Clone LD05920 Report

Search the DGRC for LD05920

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:59
Well:20
Vector:pBS SK-
Associated Gene/TranscriptCG7280-RA
Protein status:LD05920.pep: gold
Preliminary Size:2156
Sequenced Size:2125

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7280 2001-01-01 Release 2 assignment
CG7280 2001-11-09 Blastp of sequenced clone
CG7280 2003-01-01 Sim4 clustering to Release 3
CG7280 2008-04-29 Release 5.5 accounting
CG7280 2008-08-15 Release 5.9 accounting
CG7280 2008-12-18 5.12 accounting

Clone Sequence Records

LD05920.complete Sequence

2125 bp (2125 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069352

> LD05920.complete
TTGTCGAGGAGCGGCTGGTAAACAGCCGAATTAGCGCTCCCAAGATTGCT
TATCAATTAAACCAACGCCGATTGGGGGCCAGAGGCTGCTGGGGCCAATG
ACGCCACTGGACAAACCACAAGACATATCACTTAGGAGGCCACATAAATC
AGCAGCGAAACAGATTCACCGGAGCGGCAAGAAGCAGAGCGGGGAAGCTT
GAGATTGGTTTGGATTTCTTTCGAAACGAATCGACTGATTTACCGGTGAT
CAGTTACATAACAATGCGCTTGCTCAGGCCCAGCTGGGCGGGGTTGCTGC
GCGGAAGGCACCACCAGCACCAGCGACATCACCGGCGTCTCCTGCTGACC
ACCAGTCGCGGTAGCAATGGAGAAAGGGAGGAGCAGCAGCACAGCCAATG
GAGTTCTCCCGGCAGCAGGTCGGAGCAACTGTTCTATGCTGCCTTTTGGG
CAGGTGGCCTGACCCTAGGCTACCACTGGCTGACCGACAAGAAGAACCAT
GTGCTGCTCGAGGGACAGAAGGTGGCCAGCGAGGAGGAACTAGAGGCAAC
GGCCCGACTGTGGCACGTGACCAACAGAAGGGAGTTGCCCACCTACAGGG
CAGAAGAAGTGGAGCAGCACAACAGCGTAGAGAAACGCATTTGGGTCACC
TACGGCCTGGGCGTATACGATGTCACGGACTTTGTCGAGAATCATCCCGG
TGGCGATAAGATCTTGATGGCCGCCGGCAGTGCCATCGATCCCTTTTGGG
GCATCTACCAGCAGCACAATACGCTGGAGGTTCTGGAGCTCCTAGAGGGC
TTTCGCATTGGCAATCTGGAGGGACTGGTGGTGACCAACGTGGACGATGA
GCTGGGCTCACCCTGGTCACAGGAGCCGCAGCGCCACGCCCTGCTCAAGC
CAGCCTCCAAGAGACCATTCAACGCTGAGCCACCCATTGGATTGCTGGCC
GAGCAGTTTTACACGCCCAACGAGCTATTCTATGTGCGCAACCACCTGCC
AGTGCCAGTGATAAATCCGGAGGATTACGAGCTGGAAATCGAAGGTGGCG
CCAAGGACAAGACCCTCACTCTGGACGGGATCAAGGCCCTGCCCAAGCAC
TCGGTCACGGCGGCCATCATGTGCGGTGGCAATCGACGCTCTGAGATGAC
CAAAGTCAAGGCCGTAAAGGGTCTTTCATGGGGAGCTGGTGCAGTGGGCA
ATGCCAAGTGGTCAGGAGCTCGACTGTGCGACATTCTAAGAGAGCAGGGC
GTGCAGCCGGATGAGACCAAGCACGTGATCTTCGAGGGTGCCGACCTGGA
TCCCACTTCCCACCCGTATGGAGCATCGATACCACTCGCCAAGGCGCTCG
ATCCCAGGGGAGATGTCATCCTGGCCTACGAGATGAACGATGAGCCGCTG
AGCAGAGACCATGGCTTCCCCATCCGCGTAATTGTTCCCGGCACAGTGGG
CGCTCGCAACGTGAAGTGGCTAACGCGAATCGTGGTGGCGGACAAGGAAT
CGGACTCGCACTGGCAGCAGAACGACTATAAGGGCTTTAGCCCTAGCACC
GATTGGGACACGGTAGACTTCAGCAAATCGGATGCCATCCAGGCCATGCC
GGTGACATCGGCCATCTGTACGCCACAGCCAGGGGCCAGGGTGAAAGTGG
ACGACGACGAGGGTCACATCACGGTTAGGGGATACGCGTGGAGCGGCGGC
GGCAGGAAAATCGTAAGGGTGGACCTAACCAACGATGAGGGTGTTAGCTG
GCACGTGGCCGAACTGGAGCAGGAGGAGATGCCCGATGGCAGACACTACG
GCTGGTCCCTGTGGACCGCACGTCTGCCCGTTTCCGAGGCCCAAAGGAGA
GCCGGCGACGTGGAGATTTGGGCCAAGGCCGTTGACTCGGCGTACAATGT
GCAGCCGGAGAAATTCGAGCACATCTGGAATCTGCGTGGCGTCTTGGCCA
ACGCGTATCACAAAGTCAAAGTGAAGATTATCTGAAGGGGAGATTTCTGG
CAATACTCAAGATAGAAGGAGACATAGATAGAAACTAAGAAGACAGCTTG
TCCACAACAAAATAAAGAAAAACCGATTTTGGAAATCAGTGGTTAACCCC
AAAAAAAAAAAAAAAAAAAAAAAAA

LD05920.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7280-RA 2165 CG7280-RA 59..2162 1..2104 10520 100 Plus
CG34422-RB 2068 CG34422-RB 2018..2068 2104..2054 255 100 Minus
CG34422.a 2316 CG34422.a 2266..2316 2104..2054 255 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18736538..18737709 1172..1 5785 99.6 Minus
chrX 22417052 chrX 18735547..18736477 2100..1170 4610 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18847380..18848551 1172..1 5860 100 Minus
X 23542271 X 18846385..18847319 2104..1170 4675 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18855478..18856649 1172..1 5860 100 Minus
X 23527363 X 18854483..18855417 2104..1170 4675 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:21:33 has no hits.

