BDGP Sequence Production Resources |
Search the DGRC for LD06278
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 62 |
Well: | 78 |
Vector: | pBS SK- |
Associated Gene/Transcript | Deaf1-RB |
Protein status: | LD06278.pep: gold |
Preliminary Size: | 2388 |
Sequenced Size: | 2409 |
Gene | Date | Evidence |
---|---|---|
CG8567 | 2001-01-01 | Release 2 assignment |
CG8567 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8567 | 2003-02-28 | Blastp of sequenced clone |
Deaf1 | 2008-04-29 | Release 5.5 accounting |
Deaf1 | 2008-08-15 | Release 5.9 accounting |
Deaf1 | 2008-12-18 | 5.12 accounting |
2409 bp (2409 high quality bases) assembled on 2003-02-28
GenBank Submission: BT004907
> LD06278.complete AAGAAGAGGAGGATATCAACTTTTTTAGTAAATTAGTAAAGTTTAAGCTT AAAAAATGTAAATTGCAATGAACCACCAGCTGTAAATAGGGCAATGCAAC TTGAACGCGACCTGCGCGCAATTCGCATGTAAGTCGTGGTGAGCGCTGAA AAAAACGCGGATCGCGGCGGCAGCAACAACAACAACAACAACAGACCGTC CGTCGTCTCGGTAGACGTCGAATAATATACATATATCGCAATAATCCAAT TGCAAGTGGTAATCCGATGAACAATTCAAGTGCATTACTATCGTTGGACC GCAGAATAAGTGAAAGTGAACTGGCATAACAATACTATGGAACAGGTTGA CTCCTCCACCGAGCTGCACCTGAATAGGAAAGATCTGGCCGCGCTGGCCG AGGATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCAT CATCATCATCACCACCAGTTGGACACCAAGGTTCGCATGGTCACATCCTC CTCCAACGACAACAGTGGTAGCGGCGGCGCCAGTGGCGGTACAAGCGGAG CGGGCGGAGGAAACGGCGGTGGCGGTGTGGTTTCGGTGCCCGTATCCCTG CCCATCGGTTCGATGATAACCGGCACTACCTTCAATGTGATCACGCCCGA CCAGCTGCCCCCTCACTTCAAGCCGATGCTGTGCGTCGACAACAATGGCT ACCTGTCCGGCAGCACGGTCAGCATGGGCAACGACCTCAAGACGATCGTC ATCCAGCAACAGCAGACGCAACCAGGCGGCGGCGGTGGCGGCGCCAATAA TGCGGGCACCAATACGACCGCCACAAATACGATTGGACTGAATCACGATG GCTCCGGGAGCAACAATAGCCACGACAGCCTGGCCACCTTGGAGCACGCC GCGGGCGGAGCGAGTGGCGTCGGCGGTGGCGGCGGCGGAACGGGTGGTGG CTCCTCGGGATGGTCGGAGAACCCGTCAACCCAGCACAATGAGGTCTTCC AGATCCGCTGCAAAACCACCTGCGCCGAGTTATACCGCAGCAAGCTGGGC TCCGGCGGCCGTGGACGCTGTGTGAAGTACAAGGACAAGTGGCATACGCC CAGTGAGTTTGAGCATGTGTGTGGCCGGGGCTCCAGCAAGGATTGGAAGC GTTCGATCAAGTACGGCGGCAAATCGCTGCAGTCCCTCATCGATGAGGGT ACGCTCACGCCGCACGCGACCAACTGCAGCTGCACCGTCTGCTGCGACGA CGAAGCAGCTTCCGGCCCTGTCCGTCTCTTTACACCGTACAAGCGGCGGA AGCGGAATCAAACTGATCTCGATATGGAGTCTGGACCCAAACGCAAGCGT AACACCCATCATAGTAACAACAACAACAGTAACACCAATAACAACAACAC GAGCGGGAGCGGCGCCAACAACTGTGTGGATGTAACTGCAGCTGTGGCTG CTGCAACAGCCAGCGTGGTGGACGAGAACAACATGTTCCTGTCGGAAGAG AACATCACGTCCAAGGATGAGCCGTGGGCAGCGCTCAACGACAGCCTGGA CACCTCCACCGAGCTGGTCGATCAGTCGCAGATGGGCAACACGTACGAAC GGGAAACGTTTGTGGTGAACATCAACGATGGATCCTCCATCGCCGTCCTG GACACCAGCCAGTCGATGAAGAACATCGAGCACGTGTACTGCACCATGGT CAAGGCCACCAATGACTTCAAACGCATGCTTAACGACATGAAGCAGTCCT TCGAGCGTCGCATCGAGGTTCTGCAAAAGGAGCGCGATGCAGCGGTCAGC GCGATGCGTGTCCAAGTGCACGCGGACATCGATGATCCAAATATTTCAGG CTCCCTGCACGGCAACGAGATCATTTCGGCTAAGAAGTGCGCCAACTGTA ACCGCGAAGCATTGGCCGAGTGCTCACTGTGCCGAAAGACGCCGTACTGC TCGGAGTTCTGCCAGCGGAAGGATTGGAATGCTCACCAGGTGGAGTGCAC AAGGAATCCACAAACGACAACGCAGCAGGTCATGCTGTTGATCGACGATC AGTCCTAAGCAACGTAACGAAATGTACATACAAATTTTACTACTAATTAA TACGATTATAGGAAGTCGACCCCCCCTCCCCCAAGTCGCTAAAGTCCTTG CAGTTCGGTTCAGGTCAAACACCTGTAGTCCACTCCCACTCCCTTCCCCC TCGACCCCTCTCTTCCCCCAAAGTTCCCATTAGAAGGCCTGCATCCTCTT AGACGTATGTCCTACATTAATGTAATTCTTAACGTACATATAACTATATA AATATATATACATTTTACTATTGAACGTAGGGCAAGCCAGCAAAGAAAAA AAAAATAACAAAAAACAAGCGAAACGAAAGTAAAATTAATTAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Deaf1.a | 3035 | Deaf1.a | 81..1338 | 1..1258 | 6290 | 100 | Plus |
Deaf1.g | 3663 | Deaf1.g | 81..1338 | 1..1258 | 6290 | 100 | Plus |
Deaf1.c | 3753 | Deaf1.c | 81..1338 | 1..1258 | 6290 | 100 | Plus |
Deaf1.a | 3035 | Deaf1.a | 1345..2494 | 1256..2405 | 5720 | 99.8 | Plus |
Deaf1.g | 3663 | Deaf1.g | 1345..2494 | 1256..2405 | 5720 | 99.8 | Plus |
