Clone LD06317 Report

Search the DGRC for LD06317

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:63
Well:17
Vector:pBS SK-
Associated Gene/TranscriptCG3402-RA
Protein status:LD06317.pep: gold
Preliminary Size:1197
Sequenced Size:1008

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3402 2001-01-01 Release 2 assignment
CG3402 2003-01-01 Sim4 clustering to Release 3
CG3402 2003-03-19 Blastp of sequenced clone
CG3402 2008-04-29 Release 5.5 accounting
CG3402 2008-08-15 Release 5.9 accounting
CG3402 2008-12-18 5.12 accounting

Clone Sequence Records

LD06317.complete Sequence

1008 bp (1008 high quality bases) assembled on 2003-03-19

GenBank Submission: AY069359

> LD06317.complete
CTTAAGACGAATTTACCAGCGGAATCTTAGCTAATCTAGCAAATTAAAGT
TAGTCAAAGCATCGGTAGACATGGCGAAAATGGCATTCCAGCACCAGGCC
GGCACGGCGATGGAGTGCTTGAGCATTCCCATCACGCTGCACAAGGAGAA
GGACTACGACCAGGAGGGGCGCGAGATCCTCAAGTGCGGCTTCAAGATCG
GCGGCGGAATCGACCAGGACTACAAGAAAAGCCCTCAGGGATACACGGAT
TATGGCATCTATGTGACCGAGGTGCACGAGGGCAGTCCCGCCGCCCGAGC
AGGTCTGCGGATCCACGACAAGATCCTGCAGTGCAACGGCTACGACTTCA
CCATGGTCACCCACAAAAAGGCCGTGAGCTACATCCGGAAAAACCCGATA
CTCAACATGCTGGTGGCCCGCAAGGGCGTGACCTCCACATAAGTGGTGCT
CGGAGCAGGGTCTCCACAGACTACAGCAGTATTTAAGCGGCATTTAAACT
ATCCCCTCCACCGCCCCTCTGGGCTACGGATCTCTTTGCCTCCTGCAACC
TATGCGAATACTTAGAACTACCATATTATACATATTAATTCATTACGTAT
GCATATCGCACACACATGTAGCCAGACGTAAATGTAGCACCTAGTAATGC
TTCTTGTTGAATTCGATTTCTTTGCCTCTCCATCACTTGTTGAACGAATC
GCCAAGCTCCTAAGTGTAAAACAGATTGCCAAATACCGATACAAACAAAC
ACTCCCAGAAACAACAGGCTCGAATATAAACAATTTTGTACTTTTATACG
TGCAGACCATTCCAAAACCAAACAGAAGCAGCAGCCGAACGCAGAGTTGT
TGAAAGAAACATACATTCATAGTACATACTTGTGATAAATGACTTTAACT
GTGCAGATATGTGCGAAGAAGGCGCATCACTTAAGTTTAAAATTGAGTTT
TTAATGTTATATTGCATTTGAATAAATGTTTGCTAAATAAAAAAAAAAAA
AAAAAAAA

LD06317.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3402-RA 1089 CG3402-RA 83..1073 1..991 4955 100 Plus
CG12030.d 2350 CG12030.d 2129..2350 991..770 1110 100 Minus
CG12030-RA 2227 CG12030-RA 2129..2227 991..893 495 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 651305..652039 988..254 3630 99.6 Minus
chr3L 24539361 chr3L 652206..652335 254..125 650 100 Minus
chr3L 24539361 chr3L 652474..652597 124..1 620 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:52:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 651539..652276 991..254 3690 100 Minus
3L 28110227 3L 652443..652572 254..125 650 100 Minus
3L 28110227 3L 652711..652834 124..1 620 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 651539..652276 991..254 3690 100 Minus
3L 28103327 3L 652443..652572 254..125 650 100 Minus
3L 28103327 3L 652711..652834 124..1 620 100 Minus
Blast to na_te.dros performed 2019-03-16 08:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 1032..1124 695..782 112 60.2 Plus

LD06317.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:43:50 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 651305..652039 254..988 99 <- Minus
chr3L 652207..652335 125..253 100 <- Minus
chr3L 652474..652597 1..124 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:38:19 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 1..372 71..442 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:25 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 1..372 71..442 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:56:30 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 1..372 71..442 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:50 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 1..372 71..442 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:47:48 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 1..372 71..442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:57:51 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 1..988 1..988 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:25 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 1..988 1..988 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:56:30 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 48..1035 1..988 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:51 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 1..988 1..988 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:47:48 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
CG3402-RA 48..1035 1..988 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:50 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
3L 651542..652276 254..988 100 <- Minus
3L 652444..652572 125..253 100 <- Minus
3L 652711..652834 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:50 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
3L 651542..652276 254..988 100 <- Minus
3L 652444..652572 125..253 100 <- Minus
3L 652711..652834 1..124 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:50 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
3L 651542..652276 254..988 100 <- Minus
3L 652444..652572 125..253 100 <- Minus
3L 652711..652834 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:56:30 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 651542..652276 254..988 100 <- Minus
arm_3L 652444..652572 125..253 100 <- Minus
arm_3L 652711..652834 1..124 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:03 Download gff for LD06317.complete
Subject Subject Range Query Range Percent Splice Strand
3L 651542..652276 254..988 100 <- Minus
3L 652444..652572 125..253 100 <- Minus
3L 652711..652834 1..124 100   Minus

LD06317.pep Sequence

Translation from 70 to 441

> LD06317.pep
MAKMAFQHQAGTAMECLSIPITLHKEKDYDQEGREILKCGFKIGGGIDQD
YKKSPQGYTDYGIYVTEVHEGSPAARAGLRIHDKILQCNGYDFTMVTHKK
AVSYIRKNPILNMLVARKGVTST*

LD06317.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10058-PA 123 GF10058-PA 1..123 1..123 659 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14653-PA 123 GG14653-PA 1..123 1..123 659 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16044-PA 123 GH16044-PA 1..123 1..123 659 100 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3402-PA 123 CG3402-PA 1..123 1..123 652 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12308-PA 123 GI12308-PA 1..123 1..123 659 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20847-PA 81 GL20847-PA 1..81 43..123 430 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17428-PA 123 GA17428-PA 1..123 1..123 659 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14267-PA 123 GM14267-PA 1..123 1..123 659 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13244-PA 123 GJ13244-PA 1..123 1..123 659 100 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16689-PA 123 GK16689-PA 1..123 1..123 659 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21011-PA 123 GE21011-PA 1..123 1..123 659 100 Plus

LD06317.hyp Sequence

Translation from 70 to 441

> LD06317.hyp
MAKMAFQHQAGTAMECLSIPITLHKEKDYDQEGREILKCGFKIGGGIDQD
YKKSPQGYTDYGIYVTEVHEGSPAARAGLRIHDKILQCNGYDFTMVTHKK
AVSYIRKNPILNMLVARKGVTST*

LD06317.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3402-PA 123 CG3402-PA 1..123 1..123 652 100 Plus