Clone LD06204 Report

Search the DGRC for LD06204

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:62
Well:4
Vector:pBS SK-
Associated Gene/TranscriptCG45068-RA
Protein status:LD06204.pep: gold
Preliminary Size:2564
Sequenced Size:3220

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3419 2002-01-01 Sim4 clustering to Release 2
CG3419 2002-05-31 Blastp of sequenced clone
CG3419 2003-01-01 Sim4 clustering to Release 3
CG3419 2008-04-29 Release 5.5 accounting
CG3419 2008-08-15 Release 5.9 accounting
CG3419 2008-12-18 5.12 accounting

Clone Sequence Records

LD06204.complete Sequence

3220 bp (3220 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118320

> LD06204.complete
AAAACAAATAGTTGTCTGTTTTTAATTTTTAGATCTTAGGAAACACAATC
AAGCAACTAAATTACTTAGGAAATGCGCTTGACAACGCTGTGGCAGAACC
GCTCGCCTGGCGACCGCCATCTGAGTACATACTTTTGCTTTGCGGCGGTG
CGTCTGCTGCTCGTCTTTGTGCCCCAACTGGGCTACGTGCATCCGGATGA
GTTCTTCCAGAGCGTGGAGGTAATGACTGGCGATCACTTTCGGCTGGAGC
ATACGCGCACCTGGGAGTTCAACAACTCCCTGCCGGTGAGGTCAATCGTT
CTGCCCTTCGCTCTGCTCCGGATTCCCTGGAGCTTCTACGAGTTCGTTGC
CGAGTGCCTGAAGGCCTGGTGGCAACTGGAGCTGCTGGGCACCTACGCGT
ACGTGGTGTTCCCCCGGCTGATTTACACTCTGATCTCCTTTAGCAACGAC
TACTGCTTGTTCCGCATTTGCCGGTTGTACGGACTCCGATTCGAGATACG
CCTCTTGGCAATGGGCAGCTCCTGGATTCTTCTCGTCTTCGGCACGCGCA
CCTTCTCCAACAGCCTGGAAATGGCCATGTGCTCCTGGCTGCTCTGCTTG
GTATCGGAATGCATGTTGCGCACGAACACGGTGGTGTACAAAAAGGAGTT
TCTGGAAGAGAAGTACGACAAGGCGGAGTCCATCAGCGAAAGGGTGCGCA
TTTGGAAGCTGAAGAACTCCCTGCCCGCGCACAATCTGCAGCACCTAATG
GCCATGTCAACCATTTGCGTAGCTGGCGTGTTCAATAGACCTACATTCCT
GCTCTTTGGAGCACCGATGGTCTTCTTTTGGCTGCTGCGAGGCATGGGAA
CCAGAAGCATCACCTTCAGGGACTTTAATCTGCGCATTGCTCTCTTCTGC
TTGTGCGCCTTGCCTGCTCTAGTACTGTTTATATTCTGCGACTCACTGTA
CTACCAGCACTTGACCCTCGGAGAACTGCACATGATGCACTTGAGCATCG
ACAACTTTGTCTTCACGCCCTGGAACTTCATAAAAGCCAACCTGGATTCG
GCACAGACGGCCAGCCATGGAGTCCACCCATGCTATGTCCACCTGATGGT
CAACATGCCAATGCTGTTCAACGTCCTTGCCTTGGCTTCGCTGGGAGCCT
TCGCACAGTTGCTGCTCAGATTCTTCCGGGCGGAATATCAGGTGCTGCCG
CGTTTCCAAAGCATCGTGTCATTGATGTCGGGGGCCATATTTGTGCCCCT
