Clone LD06095 Report

Search the DGRC for LD06095

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:60
Well:95
Vector:pBS SK-
Associated Gene/TranscriptCG6805-RA
Protein status:LD06095.pep: gold
Preliminary Size:1797
Sequenced Size:1776

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6805 2001-01-01 Release 2 assignment
CG6805 2001-11-09 Blastp of sequenced clone
CG6805 2003-01-01 Sim4 clustering to Release 3
CG6805 2008-04-29 Release 5.5 accounting
CG6805 2008-08-15 Release 5.9 accounting
CG6805 2008-12-18 5.12 accounting

Clone Sequence Records

LD06095.complete Sequence

1776 bp (1776 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069356

> LD06095.complete
TCACACTAAGCTCACGCAACGGACGGACAAATAAACATAAATAACGACAT
CTGAGTATTCTATAAATAATACGGGCAACTAGCGCTTCCTAGTCCAATTA
AAGCGGCTTAAAAAATTAGTGCTGAAGAATTAACGGTTACATAAATGAAA
GTTGCGTGTGCAAAACGCCTTTCGCTTTATTTGCTGATGCTGCCAAATCC
GTAAACCTGTTTTGGATGCCCATGAACTCATCAACAGCCACCTTGTGACG
TCCAAAACAACAAGTATTAATCATAGATAATTAGACGGCGGAAAAATGGT
TACGGCCACGGCGATTGCGGATCTGTGCATCTTCCTTTTGACCTGGAACG
TGGGCACCCATACGCCGCGAAATCAGGATCTGAGCTCCCTTTTGTCCCTT
AATGGCACCACCACTTGTCCGGATAACCAGCTGCCCGATATCTATGTAAT
CGGATTCCAGGAGGTGAGCACCACACCGCAGGTGCTAAAAATCTTCAATG
ACGATCCGTGGGTGCTGAAGATCGCGGACTCTCTGAGCGATCACCAGTTC
GTAAAGGTGGACTCGAAGCAGCTGCAGGGAATTCTTATAACCATGTTCGC
ACAGCACAAGCACATCCCGCACATGAAAGAAATCGAGACAGAAGCCACGC
GCACGGGACTTGGAGGGCTGTGGGGCAACAAGGGTGCCGTAAGCATTCGA
CTTTCGCTCTACGGAACTGGCGTCGCATTCGTCTGCTCCCATCTGGCGGC
GCACGATGAGAAGCTGAAGGAGCGCATCGAAGACTATCACCAAATCGTGG
ACAATCACAAGTACAATGCGCAGGGATATCGCCGGATATTCGATCACGAC
TTTGTCTTTTGGTTTGGCGATCTTAACTTCCGTCTCTCCGGCGATATGTC
CGCTTGGGATGTCCGCACGGATGTGGAGAACCAGCGATACGCTGATCTGC
TCAAGCTCGACCAGTTGAATCTGCTCCGGGAGAAGGGAAACGCCTTCAGC
TTGCTGGAGGAGCAGCAGCCCAACTTTGCGCCCACTTTTAAGTTCGTGGA
AGGCACTAATGACTACAACTTGAAGCGGCGACCCGCCTGGTGCGATCGGA
TTTTGCATCGCGTGCAGAGCAACATTTATCCGGGCATTACCCTGAGTGCC
AACCAGCTGTCTTATCAGTCCCACATGGACTACACTCTCTCCGACCACAA
GCCCGTATCGGCGACATTCAACTACAAGGTCGAGGCTGCCAACCAGACCT
ACACCGACGAGGAGCTCCACGAAATGACGCACGGATCTGCCTCATCTCCG
GCGACGCCAAATGTTAGTCTATCCTTCGCATTTGTTGTTTTTGTAGCTGT
GTCCTATACTCAACTTTGATTTCGCTTCTTTTGTAGTTATTTATCGCTGA
ACTAGAGCAATGGTAGCGCCGTCATGACGTCACTTAGTTGTGAACTTTTA
AATCTCTTTGCATGCTTTTAGATTATATGCGTAGACGAGTTGTAGAGTAA
TTAAAAGACTTCCTTTCAGAAGGAACAAGAGAAACGAAAATAATATCAAG
TACAATGTGATGAAATCTCTGCTAATTTAGCAATCATTTAAGCAATTCTC
AAGTGATCCATGGAAATAATGCAGCTTCCGAGTATATATACATACATATG
TTATCACTCAATTAAGACGATATTAATTTAACGATTGATTGCATTAAACA
AATGTATTTTTGTACACTAAACTGTTGATCGAATAAAAAAAACTATTACC
TCTCGAAAAAAAAAAAAAAAAAAAAA

LD06095.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-RA 1953 CG6805-RA 96..1851 1..1756 8780 100 Plus
CG6805.b 1879 CG6805.b 96..1407 1..1312 6560 100 Plus
CG6805.a 1664 CG6805.a 14..1325 1..1312 6560 100 Plus
CG6805.b 1879 CG6805.b 1408..1777 1387..1756 1850 100 Plus
CG6805.a 1664 CG6805.a 1326..1562 1520..1756 1185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12892685..12893726 1..1042 4970 98.5 Plus
chr2R 21145070 chr2R 12894006..12894720 1041..1755 3575 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17005466..17006507 1..1042 5210 100 Plus
2R 25286936 2R 17006787..17007502 1041..1756 3580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17006665..17007706 1..1042 5210 100 Plus
2R 25260384 2R 17007986..17008701 1041..1756 3580 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:02:30 has no hits.

