Clone LD06278 Report

Search the DGRC for LD06278

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:62
Well:78
Vector:pBS SK-
Associated Gene/TranscriptDeaf1-RB
Protein status:LD06278.pep: gold
Preliminary Size:2388
Sequenced Size:2409

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8567 2001-01-01 Release 2 assignment
CG8567 2003-01-01 Sim4 clustering to Release 3
CG8567 2003-02-28 Blastp of sequenced clone
Deaf1 2008-04-29 Release 5.5 accounting
Deaf1 2008-08-15 Release 5.9 accounting
Deaf1 2008-12-18 5.12 accounting

Clone Sequence Records

LD06278.complete Sequence

2409 bp (2409 high quality bases) assembled on 2003-02-28

GenBank Submission: BT004907

> LD06278.complete
AAGAAGAGGAGGATATCAACTTTTTTAGTAAATTAGTAAAGTTTAAGCTT
AAAAAATGTAAATTGCAATGAACCACCAGCTGTAAATAGGGCAATGCAAC
TTGAACGCGACCTGCGCGCAATTCGCATGTAAGTCGTGGTGAGCGCTGAA
AAAAACGCGGATCGCGGCGGCAGCAACAACAACAACAACAACAGACCGTC
CGTCGTCTCGGTAGACGTCGAATAATATACATATATCGCAATAATCCAAT
TGCAAGTGGTAATCCGATGAACAATTCAAGTGCATTACTATCGTTGGACC
GCAGAATAAGTGAAAGTGAACTGGCATAACAATACTATGGAACAGGTTGA
CTCCTCCACCGAGCTGCACCTGAATAGGAAAGATCTGGCCGCGCTGGCCG
AGGATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCAT
CATCATCATCACCACCAGTTGGACACCAAGGTTCGCATGGTCACATCCTC
CTCCAACGACAACAGTGGTAGCGGCGGCGCCAGTGGCGGTACAAGCGGAG
CGGGCGGAGGAAACGGCGGTGGCGGTGTGGTTTCGGTGCCCGTATCCCTG
CCCATCGGTTCGATGATAACCGGCACTACCTTCAATGTGATCACGCCCGA
CCAGCTGCCCCCTCACTTCAAGCCGATGCTGTGCGTCGACAACAATGGCT
ACCTGTCCGGCAGCACGGTCAGCATGGGCAACGACCTCAAGACGATCGTC
ATCCAGCAACAGCAGACGCAACCAGGCGGCGGCGGTGGCGGCGCCAATAA
TGCGGGCACCAATACGACCGCCACAAATACGATTGGACTGAATCACGATG
GCTCCGGGAGCAACAATAGCCACGACAGCCTGGCCACCTTGGAGCACGCC
GCGGGCGGAGCGAGTGGCGTCGGCGGTGGCGGCGGCGGAACGGGTGGTGG
CTCCTCGGGATGGTCGGAGAACCCGTCAACCCAGCACAATGAGGTCTTCC
AGATCCGCTGCAAAACCACCTGCGCCGAGTTATACCGCAGCAAGCTGGGC
TCCGGCGGCCGTGGACGCTGTGTGAAGTACAAGGACAAGTGGCATACGCC
CAGTGAGTTTGAGCATGTGTGTGGCCGGGGCTCCAGCAAGGATTGGAAGC
GTTCGATCAAGTACGGCGGCAAATCGCTGCAGTCCCTCATCGATGAGGGT
ACGCTCACGCCGCACGCGACCAACTGCAGCTGCACCGTCTGCTGCGACGA
CGAAGCAGCTTCCGGCCCTGTCCGTCTCTTTACACCGTACAAGCGGCGGA
AGCGGAATCAAACTGATCTCGATATGGAGTCTGGACCCAAACGCAAGCGT
AACACCCATCATAGTAACAACAACAACAGTAACACCAATAACAACAACAC
GAGCGGGAGCGGCGCCAACAACTGTGTGGATGTAACTGCAGCTGTGGCTG
CTGCAACAGCCAGCGTGGTGGACGAGAACAACATGTTCCTGTCGGAAGAG
AACATCACGTCCAAGGATGAGCCGTGGGCAGCGCTCAACGACAGCCTGGA
CACCTCCACCGAGCTGGTCGATCAGTCGCAGATGGGCAACACGTACGAAC
GGGAAACGTTTGTGGTGAACATCAACGATGGATCCTCCATCGCCGTCCTG
GACACCAGCCAGTCGATGAAGAACATCGAGCACGTGTACTGCACCATGGT
CAAGGCCACCAATGACTTCAAACGCATGCTTAACGACATGAAGCAGTCCT
TCGAGCGTCGCATCGAGGTTCTGCAAAAGGAGCGCGATGCAGCGGTCAGC
GCGATGCGTGTCCAAGTGCACGCGGACATCGATGATCCAAATATTTCAGG
CTCCCTGCACGGCAACGAGATCATTTCGGCTAAGAAGTGCGCCAACTGTA
ACCGCGAAGCATTGGCCGAGTGCTCACTGTGCCGAAAGACGCCGTACTGC
TCGGAGTTCTGCCAGCGGAAGGATTGGAATGCTCACCAGGTGGAGTGCAC
AAGGAATCCACAAACGACAACGCAGCAGGTCATGCTGTTGATCGACGATC
AGTCCTAAGCAACGTAACGAAATGTACATACAAATTTTACTACTAATTAA
TACGATTATAGGAAGTCGACCCCCCCTCCCCCAAGTCGCTAAAGTCCTTG
CAGTTCGGTTCAGGTCAAACACCTGTAGTCCACTCCCACTCCCTTCCCCC
TCGACCCCTCTCTTCCCCCAAAGTTCCCATTAGAAGGCCTGCATCCTCTT
AGACGTATGTCCTACATTAATGTAATTCTTAACGTACATATAACTATATA
AATATATATACATTTTACTATTGAACGTAGGGCAAGCCAGCAAAGAAAAA
AAAAATAACAAAAAACAAGCGAAACGAAAGTAAAATTAATTAAAAAAAAA
AAAAAAAAA