CTTCTTTCTTTCCCTGATCAATCACCAGGAGCCGCGCTTTCTCCTGCCAG
TCACATTTCCCCTCATTCTGCTTCATGCGCCCAAACTAATCACAGGATTT
AGTGCCAAGTATCCCTTCCAAAAGGACCACCCACTCTTGCGCTTGTTCTA
CGACAAACTGCTTTCGAGCAAAGCTTCTGGTCCCTATTTGCTGAAGATCT
GGTACGTAAGCAATGTGGCGCTGACCCTGTTCTTTGGCTTCATCCACCAG
GCGGGCGTTTATCCCTTGGCGGCGGACATTTCACATGTGATTGCCACTAA
GCCGGCAGCAACGCACGTTCATCTTATAACATCGCACATATACAGCCTGC
CCTTGCACCTGATCAACATACCCAGTTCGAGGGTACTGCACTTTAACCGC
CTGACTCACCAGCGATATCGTCGTCCAAGAGACTTTTATATGTACGAGTA
CGGAGGCCTACCCTTGGATTCCCTGCTGCAGAAGGTAAAACTCATCAGTG
GGAGCTGCGAGGTGAAGAAGTCGGGACCAAGTCGGCGGCGCTACAAACTG
TATTTGGCCATTCCGGCGTCACTAAGTGCAGATCTTCACGAGGCTTTAGT
ACACTCGAATGCCTCCAGCTACCTTAACTTCGAACTGCTAAAGGTGTTCT
ATCCACACCTCTCCACGGAGGCGTTCCCTCACCTTCAGGGCAGGCATCCG
TGCGATGTGGATGCTCCTCATTGGGCGCACGATGATCTGCGGGGCACTTG
CTCCGCGGAGCAGCTGCCAGCGTTTAGCTTCGCCTACCTGAACAAGCAAT
TCAGCTCCTTCGTCCATCAACTAGGACTGGCGCTCTACGAGATCGATGTG
ACGCGCAACAAGCCGCGGTCTGTAGTAATAAAGAAGGCCTCCATGACGGA
AACCGCGGCGTAGTCTTCACTTCTTGGCCAGTCCAAGTGCCTTATACCAA
AGTTCTAGGTTAAGATTAACTATTTATTGTAACTTAAGTCTCGTGAATCA
CAACTTTCGCGATACAAAATACTCTTGTTAAGCTTGACTTCTGTAAACAT
TCCCAATATGTGCACAGCAAACTTGAAATTTTGAATATGGCTAGTCATTA
CCAAATATTCCCTTGATCTTAAGATTCATTCCATACAAACTAACATATAA
GGACAATAATACAGAGTGACCACAGATAAATAGAGCAGCCAAGACTTAAA
TCCTATATAAAAGTTGTCGAACGCTGGAAAAAAGTAATCCATTTGACACG
CCGTTGGCACTTAATTCCCAACAAACATCTGAGGCGTGGGGCGCGGCATC
CGCGTTCATTGAACGTTACCCGGCAGAGATCTCGTTGCGGACGCAATTGT
GTTCTGATTTAGATTTTGTGTTTGGGCCGCCTAAGCCGTAAACCCGTTTT
GGCAATGAGGCGACAATTGGCCTATAAAATGCTGGACCATTTTGGCCAAC
AGCATCAGTCACCGACGAACCAACCAAACCAATCTACAAAATCAACATGA
AGTTCCTTATCTGCTTGGCCCTCTGCATCGCCGCCGCCCAGGCTGGCTTC
ATCGCCTCTCCGGTGACCACTTATGCCGCTGCTCCAGCATATGCCGCCTC
CTACGCTGCTCCCGTGGCTTACAGCGCCCCAGTGGCCACCTATGCCGCTG
CTGCACCAGCCTACTCCACCTACGCCGCCGCCGCTCCTGCCTACTCGACC
TACGCCGCCGCCGCCCCTGCCTACTCCACATACGCTGCCGCCGCTCCCGC
TTACACCGCCTCGGTGTACAGTGCTCCGGCCTACACCGCTCCTGTGACTA
CCTATGCTGCTGGTGCCGCATACGCCGCTCCCGTCACCACCTACTCTGCT
CCGGCCATCGTCAGCCCCATCCTGAAGAAGAAGTAATCGCGTACTATCAT
TGAGCCATCCCAAACGATCCGATAAACTAAATAAAACGCCAATCTAAGCG
AAAAAAAAAAAAAAAAAAAA