Deaf1.c | 3753 | Deaf1.c | 1345..2494 | 1256..2405 | 5720 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 19808579..19809371 | 466..1258 | 3935 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 19817677..19818307 | 1257..1887 | 3155 | 100 | Plus |
chr3L | 24539361 | chr3L | 19818380..19818885 | 1886..2391 | 2485 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 19807569..19808036 | 1..468 | 2325 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 19819209..19820001 | 466..1258 | 3965 | 100 | Plus |
3L | 28110227 | 3L | 19828315..19828945 | 1257..1887 | 3155 | 100 | Plus |
3L | 28110227 | 3L | 19829018..19829537 | 1886..2405 | 2570 | 99.6 | Plus |
3L | 28110227 | 3L | 19818199..19818666 | 1..468 | 2340 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 19812309..19813101 | 466..1258 | 3965 | 100 | Plus |
3L | 28103327 | 3L | 19821415..19822045 | 1257..1887 | 3155 | 100 | Plus |
3L | 28103327 | 3L | 19822118..19822637 | 1886..2405 | 2570 | 99.6 | Plus |
3L | 28103327 | 3L | 19811299..19811766 | 1..468 | 2340 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-A | 13424 | TART-A 13424bp | 7729..7828 | 2250..2154 | 115 | 59 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19808691..19809371 | 578..1258 | 99 | -> | Plus |
chr3L | 19817679..19818307 | 1259..1887 | 94 | -> | Plus |
chr3L | 19818382..19818833 | 1888..2339 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 1..1722 | 337..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 1..1722 | 337..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 1..1722 | 337..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 1..1722 | 337..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 1..1722 | 337..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 20..2410 | 1..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 20..2410 | 1..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 26..2416 | 1..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 20..2410 | 1..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Deaf1-RB | 26..2416 | 1..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19818199..19818666 | 1..468 | 100 | -> | Plus |
3L | 19819212..19820001 | 469..1258 | 100 | -> | Plus |
3L | 19828317..19828945 | 1259..1887 | 100 | -> | Plus |
3L | 19829020..19829523 | 1888..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19818199..19818666 | 1..468 | 100 | -> | Plus |
3L | 19819212..19820001 | 469..1258 | 100 | -> | Plus |
3L | 19828317..19828945 | 1259..1887 | 100 | -> | Plus |
3L | 19829020..19829523 | 1888..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19818199..19818666 | 1..468 | 100 | -> | Plus |
3L | 19819212..19820001 | 469..1258 | 100 | -> | Plus |
3L | 19828317..19828945 | 1259..1887 | 100 | -> | Plus |
3L | 19829020..19829523 | 1888..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19811299..19811766 | 1..468 | 100 | -> | Plus |
arm_3L | 19812312..19813101 | 469..1258 | 100 | -> | Plus |
arm_3L | 19821417..19822045 | 1259..1887 | 100 | -> | Plus |
arm_3L | 19822120..19822623 | 1888..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19811299..19811766 | 1..468 | 100 | -> | Plus |
3L | 19812312..19813101 | 469..1258 | 100 | -> | Plus |
3L | 19821417..19822045 | 1259..1887 | 100 | -> | Plus |
3L | 19822120..19822623 | 1888..2391 | 100 | Plus |
Translation from 336 to 2057
