Clone LD05882 Report

Search the DGRC for LD05882

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:58
Well:82
Vector:pBS SK-
Associated Gene/TranscripteIF-3p40-RA
Protein status:LD05882.pep: gold
Sequenced Size:1172

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
eIF-3p40 2008-04-29 Picked prior to 5.5

Clone Sequence Records

LD05882.complete Sequence

1172 bp assembled on 2009-03-02

GenBank Submission: BT071794.1

> LD05882.complete
CATGGCAAATCGCGCAAATCGTCATGCTGCTCGCACCGAGGATTCGGATA
ATACCATTAACTACGTCCAATGCGACGGACTGGCCGTCATGAAGATGGTG
AAGCACTGCCATGAGGAGTCGAGCAACATGGACCTCGCCCAGGGCGCCCT
GCTCGGTCTGGTGGTAGACAAGTGCCTGGAGATCACCAACTGCTTCCCGT
TTCCCAAGAGCGGCGATGAGACCATGGACGAGGAGATGTACCAGCTGACC
GTGATGCGTCGCCTGCGTCGCGTCAACGTAGATCATCTCCATGTGGGCTG
GTACCAGAGCTCCGACGTGGGCAACAGCCTGTCAATGGCTCTGTTGGAAT
CGCAGTACCACTACCAGACCAGCATTGAAGAGTCCGTCGTTGTCGTCTAC
GATACGCAGAAGTCATCCCGCGGATTCCTGTGCTTGAAGGCCTACCGCCT
TACTCCGCAGGCCATTCAGATGTACAAGGATGGCGACTTCACTCCAGAGG
CATTCCGCACCCTGAAGGTCGGCTACGAGAACCTCTTCGCCGAGATTCCC
ATTGTGATCAAGAACTCGCCGCTGACCAACATTATGATGAGCGAGCTGAA
CGAGCTGCTGCCCGAGGACAAGGGGCACAACTTCCTGGACCTGGGCACCG
CCACCGTATTGGAGAACCAAATGCGTAGCCTGATCGAGCGCGTCGACGAG
TTGTACCAGGAGGCAGTGCGCTATAACAAGTACCAGCAGGTGGTCTTCAA
GCAGGATACGGAGAAGCACCGTGCTCTGGCTAAGCTGGCCGCCGAGAACG
CCGTTCGCACATCGAAGGGAGAGCCCACGGTGCCAGAGGAGGAAGTGATC
AAACAGTTCCGCCCCATGACTGCGCCCAACCGCCTGACGGCCACCATAAC
CTCTGGCCAGATCAATACCCACGCCCAGCATATCGCACAATTCTGTTCGC
AATCGCTGGCCAAACTCTTCATCACGGAATCGCTGCAAATTGCCAAGGAA
GCAAAGGAAACCAAATAGATTAGCTAATGTTAAGCGTTTTTTAAGCTGAG
GCAACAACATTCACTACCCACAAACATAGCAACTGCACACACAGACGTCG
AAAATAAACCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

LD05882.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-3p40-RA 1790 eIF-3p40-RA 474..1589 1..1116 5580 100 Plus
eIF-3p40-RB 1790 eIF-3p40-RB 474..1589 1..1116 5580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5050736..5051415 761..82 3400 100 Minus
chr2L 23010047 chr2L 5050317..5050671 1114..760 1775 100 Minus
chr2L 23010047 chr2L 5051754..5051836 83..1 415 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5051636..5052315 761..82 3400 100 Minus
2L 23513712 2L 5051215..5051571 1116..760 1785 100 Minus
2L 23513712 2L 5052654..5052736 83..1 415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5051636..5052315 761..82 3400 100 Minus
2L 23513712 2L 5051215..5051571 1116..760 1785 100 Minus
2L 23513712 2L 5052654..5052736 83..1 415 100 Minus
Blast to na_te.dros performed 2019-03-15 23:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 8315..8386 633..702 121 67.1 Plus