LD06278.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Deaf1.a 3035 Deaf1.a 81..1338 1..1258 6290 100 Plus
Deaf1.g 3663 Deaf1.g 81..1338 1..1258 6290 100 Plus
Deaf1.c 3753 Deaf1.c 81..1338 1..1258 6290 100 Plus
Deaf1.a 3035 Deaf1.a 1345..2494 1256..2405 5720 99.8 Plus
Deaf1.g 3663 Deaf1.g 1345..2494 1256..2405 5720 99.8 Plus
Deaf1.c 3753 Deaf1.c 1345..2494 1256..2405 5720 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19808579..19809371 466..1258 3935 99.7 Plus
chr3L 24539361 chr3L 19817677..19818307 1257..1887 3155 100 Plus
chr3L 24539361 chr3L 19818380..19818885 1886..2391 2485 99.4 Plus
chr3L 24539361 chr3L 19807569..19808036 1..468 2325 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19819209..19820001 466..1258 3965 100 Plus
3L 28110227 3L 19828315..19828945 1257..1887 3155 100 Plus
3L 28110227 3L 19829018..19829537 1886..2405 2570 99.6 Plus
3L 28110227 3L 19818199..19818666 1..468 2340 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19812309..19813101 466..1258 3965 100 Plus
3L 28103327 3L 19821415..19822045 1257..1887 3155 100 Plus
3L 28103327 3L 19822118..19822637 1886..2405 2570 99.6 Plus
3L 28103327 3L 19811299..19811766 1..468 2340 100 Plus
Blast to na_te.dros performed 2019-03-15 18:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 7729..7828 2250..2154 115 59 Minus

LD06278.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:22:24 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19808691..19809371 578..1258 99 -> Plus
chr3L 19817679..19818307 1259..1887 94 -> Plus
chr3L 19818382..19818833 1888..2339 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:46 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 1..1722 337..2058 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:45 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 1..1722 337..2058 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:21 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 1..1722 337..2058 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:12 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 1..1722 337..2058 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:33 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 1..1722 337..2058 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:45 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 20..2410 1..2391 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:45 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 20..2410 1..2391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:21 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 26..2416 1..2391 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:12 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 20..2410 1..2391 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:33 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RB 26..2416 1..2391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:24 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19818199..19818666 1..468 100 -> Plus
3L 19819212..19820001 469..1258 100 -> Plus
3L 19828317..19828945 1259..1887 100 -> Plus
3L 19829020..19829523 1888..2391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:24 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19818199..19818666 1..468 100 -> Plus
3L 19819212..19820001 469..1258 100 -> Plus
3L 19828317..19828945 1259..1887 100 -> Plus
3L 19829020..19829523 1888..2391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:24 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19818199..19818666 1..468 100 -> Plus
3L 19819212..19820001 469..1258 100 -> Plus
3L 19828317..19828945 1259..1887 100 -> Plus
3L 19829020..19829523 1888..2391 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:21 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19811299..19811766 1..468 100 -> Plus
arm_3L 19812312..19813101 469..1258 100 -> Plus
arm_3L 19821417..19822045 1259..1887 100 -> Plus
arm_3L 19822120..19822623 1888..2391 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:26 Download gff for LD06278.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19811299..19811766 1..468 100 -> Plus
3L 19812312..19813101 469..1258 100 -> Plus
3L 19821417..19822045 1259..1887 100 -> Plus
3L 19822120..19822623 1888..2391 100   Plus