> LD06278.pep MEQVDSSTELHLNRKDLAALAEDVVKEEVILESSSHHHHHHHHQLDTKVR MVTSSSNDNSGSGGASGGTSGAGGGNGGGGVVSVPVSLPIGSMITGTTFN VITPDQLPPHFKPMLCVDNNGYLSGSTVSMGNDLKTIVIQQQQTQPGGGG GGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEHAAGGASGVGGGGG GTGGGSSGWSENPSTQHNEVFQIRCKTTCAELYRSKLGSGGRGRCVKYKD KWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDEGTLTPHATNCSCT VCCDDEAASGPVRLFTPYKRRKRNQTDLDMESGPKRKRNTHHSNNNNSNT NNNNTSGSGANNCVDVTAAVAAATASVVDENNMFLSEENITSKDEPWAAL NDSLDTSTELVDQSQMGNTYERETFVVNINDGSSIAVLDTSQSMKNIEHV YCTMVKATNDFKRMLNDMKQSFERRIEVLQKERDAAVSAMRVQVHADIDD PNISGSLHGNEIISAKKCANCNREALAECSLCRKTPYCSEFCQRKDWNAH QVECTRNPQTTTQQVMLLIDDQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23595-PA | 583 | GF23595-PA | 1..583 | 1..573 | 2239 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16060-PA | 572 | GG16060-PA | 1..572 | 1..573 | 3037 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14660-PA | 561 | GH14660-PA | 1..561 | 1..573 | 2073 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Deaf1-PB | 573 | CG8567-PB | 1..573 | 1..573 | 3049 | 100 | Plus |
Deaf1-PD | 576 | CG8567-PD | 1..576 | 1..573 | 3035 | 99.5 | Plus |
Deaf1-PA | 576 | CG8567-PA | 1..576 | 1..573 | 3035 | 99.5 | Plus |
Deaf1-PE | 536 | CG8567-PE | 7..536 | 44..573 | 2821 | 100 | Plus |
Deaf1-PC | 539 | CG8567-PC | 7..539 | 44..573 | 2807 | 99.4 | Plus |
sbb-PE | 929 | CG5580-PE | 268..567 | 33..362 | 180 | 22.5 | Plus |
sbb-PC | 929 | CG5580-PC | 268..567 | 33..362 | 180 | 22.5 | Plus |
sbb-PF | 939 | CG5580-PF | 278..577 | 33..362 | 180 | 22.5 | Plus |
sbb-PH | 2302 | CG5580-PH | 268..567 | 33..362 | 180 | 22.5 | Plus |
sbb-PD | 2302 | CG5580-PD | 268..567 | 33..362 | 180 | 22.5 | Plus |
sbb-PG | 2312 | CG5580-PG | 278..577 | 33..362 | 180 | 22.5 | Plus |
sbb-PJ | 2330 | CG5580-PJ | 278..577 | 33..362 | 180 | 22.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11644-PA | 565 | GI11644-PA | 1..565 | 1..573 | 2060 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15737-PA | 250 | GL15737-PA | 1..250 | 330..573 | 1035 | 86.1 | Plus |
Dper\GL15736-PA | 243 | GL15736-PA | 1..231 | 1..243 | 623 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21169-PA | 567 | GA21169-PA | 1..567 | 1..573 | 2113 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19656-PA | 567 | GM19656-PA | 1..567 | 1..573 | 2328 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14830-PA | 573 | GD14830-PA | 1..573 | 1..573 | 3075 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11325-PA | 574 | GJ11325-PA | 1..574 | 1..573 | 2109 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16969-PA | 626 | GK16969-PA | 1..626 | 1..573 | 2136 | 75.6 | Plus |
Translation from 336 to 2057
> LD06278.hyp MEQVDSSTELHLNRKDLAALAEDVVKEEVILESSSHHHHHHHHQLDTKVR MVTSSSNDNSGSGGASGGTSGAGGGNGGGGVVSVPVSLPIGSMITGTTFN VITPDQLPPHFKPMLCVDNNGYLSGSTVSMGNDLKTIVIQQQQTQPGGGG GGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEHAAGGASGVGGGGG GTGGGSSGWSENPSTQHNEVFQIRCKTTCAELYRSKLGSGGRGRCVKYKD KWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDEGTLTPHATNCSCT VCCDDEAASGPVRLFTPYKRRKRNQTDLDMESGPKRKRNTHHSNNNNSNT NNNNTSGSGANNCVDVTAAVAAATASVVDENNMFLSEENITSKDEPWAAL NDSLDTSTELVDQSQMGNTYERETFVVNINDGSSIAVLDTSQSMKNIEHV YCTMVKATNDFKRMLNDMKQSFERRIEVLQKERDAAVSAMRVQVHADIDD PNISGSLHGNEIISAKKCANCNREALAECSLCRKTPYCSEFCQRKDWNAH QVECTRNPQTTTQQVMLLIDDQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Deaf1-PB | 573 | CG8567-PB | 1..573 | 1..573 | 3049 | 100 | Plus |
Deaf1-PD | 576 | CG8567-PD | 1..576 | 1..573 | 3035 | 99.5 | Plus |
Deaf1-PA | 576 | CG8567-PA | 1..576 | 1..573 | 3035 | 99.5 | Plus |
Deaf1-PE | 536 | CG8567-PE | 7..536 | 44..573 | 2821 | 100 | Plus |
Deaf1-PC | 539 | CG8567-PC | 7..539 | 44..573 | 2807 | 99.4 | Plus |