 accounting
CG7453 2008-12-18 5.12 accounting

Clone Sequence Records

LD05845.complete Sequence

1813 bp (1813 high quality bases) assembled on 2005-06-20

GenBank Submission: BT023512

> LD05845.complete
CGACGCGACGTTTCACTCTTATAAGAATAAGAAATCAGACGACAATGAAG
CTGCTCTATATGCTGTGGCTGCTGAGCATCTTGGTCCTGGTCTCAGGCCA
GCAGAAGCAGACAGCTAACTCCGCCACCAAGGACGCCCCAGTGGTGGCCA
ATGCGACGAACGTGCTGCAGGCCAAAGTTATTCCAGGATCGAAATTGGAA
TCTGGATCTCCGGGAGCTGCCAGCCAGCTGGTGCCGGGTAAGGATGCAGC
TGTGTTGCAACAGGACAAGAACTTAAACAAAACGGCCACAGCAGAAAATG
CAGGTAAAGCCAAAAATCTCACAAACACCGATACAGGAGTGCCCACCATT
CCTTTGGTCACTTCCAAGCCGGCTGTGGAGCAAAAGGCGGCCAAGGAGGC
GACCAATACGACCTCCACTACAACTTCTTCCACCACGACCACCACCACCA
CGGCAAAGCCAGCTGCAGGATCAGCCATAGTCACCGAGGGCCAGTCCATG
AAGGATGTCACCAAGCCGAGCAACTCGTCCACCAACGGCGCGGCAATATC
CCCGACCAACAGCACCCACACCGCCACAGCCACCACCAAAACTGTCAATT
CAACCATCATCGCAACCACGCCAAAGCCGAAGAAGCCCCCAGTGGTATTG
AGCACTGATATACACCAGGAGGGGGAGGATATGGCGGAGCTGGAAAAGAG
TCAGGATAAGCCAGGTACAAAGGGCGCTCCCACCCAGCCATTGGCCACAC
CACCAGAGCCATTGGTGCAGGGGCTTACTGGAAGTAATCTTGCCGATCAC
GGAGAGAACGGGTATGTGGTACCCATTGTTACCGTGCTGCTGACCGTTCC
GCTGGCCATCGGCGTGGTGACCATCATGTACCGCCGCTTCCGCGACATGT
GGAGCACCAGGCACTACCGTCGCATGGACTTCCTGGTGGACGGCATGTAC
AACGACTGACGAAGACGCGGACGACAGGCTGGCGGCAAGGGCGGCCACTT
CACCGGGTGCTCCAACGCCTCCTCCGGCGCACTCGGATGATTATTAGTTG
TTTAAGTTATACACGACTGGACGTGCTTGCATTCAATGCAAGATCGCCGG
ATCGAAAGCAGAGTGAGAGTAGCGGAGAGCAGAGGAGGCGGTGGGAAAAC
GAAACGAAACTATGATATTGCTCAGTCAATTAGAGGAGGAGGAGAAAGGG
ATTCGCTTTGCAGCGTGGCTAGGATACCCTTCCGAGCGGCCAAATTGAAT
TTAAAGCCAACTGATTTTCAACACTAAATTCGAGTGGACTCTTAAGTTTA
AGCATTTGGATTATTGTCAAGCATTTGTTAGCAATCAAAAATTGATACCG
GCACTTATATGTACCCTATATATACATATATCTACTTAGGCTGCTGCTGT
ACATCGAAGGCTGCGGACTCTCAACCATCAACCATCAACATCAACATCAG
CGCAATTAGCAATCACTTGATGCATCCACAATCTAGCCGTAATGTGCCTT
ACGAACCAGCTCTATATACACCTTTACACATGATATTCTCCATCGCCGGG
TCTTCGAGGTGATTTCTTCGCATTTACTTTACGCAACCAAGCAGCAGCAC
TCACTCAAAAAAAAAAAAAACCAGCAGAAACCAAAAACACAAGCAATCGG
CCTGAAACAAGCAAATTTATTGCATACCATGTGTATATACATAAATATGA
ATATATATATATATATATATACATATTTCTTATTGTTATTAATTTAACAA
CTACAATAAAGCAACAAGGCTAAAAAAAAAAAGATATATTTGGAAAAAAA
AAAAAAAAAAAAA

