BDGP Sequence Production Resources |
Search the DGRC for LD06131
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 61 |
Well: | 31 |
Vector: | pBS SK- |
Associated Gene/Transcript | rho-RA |
Protein status: | LD06131.pep: gold |
Preliminary Size: | 2596 |
Sequenced Size: | 2525 |
Gene | Date | Evidence |
---|---|---|
CG1004 | 2001-01-01 | Release 2 assignment |
CG1004 | 2002-06-10 | Blastp of sequenced clone |
CG1004 | 2003-01-01 | Sim4 clustering to Release 3 |
rho | 2008-04-29 | Release 5.5 accounting |
rho | 2008-08-15 | Release 5.9 accounting |
rho | 2008-12-18 | 5.12 accounting |
2525 bp (2525 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121641
> LD06131.complete CGAGCGCGAGATCATCAAACTGAGAAAGTCGGACTGCGACTCGAAACTGA AATTGAAACTGAAAGAAAGAAATATTCAAATTGTCGTGTGTGTGGGTGCA AGCAGAGAATATATATCTCAAGAATATCTGAATACAAGCTCCTGGATTTA CGAGCAGCAAAACTAAGTTACCAATGTGCGAGCCGAAAAAAGCGAGTGAA AAACGTGCGAATATGCCAGCTAACTAAAGACATTTGGATTACAAGAAACC CACGCATTTTGGATTATAAACATTGCGACAGGCAGAAAAACCTAAGAATT TCTTCAACGGCGCCAGCATGGAGAACTTAACGCAGAATGTAAACGAAACC AAGGTGGATTTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGA GCATGCCACCGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCT CCAGTTCCTCCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGC AGCACCTGCTGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGC CATCCCGGCCACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGT ACGTCCACCGCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATT GAGATTGCCATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTT CGGGCTACCCGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGG ACCGGCGTCTGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCC AACTGGTTCCACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCAT TCCCCTGGAGGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGG CGGGCGTTTTTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTC TTCCTGGTGGGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCT GGCCAACATTACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAAC TCGGATCCGTTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTAC ACCCAATACTTCGATGGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTA CATTGCCCACCTGACGGGAGCCCTGGCAGGACTAACGATCGGCTTTCTGG TGCTAAAGAACTTCGGTCACCGAGAGTACGAGCAGCTCATCTGGTGGCTA GCGTTGGGCGTCTACTGTGCCTTCACCGTCTTCGCCATCGTTTTCAACCT GATCAACACGGTGACCGCTCAGCTGATGGAGGAGCAGGGTGAGGTGATTA CCCAGCATCTGTTGCACGACCTGGGAGTGTCCTAAGTTTGAGGTTCGGAG TCGTCAGCATGCTCGCAGGGATTCGGAATCTGCTTGAGCTTCAGGAGAGA TCGAGAGACAGAGAGTTGGTGGAAAAGAAAAGTTCACTCAACGATTTAGT TCAAAACTAATTCGATATTCGTTTGGCTTTTGCTTTTCGTTAGCATTATC TCGTTATCGTTACCGTTTGCAGTTAAACGTTTCAGTTCCGAAACATAGTA CACAAACTCAAAAAAAAAAAAAACAAATCAAGAGAAATACACTGGACCAA AAAGAAAGTGCGAGGAGTGAGGAGAACATAAACCGAAGCCGAAACGTGTA AACAAATGTTGTGATAGAACCAAAGACTGAATTTATTTCGCGTGTAAAAA CCAAGTAAAAATCAAGAGGAAAATCAAAGAGGAGAAACAGAACTAATCGC CTCTCGCTATGATTTAAATGATTTATCCATGTTTTCAATTAATGGTTTGT CTGTTTTCTTAAATTATGTATTTATTGGCCGCAATTACTACGAATGAATC GAATCGAAGCATCAGCAAACTGTATCAAATTGTTTATACATCCATAAGCA TAATGTGCTCCGAATTGTAGGATTTAGTGTTATAATTTATATATATTTAG GTATAACTAGCCCTCCTAACAAATTGTTTCAAATTGTAAATACTATTAAG TCGCACACTAGTCAAACAACAACAACAGCAACAGCAAAAACAACAAAAAA AATATGGAAAACCACAGCAAAGAACCATTCAATTCAGATCAATTAAGCAA ATCGAGTTAAATTAAATTAAATTATACTAAAGTCACTTAATGCGTTACAA AATCGAGCATCGTAATCCCCTACACACACACACACACACACACACTCGAA AGTATTACTAATTATATTTATTTATGGTAGGGCAGCGAGGGTTTATTAAT TCGTCAATTGAGCGAACTATTTATTTATTTATTTATTTAATAATTTAGTG AAATTCACACAAACAAGCACGAAAAAACAACAACAACACAAGAGAGAGAA GAAACAAACCAATTCAACTGTAAAAATATCCAATTGAAAAATACACACGA AAAGCCAAAGAAAATAAAAAATCAAAACATTTCAAGAATACAACAGTAAT AACAAAATAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rho-RA | 2745 | rho-RA | 92..2599 | 1..2509 | 12505 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 1466622..1468067 | 1071..2508 | 6600 | 97.8 | Plus |