LD05882.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:19:01 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5050317..5050670 761..1114 100 <- Minus
chr2L 5050737..5051414 83..760 100 <- Minus
chr2L 5051755..5051836 1..82 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:06:50 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p40-RB 1..1017 2..1018 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:38:13 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p40-RB 1..1017 2..1018 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:20 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p40-RA 1..1017 2..1018 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:24 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p40-RA 1..1017 2..1018 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-02 14:13:05 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p40-RB 474..1587 1..1114 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:38:13 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p40-RB 57..1170 1..1114 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:20 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p40-RA 359..1472 1..1114 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:24 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-3p40-RA 359..1472 1..1114 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:01 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5051217..5051570 761..1114 100 <- Minus
2L 5051637..5052314 83..760 100 <- Minus
2L 5052655..5052736 1..82 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:01 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5051217..5051570 761..1114 100 <- Minus
2L 5051637..5052314 83..760 100 <- Minus
2L 5052655..5052736 1..82 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:01 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5051217..5051570 761..1114 100 <- Minus
2L 5051637..5052314 83..760 100 <- Minus
2L 5052655..5052736 1..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:20 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5051217..5051570 761..1114 100 <- Minus
arm_2L 5051637..5052314 83..760 100 <- Minus
arm_2L 5052655..5052736 1..82 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:12:09 Download gff for LD05882.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5051217..5051570 761..1114 100 <- Minus
2L 5051637..5052314 83..760 100 <- Minus
2L 5052655..5052736 1..82 100   Minus

LD05882.hyp Sequence

Translation from 0 to 1017

> LD05882.hyp
MANRANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGAL
LGLVVDKCLEITNCFPFPKSGDETMDEEMYQLTVMRRLRRVNVDHLHVGW
YQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRL
TPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELN
ELLPEDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFK
QDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQFRPMTAPNRLTATIT
SGQINTHAQHIAQFCSQSLAKLFITESLQIAKEAKETK*

LD05882.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-3p40-PB 338 CG9124-PB 1..338 1..338 1736 100 Plus
eIF-3p40-PA 338 CG9124-PA 1..338 1..338 1736 100 Plus

LD05882.pep Sequence

Translation from 1 to 1017

> LD05882.pep
MANRANRHAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGAL
LGLVVDKCLEITNCFPFPKSGDETMDEEMYQLTVMRRLRRVNVDHLHVGW
YQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRL
TPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELN
ELLPEDKGHNFLDLGTATVLENQMRSLIERVDELYQEAVRYNKYQQVVFK
QDTEKHRALAKLAAENAVRTSKGEPTVPEEEVIKQFRPMTAPNRLTATIT
SGQINTHAQHIAQFCSQSLAKLFITESLQIAKEAKETK*

LD05882.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14158-PA 337 GF14158-PA 1..337 1..338 1753 96.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24322-PA 338 GG24322-PA 1..338 1..338 1814 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10269-PA 337 GH10269-PA 1..337 1..338 1715 93.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
eIF3h-PB 338 CG9124-PB 1..338 1..338 1736 100 Plus
eIF3h-PA 338 CG9124-PA 1..338 1..338 1736 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15660-PA 337 GI15660-PA 1..337 1..338 1741 95.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26477-PA 256 GL26477-PA 1..171 1..172 926 97.1 Plus
Dper\GL26477-PA 256 GL26477-PA 167..256 249..338 389 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28878-PA 337 GA28878-PA 1..337 1..338 1729 94.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18040-PA 338 GM18040-PA 1..338 1..338 1827 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14929-PA 298 GD14929-PA 1..296 43..338 1590 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10133-PA 337 GJ10133-PA 1..337 1..338 1751 96.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24148-PA 337 GK24148-PA 1..337 1..338 1723 94.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18701-PA 338 GE18701-PA 1..338 1..338 1810 98.8 Plus