Clone LD06131 Report

Search the DGRC for LD06131

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:61
Well:31
Vector:pBS SK-
Associated Gene/Transcriptrho-RA
Protein status:LD06131.pep: gold
Preliminary Size:2596
Sequenced Size:2525

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1004 2001-01-01 Release 2 assignment
CG1004 2002-06-10 Blastp of sequenced clone
CG1004 2003-01-01 Sim4 clustering to Release 3
rho 2008-04-29 Release 5.5 accounting
rho 2008-08-15 Release 5.9 accounting
rho 2008-12-18 5.12 accounting

Clone Sequence Records

LD06131.complete Sequence

2525 bp (2525 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121641

> LD06131.complete
CGAGCGCGAGATCATCAAACTGAGAAAGTCGGACTGCGACTCGAAACTGA
AATTGAAACTGAAAGAAAGAAATATTCAAATTGTCGTGTGTGTGGGTGCA
AGCAGAGAATATATATCTCAAGAATATCTGAATACAAGCTCCTGGATTTA
CGAGCAGCAAAACTAAGTTACCAATGTGCGAGCCGAAAAAAGCGAGTGAA
AAACGTGCGAATATGCCAGCTAACTAAAGACATTTGGATTACAAGAAACC
CACGCATTTTGGATTATAAACATTGCGACAGGCAGAAAAACCTAAGAATT
TCTTCAACGGCGCCAGCATGGAGAACTTAACGCAGAATGTAAACGAAACC
AAGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGA
GCATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCT
CCAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGC
AGCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGC
CATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGT
ACGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATT
GAGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTT
CGGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGG
ACCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCC
AACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCAT
TCCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGG
CGGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTC
TTCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCT
GGCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAAC
TCGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTAC
ACCCAATACTTCGATGGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTA
CATTGCCCACCTGACGGGAGCCCTGGCAGGACTAACGATCGGCTTTCTGG
TGCTAAAGAACTTCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTA
GCGTTGGGCGTCTACTGTGCCTTCACCGTCTTCGCCATCGTTTTCAACCT
GATCAACACGGTGACCGCTCAGCTGATGGAGGAGCAGGGTGAGGTGATTA
CCCAGCATCTGTTGCACGACCTGGGAGTGTCCTAAGTTTGAGGTTCGGAG
TCGTCAGCATGCTCGCAGGGATTCGGAATCTGCTTGAGCTTCAGGAGAGA
TCGAGAGACAGAGAGTTGGTGGAAAAGAAAAGTTCACTCAACGATTTAGT
TCAAAACTAATTCGATATTCGTTTGGCTTTTGCTTTTCGTTAGCATTATC
TCGTTATCGTTACCGTTTGCAGTTAAACGTTTCAGTTCCGAAACATAGTA
CACAAACTCAAAAAAAAAAAAAACAAATCAAGAGAAATACACTGGACCAA
AAAGAAAGTGCGAGGAGTGAGGAGAACATAAACCGAAGCCGAAACGTGTA
AACAAATGTTGTGATAGAACCAAAGACTGAATTTATTTCGCGTGTAAAAA
CCAAGTAAAAATCAAGAGGAAAATCAAAGAGGAGAAACAGAACTAATCGC
CTCTCGCTATGATTTAAATGATTTATCCATGTTTTCAATTAATGGTTTGT
CTGTTTTCTTAAATTATGTATTTATTGGCCGCAATTACTACGAATGAATC
GAATCGAAGCATCAGCAAACTGTATCAAATTGTTTATACATCCATAAGCA
TAATGTGCTCCGAATTGTAGGATTTAGTGTTATAATTTATATATATTTAG
GTATAACTAGCCCTCCTAACAAATTGTTTCAAATTGTAAATACTATTAAG
TCGCACACTAGTCAAACAACAACAACAGCAACAGCAAAAACAACAAAAAA
AATATGGAAAACCACAGCAAAGAACCATTCAATTCAGATCAATTAAGCAA
ATCGAGTTAAATTAAATTAAATTATACTAAAGTCACTTAATGCGTTACAA
AATCGAGCATCGTAATCCCCTACACACACACACACACACACACACTCGAA
AGTATTACTAATTATATTTATTTATGGTAGGGCAGCGAGGGTTTATTAAT
TCGTCAATTGAGCGAACTATTTATTTATTTATTTATTTAATAATTTAGTG
AAATTCACACAAACAAGCACGAAAAAACAACAACAACACAAGAGAGAGAA
GAAACAAACCAATTCAACTGTAAAAATATCCAATTGAAAAATACACACGA
AAAGCCAAAGAAAATAAAAAATCAAAACATTTCAAGAATACAACAGTAAT
AACAAAATAAAAAAAAAAAAAAAAA

