Clone LD05963 Report

Search the DGRC for LD05963

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:59
Well:63
Vector:pBS SK-
Associated Gene/TranscriptUvrag-RA
Protein status:LD05963.pep: gold
Preliminary Size:2296
Sequenced Size:2506

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6116 2001-01-01 Release 2 assignment
CG6116 2001-11-09 Blastp of sequenced clone
CG6116 2003-01-01 Sim4 clustering to Release 3
CG6116 2008-04-29 Release 5.5 accounting
CG6116 2008-08-15 Release 5.9 accounting
CG6116 2008-12-18 5.12 accounting

Clone Sequence Records

LD05963.complete Sequence

2506 bp (2506 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069353

> LD05963.complete
GTTCGGGTAATCATTTTTTTTGTTAAAAGTTTCTGTGGAAAAACTATAAC
AAACGTAGTCTTAGTGTACAATGATCTGGGCTACGGGCTCCGCGTAATCC
GCAGCTCACCCGGAAAGGCGTTTTACGATGAATCTACGGCCGCGATGCCG
CAAGTGGCTGCCCCTAGCCACCCAGCAACTTCGACTGCGGAACCTTAACA
GAATTCAGGGATTCAATATTGAGTCCTGGCCGCATGAGAAGTCGCTGGAG
CTAGATGATCCGGATGATGTGCTCCTCTACTACACACTACACACGGACAA
GGCTAGCGAAGCGTTCTACACCAGCGAAAAGCTGCCGCAGCGTCACCAAC
AGCAAAAGTGGGCGGAGATTTGTACGGACGACGAGGCCTGGCGGAAAACC
AATGCGCAGTGTGTCTGTGTCAAGGTGTGGAAGCACTATTCGGCGGAAAG
AAGAGATGGCCAACCGCCTGAGGTTGAGCAAAGACATAAGGATGTTTTCG
GAAGATCCCAGTTAACGCCCAGCAGGCTGCCACGCCCTCCTGAACTACTG
TTCAGCTGGGGCGTCTACTTCTCCGGCCTTATACCTCTGTCTCCCCTCAC
ATTGTCCCAGTGCGGACGAAATTGCTTGGTCTTTCAATTGAATGGCGAGC
AATTTGCCTCCCCGTCGATGATAAGCGAGCAGGCCTTGCAGTCGCAGCTG
CATTTGCACTACCAAAAGTATGCGGAGGAAGAGAAACTAGAAGAGCCGCA
GGATGAGGGCATAAACTCGCCGGCCGTTAGTCGTAGTTCGAGTCCCGTGC
TGCGAATGAGTACGATGCGCTATGCACAGCTGAAGTGCCAACGGCAGGAG
ATTCGGCGAAGCAACAACCTCGAAAAGCTTCTCACGTTGCAACGTCTGCA
ACGCTTGCATCAGCAGAAGCGGCGTCAAATGGCCGAGGTTTGCCGAGAAA
TAGCCCGCCTCAGTGTACACTGTGTGACCAGGAACGAGCTGCGCTTGAAG
CCCCGCACGACATCGCTGTCCGGCGACTACTCCGCCCATCAGTACCATTC
CATGGGCCGCGCCCTGAGCGTGTTGCTCGCCGAGCAGCAGCAGATCGCGC
CCCTCACGCTTTATAATGCCCAGCAGCTAACTAGAAGGATAGAAGCGCTA
AGCAGTCAACAGCGGCTACTTAAAGCGGAGCGGGAAACGTTTCGCCAACG
AAACGAGCGCACCCGTCAACTTCTGAAGGAGATGAGAGAACAGCGGGAGG
CACAGCAATGGGAGCTCCACAGCCAGCGACATCGACTGGAAAAAGAACGT
CTGGAGCTACGAACCCTGGCACCTCAACATCTGGAACAGCGCGATCAAAA
AAGACAAATAGAACGGCAGGTGGAGCGCCGAATGTCCACACTGGTGTTGG
AGCTACAGGAGATCTATAACATCCAGAATGTGGGCGGTCGGCAATTTAGT
ATCTGCGGCATCGCCTTCCCCCACATGGAGCAATACACGAGCGAGTCACG
TCAGGCGGCAAACGCACAGCTTCTGGATAACGTCTCGCCGCTGGCAGTGA
GTGCGGCACTGGGTTATGTTGCCCATTTGGTGCAGATGTTAGCCATCATT
ATGGATCGACCTCTGAGGAACCGTATTCTGTACGAGCCATCGAAAGCAAG
GATAGTGGACGATATCAAAGAGTTGACGTACACAACAAGAGAATTTCCTC
TGTATACACGCTCCATTTTGCCGTCGCAGCAAACAAAGTATGCCATCTAC
CTTTTGCGCCAGAATGTTTCGCAGCTGTGCTTCGACATCACGGGCCAGTG
CGATCTGCGAAACACTTTTGGCAATCTGCTGGAGCTATTCAGCACTCTTC
GCTACATCGAACGAACGCAAAGGGATGAGGTCGACGAACGGGATGGAACT
GCAGTTGGAGCTGGCTGTGGAGAAGCACGCTTGGCAAATGGGTTGACGGC
GCCGCACCTGTCGCAATCGCACTCTTCGGTCGACATGAATCATGTGCCAC
TGCCGACTGGCGTCAATGCGGTCAAGGATGCACTGCTCCAGCAGCTGTTG
CCGCCGGGTGTGAGTGAGGCACTGGCAATCGAAGGCTATGCGTCAACTCA
ACGCATTTGCCGTTCGGTGGGGTCCTATTCAGATGGCGAGGATGAGTTTC
GCCCGCGACTGGAGCATAACTATTCCAATTCGGACTCCAACATAACTCTG
CAAACTGAGCGCAGCTGAGCTAATGCACCCAAAAGTGTTATATTTCCAGC
GTTTATATCCAATATCCAAGATAGCATTGTTTAGCGGCTCCTCCTCAGCG
GGTTTCTTGGTATTGGCCGCGTATTGTATACTTTTAAATTATAAAAGTCA
ATGGTGAAGTATATGTGAACGGTAGTCCATTGCGATAATATTATTTTTAG
TTGTTTAAGATCTCTGTGTAAATTCCCTTTTATTGTTTGTTTGCTAATAT
AAGCTACGAATAAAGATTAAATATTTTATACATGAAAAAAAAAAAAAAAA
AAAAAA