LD06204.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3419-RB 3385 CG3419-RB 76..3278 1..3203 16015 100 Plus
CG3419-RA 2565 CG3419-RA 1..2123 1..2123 10600 99.9 Plus
CG3419.a 2555 CG3419.a 219..2113 229..2123 9460 99.9 Plus
CG3419-RA 2565 CG3419-RA 2180..2565 2751..3136 1930 100 Plus
CG3419.a 2555 CG3419.a 2170..2555 2751..3136 1930 100 Plus
CG3419.a 2555 CG3419.a 1..220 1..220 1100 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20298101..20300335 229..2463 11175 100 Plus
chr2R 21145070 chr2R 20300770..20301218 2751..3200 2155 99.1 Plus
chr2R 21145070 chr2R 20300417..20300707 2462..2752 1440 99.7 Plus
chr2R 21145070 chr2R 20297815..20298044 1..230 1150 100 Plus
chr3R 27901430 chr3R 9222258..9222383 2829..2704 360 85.7 Minus
chr3R 27901430 chr3R 9223048..9223180 2697..2829 350 84.2 Plus
chr3R 27901430 chr3R 9223259..9223415 2983..3136 285 80.3 Plus
chr3R 27901430 chr3R 9222023..9222139 3136..3020 240 80.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24412177..24414411 229..2463 11175 100 Plus
2R 25286936 2R 24414846..24415298 2751..3203 2265 100 Plus
2R 25286936 2R 24414493..24414783 2462..2752 1455 100 Plus
2R 25286936 2R 24411891..24412120 1..230 1150 100 Plus
3R 32079331 3R 13397026..13397151 2829..2704 360 85.7 Minus
3R 32079331 3R 13397817..13397949 2697..2829 350 84.2 Plus
3R 32079331 3R 13398028..13398184 2983..3136 270 79.6 Plus
3R 32079331 3R 13396809..13396925 3136..3020 240 80.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24413376..24415610 229..2463 11175 100 Plus
2R 25260384 2R 24416045..24416497 2751..3203 2265 100 Plus
2R 25260384 2R 24415692..24415982 2462..2752 1455 100 Plus
2R 25260384 2R 24413090..24413319 1..230 1150 100 Plus
3R 31820162 3R 13137857..13137982 2829..2704 360 85.7 Minus
3R 31820162 3R 13138648..13138780 2697..2829 350 84.2 Plus
3R 31820162 3R 13138899..13139015 3020..3136 255 81.1 Plus
3R 31820162 3R 13137640..13137756 3136..3020 240 80.3 Minus
Blast to na_te.dros performed on 2019-03-16 04:02:33 has no hits.

LD06204.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:03:25 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20300772..20300861 2753..2842 98 == Plus
chr2R 20301030..20301218 3011..3200 98   Plus
chr2R 20300419..20300707 2464..2752 99 -> Plus
chr2R 20297815..20298043 1..229 100 -> Plus
chr2R 20298102..20300335 230..2463 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:38:15 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG3419-RB 1..2091 73..2163 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:03 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG3419-RB 1..2091 73..2163 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:50 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG3419-RB 1..2091 73..2163 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:37 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG3419-RB 1..2091 73..2163 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:24:06 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG45068-RA 1..2091 73..2163 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:07 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG3419-RB 1..3200 1..3200 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:03 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG3419-RB 1..3200 1..3200 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:50 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG3419-RB 1..3200 1..3200 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:37 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG3419-RB 1..3200 1..3200 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:24:06 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
CG45068-RA 22..3221 1..3200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:25 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24411891..24412119 1..229 100 -> Plus
2R 24412178..24414411 230..2463 100 -> Plus
2R 24414495..24414783 2464..2752 100 -> Plus
2R 24414848..24415295 2753..3200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:25 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24411891..24412119 1..229 100 -> Plus
2R 24412178..24414411 230..2463 100 -> Plus
2R 24414495..24414783 2464..2752 100 -> Plus
2R 24414848..24415295 2753..3200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:25 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24411891..24412119 1..229 100 -> Plus
2R 24412178..24414411 230..2463 100 -> Plus
2R 24414495..24414783 2464..2752 100 -> Plus
2R 24414848..24415295 2753..3200 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:50 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20299414..20299642 1..229 100 -> Plus
arm_2R 20299701..20301934 230..2463 100 -> Plus
arm_2R 20302018..20302306 2464..2752 100 -> Plus
arm_2R 20302371..20302818 2753..3200 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:03 Download gff for LD06204.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24415712..24416000 2464..2752 100 -> Plus
2R 24413108..24413336 1..229 100 -> Plus
2R 24413395..24415628 230..2463 100 -> Plus
2R 24416065..24416512 2753..3200 100   Plus