chr3L | 24539361 | chr3L | 1466063..1466482 | 652..1071 | 2055 | 99.3 | Plus |
chr3L | 24539361 | chr3L | 1465039..1465397 | 295..653 | 1780 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 1463410..1463705 | 1..296 | 1465 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 1467039..1468476 | 1071..2509 | 7145 | 99.9 | Plus |
3L | 28110227 | 3L | 1466488..1466907 | 652..1071 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 1465464..1465822 | 295..653 | 1795 | 100 | Plus |
3L | 28110227 | 3L | 1463835..1464130 | 1..296 | 1480 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 1467039..1468476 | 1071..2509 | 7155 | 99.9 | Plus |
3L | 28103327 | 3L | 1466488..1466907 | 652..1071 | 2100 | 100 | Plus |
3L | 28103327 | 3L | 1465464..1465822 | 295..653 | 1795 | 100 | Plus |
3L | 28103327 | 3L | 1463835..1464130 | 1..296 | 1480 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 5025..5089 | 2356..2292 | 118 | 64.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1463410..1463705 | 1..296 | 99 | -> | Plus |
chr3L | 1465041..1465397 | 297..653 | 99 | -> | Plus |
chr3L | 1466065..1466482 | 654..1071 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 1..1068 | 318..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 1..1068 | 318..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 1..1068 | 318..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 1..1068 | 318..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 1..1068 | 318..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 44..2550 | 1..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 44..2550 | 1..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 25..2531 | 1..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 44..2550 | 1..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
rho-RA | 25..2531 | 1..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1465466..1465822 | 297..653 | 100 | -> | Plus |
3L | 1463835..1464130 | 1..296 | 100 | -> | Plus |
3L | 1466490..1466907 | 654..1071 | 100 | -> | Plus |
3L | 1467040..1468475 | 1072..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1465466..1465822 | 297..653 | 100 | -> | Plus |
3L | 1463835..1464130 | 1..296 | 100 | -> | Plus |
3L | 1466490..1466907 | 654..1071 | 100 | -> | Plus |
3L | 1467040..1468475 | 1072..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1465466..1465822 | 297..653 | 100 | -> | Plus |
3L | 1463835..1464130 | 1..296 | 100 | -> | Plus |
3L | 1466490..1466907 | 654..1071 | 100 | -> | Plus |
3L | 1467040..1468475 | 1072..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1463835..1464130 | 1..296 | 100 | -> | Plus |
arm_3L | 1465466..1465822 | 297..653 | 100 | -> | Plus |
arm_3L | 1466490..1466907 | 654..1071 | 100 | -> | Plus |
arm_3L | 1467040..1468475 | 1072..2508 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1463835..1464130 | 1..296 | 100 | -> | Plus |