LD05845.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7453-RA 1847 CG7453-RA 58..1847 1..1793 8895 99.8 Plus
CG7453.a 1790 CG7453.a 294..1790 294..1793 7430 99.8 Plus
CG7453.a 1790 CG7453.a 58..294 1..237 1185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19069119..19070913 1..1793 8645 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19180235..19182027 1..1796 8900 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19188333..19190125 1..1796 8910 99.8 Plus
Blast to na_te.dros performed 2019-03-16 10:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy7 5486 gypsy7 GYPSY7 5486bp 311..370 1411..1467 113 70.5 Plus

LD05845.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:14:25 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19069119..19070913 1..1793 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:40 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 1..915 45..959 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:57:29 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 1..915 45..959 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:35 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 1..915 45..959 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:38:20 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 1..915 45..959 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:55 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 1..915 45..959 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:36:56 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 58..1847 1..1793 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:57:29 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 58..1847 1..1793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:35 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 63..1852 1..1793 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:38:21 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 58..1825 1..1771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:55 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
CG7453-RA 63..1852 1..1793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:25 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
X 19180235..19182024 1..1793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:25 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
X 19180235..19182024 1..1793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:25 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
X 19180235..19182024 1..1793 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:35 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19074268..19076057 1..1793 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:16:55 Download gff for LD05845.complete
Subject Subject Range Query Range Percent Splice Strand
X 19188333..19190122 1..1793 99   Plus

LD05845.pep Sequence

Translation from 2 to 958

> LD05845.pep
TRRFTLIRIRNQTTMKLLYMLWLLSILVLVSGQQKQTANSATKDAPVVAN
ATNVLQAKVIPGSKLESGSPGAASQLVPGKDAAVLQQDKNLNKTATAENA
GKAKNLTNTDTGVPTIPLVTSKPAVEQKAAKEATNTTSTTTSSTTTTTTT
AKPAAGSAIVTEGQSMKDVTKPSNSSTNGAAISPTNSTHTATATTKTVNS
TIIATTPKPKKPPVVLSTDIHQEGEDMAELEKSQDKPGTKGAPTQPLATP
PEPLVQGLTGSNLADHGENGYVVPIVTVLLTVPLAIGVVTIMYRRFRDMW
STRHYRRMDFLVDGMYND*

LD05845.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15939-PA 352 GF15939-PA 25..352 50..318 382 47.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19209-PA 283 GG19209-PA 1..283 15..318 983 76.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12517-PA 310 GH12517-PA 211..310 207..318 304 51.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7453-PA 304 CG7453-PA 1..304 15..318 1533 100 Plus
CG34220-PA 726 CG34220-PA 253..401 105..253 154 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14869-PA 346 GI14869-PA 248..346 208..318 294 52.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12978-PA 329 GL12978-PA 216..329 211..318 359 60.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20364-PA 323 GA20364-PA 210..323 211..318 360 63.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22945-PA 284 GM22945-PA 1..284 15..318 1209 86.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17426-PA 284 GD17426-PA 1..284 15..318 1190 86.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19533-PA 311 GJ19533-PA 213..311 208..318 317 54.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25170-PA 318 GK25170-PA 205..318 207..318 294 54.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17774-PA 272 GE17774-PA 19..272 33..318 884 74.8 Plus

LD05845.hyp Sequence

Translation from 2 to 958

> LD05845.hyp
TRRFTLIRIRNQTTMKLLYMLWLLSILVLVSGQQKQTANSATKDAPVVAN
ATNVLQAKVIPGSKLESGSPGAASQLVPGKDAAVLQQDKNLNKTATAENA
GKAKNLTNTDTGVPTIPLVTSKPAVEQKAAKEATNTTSTTTSSTTTTTTT
AKPAAGSAIVTEGQSMKDVTKPSNSSTNGAAISPTNSTHTATATTKTVNS
TIIATTPKPKKPPVVLSTDIHQEGEDMAELEKSQDKPGTKGAPTQPLATP
PEPLVQGLTGSNLADHGENGYVVPIVTVLLTVPLAIGVVTIMYRRFRDMW
STRHYRRMDFLVDGMYND*

LD05845.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7453-PA 304 CG7453-PA 1..304 15..318 1533 100 Plus
CG34220-PA 726 CG34220-PA 253..401 105..253 154 26.8 Plus