LD06131.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
rho-RA 2745 rho-RA 92..2599 1..2509 12505 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1466622..1468067 1071..2508 6600 97.8 Plus
chr3L 24539361 chr3L 1466063..1466482 652..1071 2055 99.3 Plus
chr3L 24539361 chr3L 1465039..1465397 295..653 1780 99.7 Plus
chr3L 24539361 chr3L 1463410..1463705 1..296 1465 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1467039..1468476 1071..2509 7145 99.9 Plus
3L 28110227 3L 1466488..1466907 652..1071 2100 100 Plus
3L 28110227 3L 1465464..1465822 295..653 1795 100 Plus
3L 28110227 3L 1463835..1464130 1..296 1480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1467039..1468476 1071..2509 7155 99.9 Plus
3L 28103327 3L 1466488..1466907 652..1071 2100 100 Plus
3L 28103327 3L 1465464..1465822 295..653 1795 100 Plus
3L 28103327 3L 1463835..1464130 1..296 1480 100 Plus
Blast to na_te.dros performed 2019-03-16 19:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 5025..5089 2356..2292 118 64.6 Minus

LD06131.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:02:18 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1463410..1463705 1..296 99 -> Plus
chr3L 1465041..1465397 297..653 99 -> Plus
chr3L 1466065..1466482 654..1071 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:38:02 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 1..1068 318..1385 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:09 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 1..1068 318..1385 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:12 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 1..1068 318..1385 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:06 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 1..1068 318..1385 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:09 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 1..1068 318..1385 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:43:51 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 44..2550 1..2508 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:09 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 44..2550 1..2508 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:12 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 25..2531 1..2508 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:07 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 44..2550 1..2508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:09 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
rho-RA 25..2531 1..2508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:18 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1465466..1465822 297..653 100 -> Plus
3L 1463835..1464130 1..296 100 -> Plus
3L 1466490..1466907 654..1071 100 -> Plus
3L 1467040..1468475 1072..2508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:18 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1465466..1465822 297..653 100 -> Plus
3L 1463835..1464130 1..296 100 -> Plus
3L 1466490..1466907 654..1071 100 -> Plus
3L 1467040..1468475 1072..2508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:02:18 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1465466..1465822 297..653 100 -> Plus
3L 1463835..1464130 1..296 100 -> Plus
3L 1466490..1466907 654..1071 100 -> Plus
3L 1467040..1468475 1072..2508 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:12 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1463835..1464130 1..296 100 -> Plus
arm_3L 1465466..1465822 297..653 100 -> Plus
arm_3L 1466490..1466907 654..1071 100 -> Plus
arm_3L 1467040..1468475 1072..2508 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:59 Download gff for LD06131.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1463835..1464130 1..296 100 -> Plus
3L 1465466..1465822 297..653 100 -> Plus
3L 1466490..1466907 654..1071 100 -> Plus
3L 1467040..1468475 1072..2508 99   Plus

LD06131.pep Sequence

Translation from 317 to 1384

> LD06131.pep
MENLTQNVNETKVDLGQEKEKEASQEEEHATAAKETIIDIPAACSSSSNS
SSYDTDCSTASSTCCTRQGEHIYMQREAIPATPLPESEDIGLLKYVHRQH
WPWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQV
WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAG
SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI
FVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVLKNFG
HREYEQLIWWLALGVYCAFTVFAIVFNLINTVTAQLMEEQGEVITQHLLH
DLGVS*