LD06204.hyp Sequence

Translation from 72 to 2162

> LD06204.hyp
MRLTTLWQNRSPGDRHLSTYFCFAAVRLLLVFVPQLGYVHPDEFFQSVEV
MTGDHFRLEHTRTWEFNNSLPVRSIVLPFALLRIPWSFYEFVAECLKAWW
QLELLGTYAYVVFPRLIYTLISFSNDYCLFRICRLYGLRFEIRLLAMGSS
WILLVFGTRTFSNSLEMAMCSWLLCLVSECMLRTNTVVYKKEFLEEKYDK
AESISERVRIWKLKNSLPAHNLQHLMAMSTICVAGVFNRPTFLLFGAPMV
FFWLLRGMGTRSITFRDFNLRIALFCLCALPALVLFIFCDSLYYQHLTLG
ELHMMHLSIDNFVFTPWNFIKANLDSAQTASHGVHPCYVHLMVNMPMLFN
VLALASLGAFAQLLLRFFRAEYQVLPRFQSIVSLMSGAIFVPLFFLSLIN
HQEPRFLLPVTFPLILLHAPKLITGFSAKYPFQKDHPLLRLFYDKLLSSK
ASGPYLLKIWYVSNVALTLFFGFIHQAGVYPLAADISHVIATKPAATHVH
LITSHIYSLPLHLINIPSSRVLHFNRLTHQRYRRPRDFYMYEYGGLPLDS
LLQKVKLISGSCEVKKSGPSRRRYKLYLAIPASLSADLHEALVHSNASSY
LNFELLKVFYPHLSTEAFPHLQGRHPCDVDAPHWAHDDLRGTCSAEQLPA
FSFAYLNKQFSSFVHQLGLALYEIDVTRNKPRSVVIKKASMTETAA*

LD06204.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG45068-PA 696 CG45068-PA 1..696 1..696 3675 100 Plus

LD06204.pep Sequence

Translation from 72 to 2162

> LD06204.pep
MRLTTLWQNRSPGDRHLSTYFCFAAVRLLLVFVPQLGYVHPDEFFQSVEV
MTGDHFRLEHTRTWEFNNSLPVRSIVLPFALLRIPWSFYEFVAECLKAWW
QLELLGTYAYVVFPRLIYTLISFSNDYCLFRICRLYGLRFEIRLLAMGSS
WILLVFGTRTFSNSLEMAMCSWLLCLVSECMLRTNTVVYKKEFLEEKYDK
AESISERVRIWKLKNSLPAHNLQHLMAMSTICVAGVFNRPTFLLFGAPMV
FFWLLRGMGTRSITFRDFNLRIALFCLCALPALVLFIFCDSLYYQHLTLG
ELHMMHLSIDNFVFTPWNFIKANLDSAQTASHGVHPCYVHLMVNMPMLFN
VLALASLGAFAQLLLRFFRAEYQVLPRFQSIVSLMSGAIFVPLFFLSLIN
HQEPRFLLPVTFPLILLHAPKLITGFSAKYPFQKDHPLLRLFYDKLLSSK
ASGPYLLKIWYVSNVALTLFFGFIHQAGVYPLAADISHVIATKPAATHVH
LITSHIYSLPLHLINIPSSRVLHFNRLTHQRYRRPRDFYMYEYGGLPLDS
LLQKVKLISGSCEVKKSGPSRRRYKLYLAIPASLSADLHEALVHSNASSY
LNFELLKVFYPHLSTEAFPHLQGRHPCDVDAPHWAHDDLRGTCSAEQLPA
FSFAYLNKQFSSFVHQLGLALYEIDVTRNKPRSVVIKKASMTETAA*

LD06204.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13610-PA 696 GF13610-PA 1..696 1..696 3257 86.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22964-PA 826 GG22964-PA 1..691 1..691 3598 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20992-PA 708 GH20992-PA 1..700 1..696 2880 78.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-Z-PA 696 CG45068-PA 1..696 1..696 3675 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20629-PA 704 GI20629-PA 8..687 4..683 2868 79.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20079-PA 707 GL20079-PA 7..679 3..675 3108 84.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30267-PA 821 GA30267-PA 7..679 3..675 3099 83.8 Plus
Dpse\GA30267-PB 707 GA30267-PB 7..679 3..675 3098 83.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11858-PA 818 GM11858-PA 1..694 1..694 3614 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11855-PA 689 GD11855-PA 1..689 1..696 3577 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21598-PA 707 GJ21598-PA 7..689 3..685 2933 81.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19459-PA 703 GK19459-PA 7..693 3..689 2911 80.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14401-PA 696 GE14401-PA 1..696 1..696 3601 96.6 Plus