3L | 1465466..1465822 | 297..653 | 100 | -> | Plus |
3L | 1466490..1466907 | 654..1071 | 100 | -> | Plus |
3L | 1467040..1468475 | 1072..2508 | 99 | Plus |
Translation from 317 to 1384
> LD06131.pep MENLTQNVNETKVDLGQEKEKEASQEEEHATAAKETIIDIPAACSSSSNS SSYDTDCSTASSTCCTRQGEHIYMQREAIPATPLPESEDIGLLKYVHRQH WPWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQV WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAG SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI FVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVLKNFG HREYEQLIWWLALGVYCAFTVFAIVFNLINTVTAQLMEEQGEVITQHLLH DLGVS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\rho-PA | 365 | GF24766-PA | 1..365 | 1..355 | 1626 | 86.2 | Plus |
Dana\GF24760-PA | 352 | GF24760-PA | 29..351 | 25..354 | 793 | 49 | Plus |
Dana\GF25034-PA | 485 | GF25034-PA | 197..461 | 78..330 | 689 | 51.1 | Plus |
Dana\GF21300-PA | 418 | GF21300-PA | 106..406 | 39..328 | 459 | 35.6 | Plus |
Dana\GF15679-PA | 260 | GF15679-PA | 53..256 | 84..302 | 311 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14792-PA | 353 | GG14792-PA | 1..353 | 1..355 | 1839 | 96.9 | Plus |
Dere\GG14787-PA | 349 | GG14787-PA | 106..349 | 102..355 | 699 | 55.3 | Plus |
Dere\GG14598-PA | 485 | GG14598-PA | 197..485 | 78..354 | 671 | 47 | Plus |
Dere\GG18433-PA | 417 | GG18433-PA | 105..405 | 39..328 | 466 | 35.9 | Plus |
Dere\GG10271-PA | 263 | GG10271-PA | 55..253 | 87..299 | 320 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16240-PA | 436 | GH16240-PA | 94..436 | 53..355 | 1434 | 81.3 | Plus |
Dgri\GH16237-PA | 321 | GH16237-PA | 76..319 | 102..354 | 745 | 57.8 | Plus |
Dgri\GH15206-PA | 476 | GH15206-PA | 196..476 | 78..354 | 706 | 49 | Plus |
Dgri\GH24104-PA | 420 | GH24104-PA | 108..408 | 39..328 | 459 | 35.6 | Plus |
Dgri\GH11182-PA | 229 | GH11182-PA | 24..229 | 79..299 | 315 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rho-PB | 355 | CG1004-PB | 1..355 | 1..355 | 1850 | 100 | Plus |
rho-PA | 355 | CG1004-PA | 1..355 | 1..355 | 1850 | 100 | Plus |
ru-PA | 341 | CG1214-PA | 24..340 | 28..354 | 740 | 46.7 | Plus |
stet-PA | 330 | CG33166-PA | 67..330 | 102..354 | 662 | 48.5 | Plus |
stet-PB | 485 | CG33166-PB | 222..485 | 102..354 | 662 | 48.5 | Plus |
rho-4-PB | 417 | CG1697-PB | 179..405 | 102..328 | 472 | 40.5 | Plus |
rho-4-PA | 417 | CG1697-PA | 179..405 | 102..328 | 472 | 40.5 | Plus |
rho-6-PB | 263 | CG17212-PB | 54..251 | 84..297 | 328 | 32.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16668-PA | 398 | GI16668-PA | 31..398 | 23..355 | 1453 | 79.7 | Plus |
Dmoj\GI16724-PA | 476 | GI16724-PA | 196..476 | 78..354 | 710 | 50.3 | Plus |
Dmoj\GI16665-PA | 311 | GI16665-PA | 67..309 | 102..354 | 695 | 56.7 | Plus |
Dmoj\GI14374-PA | 420 | GI14374-PA | 182..408 | 102..328 | 469 | 40.9 | Plus |
Dmoj\GI15831-PA | 242 | GI15831-PA | 27..234 | 80..298 | 319 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22508-PA | 342 | GL22508-PA | 20..342 | 35..355 | 1123 | 71.6 | Plus |
Dper\GL22503-PA | 344 | GL22503-PA | 103..343 | 102..354 | 757 | 59.8 | Plus |
Dper\GL22587-PA | 487 | GL22587-PA | 198..487 | 78..354 | 673 | 46.4 | Plus |
Dper\GL26733-PA | 417 | GL26733-PA | 179..405 | 102..328 | 465 | 40.5 | Plus |