LD06131.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\rho-PA 365 GF24766-PA 1..365 1..355 1626 86.2 Plus
Dana\GF24760-PA 352 GF24760-PA 29..351 25..354 793 49 Plus
Dana\GF25034-PA 485 GF25034-PA 197..461 78..330 689 51.1 Plus
Dana\GF21300-PA 418 GF21300-PA 106..406 39..328 459 35.6 Plus
Dana\GF15679-PA 260 GF15679-PA 53..256 84..302 311 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14792-PA 353 GG14792-PA 1..353 1..355 1839 96.9 Plus
Dere\GG14787-PA 349 GG14787-PA 106..349 102..355 699 55.3 Plus
Dere\GG14598-PA 485 GG14598-PA 197..485 78..354 671 47 Plus
Dere\GG18433-PA 417 GG18433-PA 105..405 39..328 466 35.9 Plus
Dere\GG10271-PA 263 GG10271-PA 55..253 87..299 320 31.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16240-PA 436 GH16240-PA 94..436 53..355 1434 81.3 Plus
Dgri\GH16237-PA 321 GH16237-PA 76..319 102..354 745 57.8 Plus
Dgri\GH15206-PA 476 GH15206-PA 196..476 78..354 706 49 Plus
Dgri\GH24104-PA 420 GH24104-PA 108..408 39..328 459 35.6 Plus
Dgri\GH11182-PA 229 GH11182-PA 24..229 79..299 315 31.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
rho-PB 355 CG1004-PB 1..355 1..355 1850 100 Plus
rho-PA 355 CG1004-PA 1..355 1..355 1850 100 Plus
ru-PA 341 CG1214-PA 24..340 28..354 740 46.7 Plus
stet-PA 330 CG33166-PA 67..330 102..354 662 48.5 Plus
stet-PB 485 CG33166-PB 222..485 102..354 662 48.5 Plus
rho-4-PB 417 CG1697-PB 179..405 102..328 472 40.5 Plus
rho-4-PA 417 CG1697-PA 179..405 102..328 472 40.5 Plus
rho-6-PB 263 CG17212-PB 54..251 84..297 328 32.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16668-PA 398 GI16668-PA 31..398 23..355 1453 79.7 Plus
Dmoj\GI16724-PA 476 GI16724-PA 196..476 78..354 710 50.3 Plus
Dmoj\GI16665-PA 311 GI16665-PA 67..309 102..354 695 56.7 Plus
Dmoj\GI14374-PA 420 GI14374-PA 182..408 102..328 469 40.9 Plus
Dmoj\GI15831-PA 242 GI15831-PA 27..234 80..298 319 33.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22508-PA 342 GL22508-PA 20..342 35..355 1123 71.6 Plus
Dper\GL22503-PA 344 GL22503-PA 103..343 102..354 757 59.8 Plus
Dper\GL22587-PA 487 GL22587-PA 198..487 78..354 673 46.4 Plus
Dper\GL26733-PA 417 GL26733-PA 179..405 102..328 465 40.5 Plus
Dper\GL19515-PA 204 GL19515-PA 57..197 146..298 173 31.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\rho-PA 365 GA10027-PA 22..365 35..355 1479 87.5 Plus
Dpse\GA11431-PA 336 GA11431-PA 95..335 102..354 755 59.8 Plus
Dpse\GA17336-PA 487 GA17336-PA 198..487 78..354 664 45.8 Plus
Dpse\GA14244-PA 417 GA14244-PA 179..405 102..328 465 40.5 Plus
Dpse\GA14394-PA 252 GA14394-PA 65..245 102..298 273 32 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\ve-PA 364 GM14413-PA 10..364 1..355 1877 98.6 Plus
Dsec\GM14406-PA 344 GM14406-PA 13..344 17..355 702 45.4 Plus
Dsec\GM14213-PA 485 GM14213-PA 197..485 78..354 670 47.5 Plus
Dsec\GM13096-PA 417 GM13096-PA 105..405 39..328 470 36.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13619-PA 355 GD13619-PA 1..355 1..355 1867 98 Plus
Dsim\GD13615-PA 344 GD13615-PA 13..344 17..355 705 45.4 Plus
Dsim\GD13475-PA 485 GD13475-PA 197..485 78..354 671 47.5 Plus
Dsim\GD17034-PA 382 GD17034-PA 144..370 102..328 465 40.5 Plus
Dsim\GD22127-PA 267 GD22127-PA 58..257 84..299 322 31 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\rho-PA 401 GJ12920-PA 38..401 37..355 1472 79.4 Plus
Dvir\GJ12468-PA 476 GJ12468-PA 202..476 84..354 711 51.1 Plus
Dvir\GJ12917-PA 314 GJ12917-PA 70..312 102..354 698 57.5 Plus
Dvir\GJ10319-PA 246 GJ10319-PA 25..233 80..299 304 30.2 Plus
Dvir\GJ19413-PA 350 GJ19413-PA 182..299 102..215 164 31.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16984-PA 391 GK16984-PA 1..391 1..355 1557 79 Plus
Dwil\GK17206-PA 475 GK17206-PA 116..475 2..354 679 40.5 Plus
Dwil\GK16979-PA 315 GK16979-PA 74..314 102..354 664 55.9 Plus
Dwil\GK15930-PA 418 GK15930-PA 180..406 102..328 462 40.9 Plus
Dwil\GK14633-PA 257 GK14633-PA 65..249 98..298 293 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21154-PA 355 GE21154-PA 1..355 1..355 1833 96.3 Plus
Dyak\GE21150-PA 343 GE21150-PA 13..343 17..355 704 44.4 Plus
Dyak\GE20958-PA 485 GE20958-PA 197..485 78..354 670 47.5 Plus
Dyak\GE15951-PA 417 GE15951-PA 105..405 39..328 466 35.9 Plus
Dyak\GE12391-PA 263 GE12391-PA 72..249 102..295 295 33 Plus

LD06131.hyp Sequence

Translation from 317 to 1384

> LD06131.hyp
MENLTQNVNETKVDLGQEKEKEASQEEEHATAAKETIIDIPAACSSSSNS
SSYDTDCSTASSTCCTRQGEHIYMQREAIPATPLPESEDIGLLKYVHRQH
WPWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQV
WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAG
SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI
FVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVLKNFG
HREYEQLIWWLALGVYCAFTVFAIVFNLINTVTAQLMEEQGEVITQHLLH
DLGVS*

LD06131.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
rho-PB 355 CG1004-PB 1..355 1..355 1850 100 Plus
rho-PA 355 CG1004-PA 1..355 1..355 1850 100 Plus
ru-PA 341 CG1214-PA 24..340 28..354 740 46.7 Plus
stet-PA 330 CG33166-PA 67..330 102..354 662 48.5 Plus
stet-PB 485 CG33166-PB 222..485 102..354 662 48.5 Plus