LD05963.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6116-RA 2664 CG6116-RA 96..2584 1..2489 12430 99.9 Plus
CG6116.a 2661 CG6116.a 96..2581 1..2489 12360 99.8 Plus
CG6116.b 2500 CG6116.b 69..2500 58..2489 12145 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13286042..13286914 501..1373 4365 100 Plus
chr2L 23010047 chr2L 13285482..13285982 1..501 2475 99.6 Plus
chr2L 23010047 chr2L 13287349..13287759 1693..2103 2055 100 Plus
chr2L 23010047 chr2L 13287844..13288225 2103..2484 1895 99.7 Plus
chr2L 23010047 chr2L 13286972..13287296 1368..1692 1625 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13287373..13288245 501..1373 4365 100 Plus
2L 23513712 2L 13286813..13287313 1..501 2505 100 Plus
2L 23513712 2L 13288680..13289090 1693..2103 2055 100 Plus
2L 23513712 2L 13289175..13289561 2103..2489 1920 99.7 Plus
2L 23513712 2L 13288303..13288627 1368..1692 1625 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13287373..13288245 501..1373 4365 100 Plus
2L 23513712 2L 13286813..13287313 1..501 2505 100 Plus
2L 23513712 2L 13288680..13289090 1693..2103 2055 100 Plus
2L 23513712 2L 13289175..13289561 2103..2489 1920 99.7 Plus
2L 23513712 2L 13288303..13288627 1368..1692 1625 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:13:47 has no hits.

LD05963.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:14:29 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13285482..13285982 1..501 99 -> Plus
chr2L 13286043..13286910 502..1369 100 -> Plus
chr2L 13286974..13287296 1370..1692 100 -> Plus
chr2L 13287349..13287759 1693..2103 100 -> Plus
chr2L 13287845..13288225 2104..2484 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:46 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6116-RA 1..2091 128..2218 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:10 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6116-RA 1..2091 128..2218 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:38 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 1..2091 128..2218 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:45 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6116-RA 1..2091 128..2218 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:02 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 1..2091 128..2218 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:36 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6116-RA 24..2507 1..2484 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:10 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6116-RA 24..2507 1..2484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:38 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 37..2520 1..2484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:46 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
CG6116-RA 24..2507 1..2484 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:02 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 37..2520 1..2484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:29 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13286813..13287313 1..501 100 -> Plus
2L 13287374..13288241 502..1369 100 -> Plus
2L 13288305..13288627 1370..1692 100 -> Plus
2L 13288680..13289090 1693..2103 100 -> Plus
2L 13289176..13289556 2104..2484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:29 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13286813..13287313 1..501 100 -> Plus
2L 13287374..13288241 502..1369 100 -> Plus
2L 13288305..13288627 1370..1692 100 -> Plus
2L 13288680..13289090 1693..2103 100 -> Plus
2L 13289176..13289556 2104..2484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:29 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13286813..13287313 1..501 100 -> Plus
2L 13287374..13288241 502..1369 100 -> Plus
2L 13288305..13288627 1370..1692 100 -> Plus
2L 13288680..13289090 1693..2103 100 -> Plus
2L 13289176..13289556 2104..2484 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:38 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13286813..13287313 1..501 100 -> Plus
arm_2L 13287374..13288241 502..1369 100 -> Plus
arm_2L 13288305..13288627 1370..1692 100 -> Plus
arm_2L 13288680..13289090 1693..2103 100 -> Plus
arm_2L 13289176..13289556 2104..2484 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:32:58 Download gff for LD05963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13286813..13287313 1..501 100 -> Plus
2L 13287374..13288241 502..1369 100 -> Plus
2L 13288305..13288627 1370..1692 100 -> Plus
2L 13288680..13289090 1693..2103 100 -> Plus
2L 13289176..13289556 2104..2484 100   Plus