LD05920.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:22:22 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18735547..18736476 1171..2100 99 <- Minus
chrX 18736540..18737709 1..1170 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:45 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 1..1722 264..1985 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:31 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 1..1722 264..1985 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:18 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 1..1722 264..1985 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:08 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 1..1722 264..1985 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:29 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 1..1722 264..1985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:30 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 1..2100 1..2100 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:31 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 1..2100 1..2100 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:18 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 16..2115 1..2100 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:09 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 1..2100 1..2100 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:29 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
CG7280-RA 16..2115 1..2100 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:22 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
X 18846389..18847318 1171..2100 100 <- Minus
X 18847382..18848551 1..1170 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:22 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
X 18846389..18847318 1171..2100 100 <- Minus
X 18847382..18848551 1..1170 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:22 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
X 18846389..18847318 1171..2100 100 <- Minus
X 18847382..18848551 1..1170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:18 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18740422..18741351 1171..2100 100 <- Minus
arm_X 18741415..18742584 1..1170 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:31 Download gff for LD05920.complete
Subject Subject Range Query Range Percent Splice Strand
X 18854487..18855416 1171..2100 100 <- Minus
X 18855480..18856649 1..1170 100   Minus

LD05920.hyp Sequence

Translation from 263 to 1984

> LD05920.hyp
MRLLRPSWAGLLRGRHHQHQRHHRRLLLTTSRGSNGEREEQQHSQWSSPG
SRSEQLFYAAFWAGGLTLGYHWLTDKKNHVLLEGQKVASEEELEATARLW
HVTNRRELPTYRAEEVEQHNSVEKRIWVTYGLGVYDVTDFVENHPGGDKI
LMAAGSAIDPFWGIYQQHNTLEVLELLEGFRIGNLEGLVVTNVDDELGSP
WSQEPQRHALLKPASKRPFNAEPPIGLLAEQFYTPNELFYVRNHLPVPVI
NPEDYELEIEGGAKDKTLTLDGIKALPKHSVTAAIMCGGNRRSEMTKVKA
VKGLSWGAGAVGNAKWSGARLCDILREQGVQPDETKHVIFEGADLDPTSH
PYGASIPLAKALDPRGDVILAYEMNDEPLSRDHGFPIRVIVPGTVGARNV
KWLTRIVVADKESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSA
ICTPQPGARVKVDDDEGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAE
LEQEEMPDGRHYGWSLWTARLPVSEAQRRAGDVEIWAKAVDSAYNVQPEK
FEHIWNLRGVLANAYHKVKVKII*

LD05920.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7280-PA 573 CG7280-PA 1..573 1..573 3075 100 Plus

LD05920.pep Sequence

Translation from 263 to 1984

> LD05920.pep
MRLLRPSWAGLLRGRHHQHQRHHRRLLLTTSRGSNGEREEQQHSQWSSPG
SRSEQLFYAAFWAGGLTLGYHWLTDKKNHVLLEGQKVASEEELEATARLW
HVTNRRELPTYRAEEVEQHNSVEKRIWVTYGLGVYDVTDFVENHPGGDKI
LMAAGSAIDPFWGIYQQHNTLEVLELLEGFRIGNLEGLVVTNVDDELGSP
WSQEPQRHALLKPASKRPFNAEPPIGLLAEQFYTPNELFYVRNHLPVPVI
NPEDYELEIEGGAKDKTLTLDGIKALPKHSVTAAIMCGGNRRSEMTKVKA
VKGLSWGAGAVGNAKWSGARLCDILREQGVQPDETKHVIFEGADLDPTSH
PYGASIPLAKALDPRGDVILAYEMNDEPLSRDHGFPIRVIVPGTVGARNV
KWLTRIVVADKESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSA
ICTPQPGARVKVDDDEGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAE
LEQEEMPDGRHYGWSLWTARLPVSEAQRRAGDVEIWAKAVDSAYNVQPEK
FEHIWNLRGVLANAYHKVKVKII*

LD05920.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19247-PA 574 GF19247-PA 1..574 1..573 2431 79.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18090-PA 571 GG18090-PA 1..571 1..573 2811 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17659-PA 592 GH17659-PA 26..590 25..572 2089 69.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Suox-PA 573 CG7280-PA 1..573 1..573 3075 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21511-PA 573 GI21511-PA 63..573 70..573 2024 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21319-PA 524 GL21319-PA 75..523 135..572 2006 83.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20233-PA 584 GA20233-PA 14..583 11..572 2349 76.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22781-PA 371 GM22781-PA 1..351 1..354 1692 91 Plus
Dsec\GM10077-PA 200 GM10077-PA 1..200 374..573 1057 99 Plus
Dsec\GM22782-PA 110 GM22782-PA 12..110 475..573 516 98 Plus
Dsec\GM18721-PA 70 GM18721-PA 1..70 504..573 364 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15611-PA 903 GD15611-PA 1..568 1..568 2970 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19049-PA 578 GJ19049-PA 21..578 24..573 2078 72.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20089-PA 564 GK20089-PA 34..561 43..572 2051 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15486-PA 571 GE15486-PA 1..571 1..573 2808 93.2 Plus