LD06278.pep Sequence

Translation from 336 to 2057

> LD06278.pep
MEQVDSSTELHLNRKDLAALAEDVVKEEVILESSSHHHHHHHHQLDTKVR
MVTSSSNDNSGSGGASGGTSGAGGGNGGGGVVSVPVSLPIGSMITGTTFN
VITPDQLPPHFKPMLCVDNNGYLSGSTVSMGNDLKTIVIQQQQTQPGGGG
GGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEHAAGGASGVGGGGG
GTGGGSSGWSENPSTQHNEVFQIRCKTTCAELYRSKLGSGGRGRCVKYKD
KWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDEGTLTPHATNCSCT
VCCDDEAASGPVRLFTPYKRRKRNQTDLDMESGPKRKRNTHHSNNNNSNT
NNNNTSGSGANNCVDVTAAVAAATASVVDENNMFLSEENITSKDEPWAAL
NDSLDTSTELVDQSQMGNTYERETFVVNINDGSSIAVLDTSQSMKNIEHV
YCTMVKATNDFKRMLNDMKQSFERRIEVLQKERDAAVSAMRVQVHADIDD
PNISGSLHGNEIISAKKCANCNREALAECSLCRKTPYCSEFCQRKDWNAH
QVECTRNPQTTTQQVMLLIDDQS*

LD06278.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23595-PA 583 GF23595-PA 1..583 1..573 2239 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16060-PA 572 GG16060-PA 1..572 1..573 3037 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14660-PA 561 GH14660-PA 1..561 1..573 2073 78.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Deaf1-PB 573 CG8567-PB 1..573 1..573 3049 100 Plus
Deaf1-PD 576 CG8567-PD 1..576 1..573 3035 99.5 Plus
Deaf1-PA 576 CG8567-PA 1..576 1..573 3035 99.5 Plus
Deaf1-PE 536 CG8567-PE 7..536 44..573 2821 100 Plus
Deaf1-PC 539 CG8567-PC 7..539 44..573 2807 99.4 Plus
sbb-PE 929 CG5580-PE 268..567 33..362 180 22.5 Plus
sbb-PC 929 CG5580-PC 268..567 33..362 180 22.5 Plus
sbb-PF 939 CG5580-PF 278..577 33..362 180 22.5 Plus
sbb-PH 2302 CG5580-PH 268..567 33..362 180 22.5 Plus
sbb-PD 2302 CG5580-PD 268..567 33..362 180 22.5 Plus
sbb-PG 2312 CG5580-PG 278..577 33..362 180 22.5 Plus
sbb-PJ 2330 CG5580-PJ 278..577 33..362 180 22.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11644-PA 565 GI11644-PA 1..565 1..573 2060 79.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15737-PA 250 GL15737-PA 1..250 330..573 1035 86.1 Plus
Dper\GL15736-PA 243 GL15736-PA 1..231 1..243 623 74.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21169-PA 567 GA21169-PA 1..567 1..573 2113 81.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19656-PA 567 GM19656-PA 1..567 1..573 2328 93.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14830-PA 573 GD14830-PA 1..573 1..573 3075 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11325-PA 574 GJ11325-PA 1..574 1..573 2109 80.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16969-PA 626 GK16969-PA 1..626 1..573 2136 75.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19626-PA 569 GE19626-PA 1..569 1..573 3005 98.4 Plus
Dyak\GE23216-PA 327 GE23216-PA 9..326 122..440 1662 98.7 Plus

LD06278.hyp Sequence

Translation from 336 to 2057

> LD06278.hyp
MEQVDSSTELHLNRKDLAALAEDVVKEEVILESSSHHHHHHHHQLDTKVR
MVTSSSNDNSGSGGASGGTSGAGGGNGGGGVVSVPVSLPIGSMITGTTFN
VITPDQLPPHFKPMLCVDNNGYLSGSTVSMGNDLKTIVIQQQQTQPGGGG
GGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEHAAGGASGVGGGGG
GTGGGSSGWSENPSTQHNEVFQIRCKTTCAELYRSKLGSGGRGRCVKYKD
KWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDEGTLTPHATNCSCT
VCCDDEAASGPVRLFTPYKRRKRNQTDLDMESGPKRKRNTHHSNNNNSNT
NNNNTSGSGANNCVDVTAAVAAATASVVDENNMFLSEENITSKDEPWAAL
NDSLDTSTELVDQSQMGNTYERETFVVNINDGSSIAVLDTSQSMKNIEHV
YCTMVKATNDFKRMLNDMKQSFERRIEVLQKERDAAVSAMRVQVHADIDD
PNISGSLHGNEIISAKKCANCNREALAECSLCRKTPYCSEFCQRKDWNAH
QVECTRNPQTTTQQVMLLIDDQS*

LD06278.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Deaf1-PB 573 CG8567-PB 1..573 1..573 3049 100 Plus
Deaf1-PD 576 CG8567-PD 1..576 1..573 3035 99.5 Plus
Deaf1-PA 576 CG8567-PA 1..576 1..573 3035 99.5 Plus
Deaf1-PE 536 CG8567-PE 7..536 44..573 2821 100 Plus
Deaf1-PC 539 CG8567-PC 7..539 44..573 2807 99.4 Plus