LD05963.pep Sequence

Translation from 127 to 2217

> LD05963.pep
MNLRPRCRKWLPLATQQLRLRNLNRIQGFNIESWPHEKSLELDDPDDVLL
YYTLHTDKASEAFYTSEKLPQRHQQQKWAEICTDDEAWRKTNAQCVCVKV
WKHYSAERRDGQPPEVEQRHKDVFGRSQLTPSRLPRPPELLFSWGVYFSG
LIPLSPLTLSQCGRNCLVFQLNGEQFASPSMISEQALQSQLHLHYQKYAE
EEKLEEPQDEGINSPAVSRSSSPVLRMSTMRYAQLKCQRQEIRRSNNLEK
LLTLQRLQRLHQQKRRQMAEVCREIARLSVHCVTRNELRLKPRTTSLSGD
YSAHQYHSMGRALSVLLAEQQQIAPLTLYNAQQLTRRIEALSSQQRLLKA
ERETFRQRNERTRQLLKEMREQREAQQWELHSQRHRLEKERLELRTLAPQ
HLEQRDQKRQIERQVERRMSTLVLELQEIYNIQNVGGRQFSICGIAFPHM
EQYTSESRQAANAQLLDNVSPLAVSAALGYVAHLVQMLAIIMDRPLRNRI
LYEPSKARIVDDIKELTYTTREFPLYTRSILPSQQTKYAIYLLRQNVSQL
CFDITGQCDLRNTFGNLLELFSTLRYIERTQRDEVDERDGTAVGAGCGEA
RLANGLTAPHLSQSHSSVDMNHVPLPTGVNAVKDALLQQLLPPGVSEALA
IEGYASTQRICRSVGSYSDGEDEFRPRLEHNYSNSDSNITLQTERS*

LD05963.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23109-PA 690 GF23109-PA 1..690 1..696 2957 82.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23835-PA 692 GG23835-PA 1..692 1..696 3376 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25098-PA 721 GH25098-PA 1..720 1..695 2237 64.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Uvrag-PA 696 CG6116-PA 1..696 1..696 3597 100 Plus
Uvrag-PB 695 CG6116-PB 1..695 1..696 3580 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17207-PA 712 GI17207-PA 1..711 1..695 2510 69.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26177-PA 672 GL26177-PA 1..672 1..696 2559 74.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19364-PA 691 GA19364-PA 1..691 1..696 2714 77.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10377-PA 696 GM10377-PA 1..696 1..696 3608 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23884-PA 696 GD23884-PA 1..696 1..696 3604 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17965-PA 712 GJ17965-PA 1..711 1..695 2429 69 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14834-PA 707 GK14834-PA 1..707 1..696 2313 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18639-PA 696 GE18639-PA 1..696 1..696 3439 95.8 Plus

LD05963.hyp Sequence

Translation from 127 to 2217

> LD05963.hyp
MNLRPRCRKWLPLATQQLRLRNLNRIQGFNIESWPHEKSLELDDPDDVLL
YYTLHTDKASEAFYTSEKLPQRHQQQKWAEICTDDEAWRKTNAQCVCVKV
WKHYSAERRDGQPPEVEQRHKDVFGRSQLTPSRLPRPPELLFSWGVYFSG
LIPLSPLTLSQCGRNCLVFQLNGEQFASPSMISEQALQSQLHLHYQKYAE
EEKLEEPQDEGINSPAVSRSSSPVLRMSTMRYAQLKCQRQEIRRSNNLEK
LLTLQRLQRLHQQKRRQMAEVCREIARLSVHCVTRNELRLKPRTTSLSGD
YSAHQYHSMGRALSVLLAEQQQIAPLTLYNAQQLTRRIEALSSQQRLLKA
ERETFRQRNERTRQLLKEMREQREAQQWELHSQRHRLEKERLELRTLAPQ
HLEQRDQKRQIERQVERRMSTLVLELQEIYNIQNVGGRQFSICGIAFPHM
EQYTSESRQAANAQLLDNVSPLAVSAALGYVAHLVQMLAIIMDRPLRNRI
LYEPSKARIVDDIKELTYTTREFPLYTRSILPSQQTKYAIYLLRQNVSQL
CFDITGQCDLRNTFGNLLELFSTLRYIERTQRDEVDERDGTAVGAGCGEA
RLANGLTAPHLSQSHSSVDMNHVPLPTGVNAVKDALLQQLLPPGVSEALA
IEGYASTQRICRSVGSYSDGEDEFRPRLEHNYSNSDSNITLQTERS*

LD05963.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Uvrag-PA 696 CG6116-PA 1..696 1..696 3597 100 Plus
Uvrag-PB 695 CG6116-PB 1..695 1..696 3580 99.9 Plus