Dper\GL19515-PA | 204 | GL19515-PA | 57..197 | 146..298 | 173 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\rho-PA | 365 | GA10027-PA | 22..365 | 35..355 | 1479 | 87.5 | Plus |
Dpse\GA11431-PA | 336 | GA11431-PA | 95..335 | 102..354 | 755 | 59.8 | Plus |
Dpse\GA17336-PA | 487 | GA17336-PA | 198..487 | 78..354 | 664 | 45.8 | Plus |
Dpse\GA14244-PA | 417 | GA14244-PA | 179..405 | 102..328 | 465 | 40.5 | Plus |
Dpse\GA14394-PA | 252 | GA14394-PA | 65..245 | 102..298 | 273 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\ve-PA | 364 | GM14413-PA | 10..364 | 1..355 | 1877 | 98.6 | Plus |
Dsec\GM14406-PA | 344 | GM14406-PA | 13..344 | 17..355 | 702 | 45.4 | Plus |
Dsec\GM14213-PA | 485 | GM14213-PA | 197..485 | 78..354 | 670 | 47.5 | Plus |
Dsec\GM13096-PA | 417 | GM13096-PA | 105..405 | 39..328 | 470 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13619-PA | 355 | GD13619-PA | 1..355 | 1..355 | 1867 | 98 | Plus |
Dsim\GD13615-PA | 344 | GD13615-PA | 13..344 | 17..355 | 705 | 45.4 | Plus |
Dsim\GD13475-PA | 485 | GD13475-PA | 197..485 | 78..354 | 671 | 47.5 | Plus |
Dsim\GD17034-PA | 382 | GD17034-PA | 144..370 | 102..328 | 465 | 40.5 | Plus |
Dsim\GD22127-PA | 267 | GD22127-PA | 58..257 | 84..299 | 322 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\rho-PA | 401 | GJ12920-PA | 38..401 | 37..355 | 1472 | 79.4 | Plus |
Dvir\GJ12468-PA | 476 | GJ12468-PA | 202..476 | 84..354 | 711 | 51.1 | Plus |
Dvir\GJ12917-PA | 314 | GJ12917-PA | 70..312 | 102..354 | 698 | 57.5 | Plus |
Dvir\GJ10319-PA | 246 | GJ10319-PA | 25..233 | 80..299 | 304 | 30.2 | Plus |
Dvir\GJ19413-PA | 350 | GJ19413-PA | 182..299 | 102..215 | 164 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16984-PA | 391 | GK16984-PA | 1..391 | 1..355 | 1557 | 79 | Plus |
Dwil\GK17206-PA | 475 | GK17206-PA | 116..475 | 2..354 | 679 | 40.5 | Plus |
Dwil\GK16979-PA | 315 | GK16979-PA | 74..314 | 102..354 | 664 | 55.9 | Plus |
Dwil\GK15930-PA | 418 | GK15930-PA | 180..406 | 102..328 | 462 | 40.9 | Plus |
Dwil\GK14633-PA | 257 | GK14633-PA | 65..249 | 98..298 | 293 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21154-PA | 355 | GE21154-PA | 1..355 | 1..355 | 1833 | 96.3 | Plus |
Dyak\GE21150-PA | 343 | GE21150-PA | 13..343 | 17..355 | 704 | 44.4 | Plus |
Dyak\GE20958-PA | 485 | GE20958-PA | 197..485 | 78..354 | 670 | 47.5 | Plus |
Dyak\GE15951-PA | 417 | GE15951-PA | 105..405 | 39..328 | 466 | 35.9 | Plus |
Dyak\GE12391-PA | 263 | GE12391-PA | 72..249 | 102..295 | 295 | 33 | Plus |
Translation from 317 to 1384
> LD06131.hyp MENLTQNVNETKVDLGQEKEKEASQEEEHATAAKETIIDIPAACSSSSNS SSYDTDCSTASSTCCTRQGEHIYMQREAIPATPLPESEDIGLLKYVHRQH WPWFILVISIIEIAIFAYDRYTMPAQNFGLPVPIPSDSVLVYRPDRRLQV WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAG SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI FVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVLKNFG HREYEQLIWWLALGVYCAFTVFAIVFNLINTVTAQLMEEQGEVITQHLLH DLGVS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rho-PB | 355 | CG1004-PB | 1..355 | 1..355 | 1850 | 100 | Plus |
rho-PA | 355 | CG1004-PA | 1..355 | 1..355 | 1850 | 100 | Plus |
ru-PA | 341 | CG1214-PA | 24..340 | 28..354 | 740 | 46.7 | Plus |
stet-PA | 330 | CG33166-PA | 67..330 | 102..354 | 662 | 48.5 | Plus |
stet-PB | 485 | CG33166-PB | 222..485 | 102..354 | 662 | 48.5 | Plus |