LD06095.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:03:23 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12892685..12893726 1..1042 98 -> Plus
chr2R 12894008..12894720 1043..1755 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:37:56 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 1..1074 296..1369 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:34 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 1..1074 296..1369 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:48 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 1..1074 296..1369 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:11 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 1..1074 296..1369 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:24:05 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 1..1074 296..1369 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:33 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 14..1768 1..1755 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:33 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 14..1768 1..1755 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:48 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 16..1770 1..1755 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:13 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 14..1768 1..1755 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:24:05 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 16..1770 1..1755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:23 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17005466..17006507 1..1042 100 -> Plus
2R 17006789..17007501 1043..1755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:23 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17005466..17006507 1..1042 100 -> Plus
2R 17006789..17007501 1043..1755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:23 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17005466..17006507 1..1042 100 -> Plus
2R 17006789..17007501 1043..1755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:48 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12892971..12894012 1..1042 100 -> Plus
arm_2R 12894294..12895006 1043..1755 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:34 Download gff for LD06095.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17006665..17007706 1..1042 100 -> Plus
2R 17007988..17008700 1043..1755 100   Plus

LD06095.pep Sequence

Translation from 295 to 1368

> LD06095.pep
MVTATAIADLCIFLLTWNVGTHTPRNQDLSSLLSLNGTTTCPDNQLPDIY
VIGFQEVSTTPQVLKIFNDDPWVLKIADSLSDHQFVKVDSKQLQGILITM
FAQHKHIPHMKEIETEATRTGLGGLWGNKGAVSIRLSLYGTGVAFVCSHL
AAHDEKLKERIEDYHQIVDNHKYNAQGYRRIFDHDFVFWFGDLNFRLSGD
MSAWDVRTDVENQRYADLLKLDQLNLLREKGNAFSLLEEQQPNFAPTFKF
VEGTNDYNLKRRPAWCDRILHRVQSNIYPGITLSANQLSYQSHMDYTLSD
HKPVSATFNYKVEAANQTYTDEELHEMTHGSASSPATPNVSLSFAFVVFV
AVSYTQL*

LD06095.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-PA 357 CG6805-PA 1..357 1..357 1889 100 Plus
CG6805-PB 348 CG6805-PB 1..343 1..343 1808 98.8 Plus
CG9784-PB 508 CG9784-PB 33..343 12..312 828 51.1 Plus
CG9784-PA 508 CG9784-PA 33..343 12..312 828 51.1 Plus
CG9784-PC 519 CG9784-PC 33..343 12..312 828 51.1 Plus
Synj-PC 1218 CG6562-PC 577..870 31..317 388 31.4 Plus
Synj-PA 1218 CG6562-PA 577..870 31..317 388 31.4 Plus
Synj-PB 1218 CG6562-PB 577..870 31..317 388 31.4 Plus
Ocrl-PB 850 CG3573-PB 184..485 9..317 377 32.8 Plus
Ocrl-PA 850 CG3573-PA 184..485 9..317 377 32.8 Plus
INPP5E-PB 747 CG10426-PB 390..708 9..314 291 28.3 Plus
INPP5E-PA 747 CG10426-PA 390..708 9..314 291 28.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19874-PA 354 GA19874-PA 1..354 1..357 1616 83.2 Plus
Dpse\GA22035-PA 507 GA22035-PA 36..343 12..312 837 50.6 Plus
Dpse\GA19686-PA 1239 GA19686-PA 597..872 48..317 402 32.9 Plus
Dpse\GA17531-PA 844 GA17531-PA 182..484 9..318 385 33 Plus
Dpse\GA10312-PA 765 GA10312-PA 408..727 9..315 300 28.7 Plus

LD06095.hyp Sequence

Translation from 295 to 1368

> LD06095.hyp
MVTATAIADLCIFLLTWNVGTHTPRNQDLSSLLSLNGTTTCPDNQLPDIY
VIGFQEVSTTPQVLKIFNDDPWVLKIADSLSDHQFVKVDSKQLQGILITM
FAQHKHIPHMKEIETEATRTGLGGLWGNKGAVSIRLSLYGTGVAFVCSHL
AAHDEKLKERIEDYHQIVDNHKYNAQGYRRIFDHDFVFWFGDLNFRLSGD
MSAWDVRTDVENQRYADLLKLDQLNLLREKGNAFSLLEEQQPNFAPTFKF
VEGTNDYNLKRRPAWCDRILHRVQSNIYPGITLSANQLSYQSHMDYTLSD
HKPVSATFNYKVEAANQTYTDEELHEMTHGSASSPATPNVSLSFAFVVFV
AVSYTQL*

LD06095.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-PA 357 CG6805-PA 1..357 1..357 1889 100 Plus
CG6805-PB 348 CG6805-PB 1..343 1..343 1808 98.8 Plus
CG9784-PB 508 CG9784-PB 33..343 12..312 828 51.1 Plus
CG9784-PA 508 CG9784-PA 33..343 12..312 828 51.1 Plus
CG9784-PC 519 CG9784-PC 33..343 12..312 828 51.1 Plus