LD06095.complete Sequence
1776 bp (1776 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069356
> LD06095.complete
TCACACTAAGCTCACGCAACGGACGGACAAATAAACATAAATAACGACAT
CTGAGTATTCTATAAATAATACGGGCAACTAGCGCTTCCTAGTCCAATTA
AAGCGGCTTAAAAAATTAGTGCTGAAGAATTAACGGTTACATAAATGAAA
GTTGCGTGTGCAAAACGCCTTTCGCTTTATTTGCTGATGCTGCCAAATCC
GTAAACCTGTTTTGGATGCCCATGAACTCATCAACAGCCACCTTGTGACG
TCCAAAACAACAAGTATTAATCATAGATAATTAGACGGCGGAAAAATGGT
TACGGCCACGGCGATTGCGGATCTGTGCATCTTCCTTTTGACCTGGAACG
TGGGCACCCATACGCCGCGAAATCAGGATCTGAGCTCCCTTTTGTCCCTT
AATGGCACCACCACTTGTCCGGATAACCAGCTGCCCGATATCTATGTAAT
CGGATTCCAGGAGGTGAGCACCACACCGCAGGTGCTAAAAATCTTCAATG
ACGATCCGTGGGTGCTGAAGATCGCGGACTCTCTGAGCGATCACCAGTTC
GTAAAGGTGGACTCGAAGCAGCTGCAGGGAATTCTTATAACCATGTTCGC
ACAGCACAAGCACATCCCGCACATGAAAGAAATCGAGACAGAAGCCACGC
GCACGGGACTTGGAGGGCTGTGGGGCAACAAGGGTGCCGTAAGCATTCGA
CTTTCGCTCTACGGAACTGGCGTCGCATTCGTCTGCTCCCATCTGGCGGC
GCACGATGAGAAGCTGAAGGAGCGCATCGAAGACTATCACCAAATCGTGG
ACAATCACAAGTACAATGCGCAGGGATATCGCCGGATATTCGATCACGAC
TTTGTCTTTTGGTTTGGCGATCTTAACTTCCGTCTCTCCGGCGATATGTC
CGCTTGGGATGTCCGCACGGATGTGGAGAACCAGCGATACGCTGATCTGC
TCAAGCTCGACCAGTTGAATCTGCTCCGGGAGAAGGGAAACGCCTTCAGC
TTGCTGGAGGAGCAGCAGCCCAACTTTGCGCCCACTTTTAAGTTCGTGGA
AGGCACTAATGACTACAACTTGAAGCGGCGACCCGCCTGGTGCGATCGGA
TTTTGCATCGCGTGCAGAGCAACATTTATCCGGGCATTACCCTGAGTGCC
AACCAGCTGTCTTATCAGTCCCACATGGACTACACTCTCTCCGACCACAA
GCCCGTATCGGCGACATTCAACTACAAGGTCGAGGCTGCCAACCAGACCT
ACACCGACGAGGAGCTCCACGAAATGACGCACGGATCTGCCTCATCTCCG
GCGACGCCAAATGTTAGTCTATCCTTCGCATTTGTTGTTTTTGTAGCTGT
GTCCTATACTCAACTTTGATTTCGCTTCTTTTGTAGTTATTTATCGCTGA
ACTAGAGCAATGGTAGCGCCGTCATGACGTCACTTAGTTGTGAACTTTTA
AATCTCTTTGCATGCTTTTAGATTATATGCGTAGACGAGTTGTAGAGTAA
TTAAAAGACTTCCTTTCAGAAGGAACAAGAGAAACGAAAATAATATCAAG
TACAATGTGATGAAATCTCTGCTAATTTAGCAATCATTTAAGCAATTCTC
AAGTGATCCATGGAAATAATGCAGCTTCCGAGTATATATACATACATATG
TTATCACTCAATTAAGACGATATTAATTTAACGATTGATTGCATTAAACA
AATGTATTTTTGTACACTAAACTGTTGATCGAATAAAAAAAACTATTACC
TCTCGAAAAAAAAAAAAAAAAAAAAA
LD06095.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-RA | 1953 | CG6805-RA | 96..1851 | 1..1756 | 8780 | 100 | Plus |
CG6805.b | 1879 | CG6805.b | 96..1407 | 1..1312 | 6560 | 100 | Plus |
CG6805.a | 1664 | CG6805.a | 14..1325 | 1..1312 | 6560 | 100 | Plus |
CG6805.b | 1879 | CG6805.b | 1408..1777 | 1387..1756 | 1850 | 100 | Plus |
CG6805.a | 1664 | CG6805.a | 1326..1562 | 1520..1756 | 1185 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 12892685..12893726 | 1..1042 | 4970 | 98.5 | Plus |
chr2R | 21145070 | chr2R | 12894006..12894720 | 1041..1755 | 3575 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17005466..17006507 | 1..1042 | 5210 | 100 | Plus |
2R | 25286936 | 2R | 17006787..17007502 | 1041..1756 | 3580 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 17006665..17007706 | 1..1042 | 5210 | 100 | Plus |
2R | 25260384 | 2R | 17007986..17008701 | 1041..1756 | 3580 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 04:02:30 has no hits.
LD06095.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:03:23 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 12892685..12893726 | 1..1042 | 98 | -> | Plus |
chr2R | 12894008..12894720 | 1043..1755 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:56 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 1..1074 | 296..1369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:34 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 1..1074 | 296..1369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:48 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 1..1074 | 296..1369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:11 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 1..1074 | 296..1369 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:24:05 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 1..1074 | 296..1369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:33 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 14..1768 | 1..1755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:33 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 14..1768 | 1..1755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:48 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 16..1770 | 1..1755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:13 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 14..1768 | 1..1755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:24:05 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6805-RA | 16..1770 | 1..1755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:23 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17005466..17006507 | 1..1042 | 100 | -> | Plus |
2R | 17006789..17007501 | 1043..1755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:23 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17005466..17006507 | 1..1042 | 100 | -> | Plus |
2R | 17006789..17007501 | 1043..1755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:23 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17005466..17006507 | 1..1042 | 100 | -> | Plus |
2R | 17006789..17007501 | 1043..1755 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:48 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12892971..12894012 | 1..1042 | 100 | -> | Plus |
arm_2R | 12894294..12895006 | 1043..1755 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:34 Download gff for
LD06095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17006665..17007706 | 1..1042 | 100 | -> | Plus |
2R | 17007988..17008700 | 1043..1755 | 100 | | Plus |
LD06095.pep Sequence
Translation from 295 to 1368
> LD06095.pep
MVTATAIADLCIFLLTWNVGTHTPRNQDLSSLLSLNGTTTCPDNQLPDIY
VIGFQEVSTTPQVLKIFNDDPWVLKIADSLSDHQFVKVDSKQLQGILITM
FAQHKHIPHMKEIETEATRTGLGGLWGNKGAVSIRLSLYGTGVAFVCSHL
AAHDEKLKERIEDYHQIVDNHKYNAQGYRRIFDHDFVFWFGDLNFRLSGD
MSAWDVRTDVENQRYADLLKLDQLNLLREKGNAFSLLEEQQPNFAPTFKF
VEGTNDYNLKRRPAWCDRILHRVQSNIYPGITLSANQLSYQSHMDYTLSD
HKPVSATFNYKVEAANQTYTDEELHEMTHGSASSPATPNVSLSFAFVVFV
AVSYTQL*
LD06095.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-PA | 357 | CG6805-PA | 1..357 | 1..357 | 1889 | 100 | Plus |
CG6805-PB | 348 | CG6805-PB | 1..343 | 1..343 | 1808 | 98.8 | Plus |
CG9784-PB | 508 | CG9784-PB | 33..343 | 12..312 | 828 | 51.1 | Plus |
CG9784-PA | 508 | CG9784-PA | 33..343 | 12..312 | 828 | 51.1 | Plus |
CG9784-PC | 519 | CG9784-PC | 33..343 | 12..312 | 828 | 51.1 | Plus |
Synj-PC | 1218 | CG6562-PC | 577..870 | 31..317 | 388 | 31.4 | Plus |
Synj-PA | 1218 | CG6562-PA | 577..870 | 31..317 | 388 | 31.4 | Plus |
Synj-PB | 1218 | CG6562-PB | 577..870 | 31..317 | 388 | 31.4 | Plus |
Ocrl-PB | 850 | CG3573-PB | 184..485 | 9..317 | 377 | 32.8 | Plus |
Ocrl-PA | 850 | CG3573-PA | 184..485 | 9..317 | 377 | 32.8 | Plus |
INPP5E-PB | 747 | CG10426-PB | 390..708 | 9..314 | 291 | 28.3 | Plus |
INPP5E-PA | 747 | CG10426-PA | 390..708 | 9..314 | 291 | 28.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA19874-PA | 354 | GA19874-PA | 1..354 | 1..357 | 1616 | 83.2 | Plus |
Dpse\GA22035-PA | 507 | GA22035-PA | 36..343 | 12..312 | 837 | 50.6 | Plus |
Dpse\GA19686-PA | 1239 | GA19686-PA | 597..872 | 48..317 | 402 | 32.9 | Plus |
Dpse\GA17531-PA | 844 | GA17531-PA | 182..484 | 9..318 | 385 | 33 | Plus |
Dpse\GA10312-PA | 765 | GA10312-PA | 408..727 | 9..315 | 300 | 28.7 | Plus |
LD06095.hyp Sequence
Translation from 295 to 1368
> LD06095.hyp
MVTATAIADLCIFLLTWNVGTHTPRNQDLSSLLSLNGTTTCPDNQLPDIY
VIGFQEVSTTPQVLKIFNDDPWVLKIADSLSDHQFVKVDSKQLQGILITM
FAQHKHIPHMKEIETEATRTGLGGLWGNKGAVSIRLSLYGTGVAFVCSHL
AAHDEKLKERIEDYHQIVDNHKYNAQGYRRIFDHDFVFWFGDLNFRLSGD
MSAWDVRTDVENQRYADLLKLDQLNLLREKGNAFSLLEEQQPNFAPTFKF
VEGTNDYNLKRRPAWCDRILHRVQSNIYPGITLSANQLSYQSHMDYTLSD
HKPVSATFNYKVEAANQTYTDEELHEMTHGSASSPATPNVSLSFAFVVFV
AVSYTQL*
LD06095.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6805-PA | 357 | CG6805-PA | 1..357 | 1..357 | 1889 | 100 | Plus |
CG6805-PB | 348 | CG6805-PB | 1..343 | 1..343 | 1808 | 98.8 | Plus |
CG9784-PB | 508 | CG9784-PB | 33..343 | 12..312 | 828 | 51.1 | Plus |
CG9784-PA | 508 | CG9784-PA | 33..343 | 12..312 | 828 | 51.1 | Plus |
CG9784-PC | 519 | CG9784-PC | 33..343 | 12..312 | 828 | 51.1 | Plus |