Clone LD06533 Report

Search the DGRC for LD06533

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:65
Well:33
Vector:pBS SK-
Associated Gene/TranscriptCG10347-RA
Protein status:LD06533.pep: gold
Sequenced Size:1973

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10347 2003-01-01 Sim4 clustering to Release 3
CG10347 2005-01-26 Blastp of sequenced clone
CG10347 2008-04-29 Release 5.5 accounting
CG10347 2008-08-15 Release 5.9 accounting
CG10347 2008-12-18 5.12 accounting

Clone Sequence Records

LD06533.complete Sequence

1973 bp (1973 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021409

> LD06533.complete
TCTACTACCGATTTGATTTGATTTGTTTTGGAATATCTATCTCTATTTTT
TCGAAATCTCCAATATAATCCAACTCAGCATTGGCGCAGTAAAGCAAGAT
GCCGGTGGTGGAACTGAAAGTGGATCGCAACCTGGTGTGCTCGGACTTTT
CTGGCTACAAATTGGCATTCGATTCGGTGCCTGTTCTTCGCCAGGAACTT
GGATGTGATGCCTACGTGCTGGATCCGAGCAGCAATCAGTTCTCGCTGCT
GCACACGGAGCTCTTTGCCCGACACAATCACCTGGTAGCCGATCCATGGA
TGCGCCACTGCAGCTACTTCTTTAACAAGCGCCACCAGCTGGTGCAGTGC
AACTACGATCTACAGACTGGACGCGCACGTGCCCAGCGCGTTGTCCTCAC
GGTGGACTATAGGGATCAGGGCGATGGGGAACTACATCGGTCGGGTGACT
ACAACTACACCATAGTTTTCGTTTCGGAACGATTCTGTGTGATCTGCGAC
GGTATAACCAGTTACCATCTGGTGGACACCGGCGACAGAACGCGCACCGA
TGTGCAGGAGTGGCAACGGATTACACGCTCGCCGGTGAATAATAACAGTG
GTCATCGCGGCTTTGCACTCTTCGATGCCCGGCTGGATGTGCTGCAGGAA
CGTAAGCAGATCTCGCTGGTGGCCGGTCATGTGGCACGCCGTGATGCAGT
TGGCCAAGATCAGACGCACGTCTATTACATGGACTTGACCTGGGCACGGT
GGACTCATTCGCCCACCAATGACGAGTGGTCATATAATATCTGTCAACGG
CTGGAGACCACTGGCTCTGTGCACTACTGCGCCTTTGAGCCTCGCGCCGA
GTCCCTAGTCATTGCCAGCAACCGCGATGTTCAGACTCCCGAGGAGCGTC
GGGCAGCCGATGAAGCAGCCGCTGCCCGCTTGAATTCCTCAGGTGATCAC
GATGGCCAGCTGGAAAATGGAGGTCCACCTAGTTATAGCTGGTCCCAAAC
GGATAATAATGTGCTCATTCGTTTCAATGTTCCTTCAACTGCATCCGCTA
AAGAGTTTAACGTGAGCGGTTCTAAAACCACTGTCGTTGTAAAGCATCTG
GATGAGGTTATATTCGACGAAGAGTTATACGCCAGTGTGGGAGATGATTT
AAGTGCATTTAAGTTGGCTGAGAATGGCCTAGAATTGTCACTAACCAAGG
CGGAGATTCAGAACTGGCCACGTTTGTTCGCGCAGAAGAAAGATGACGTA
GCGGAGGAAGTACATCCAATGGAAGCTCCACCACTGCCCATTCCAAGTCT
GCAGGATCCCGTTGAAGAATGTGACTTAATATCCGCTGATGAAGAAATGA
AGATGGTACGCTTCAATTTGACCAGCGGGTGCATCACCCACACTATTTTT
CTTGGTCCCCCGCCACTGGTGCTCACCACCACGCTGCGTCCTGGCTTTCC
AGCCGCCTTTGCTACCCGCCAGGGCGTCGACGCCTCCATATGGCTACAGA
TGTACCAGCCCAGTCGTCCAGATGAATGGAGTGTCCGCCACGAGGGCCAG
CTGCACGCCTTCGGCTACGTGCAGGCCTCCAAGGTTGTGCGGAAATTCAC
CGTCTGCAGTCCGGATCTGGATTACGTAGCCATATGTGACCCTGTACGCT
ACGTTCTCGTCTACTTTCCGGCTAATAATTCGGCTGATGGTCTCCGCAGG
CGAAACGGACCTCCCGTCACCTTGGGTAAACAAAAGCTCATCACCTTGGG
CAACGAGATTGACGAGATTCTGGGCATAACCACGGCAAACAATCTGATCA
CCGTTCTCTCCAAGAAAGAACTGATACACCTGCAGGTGTAGACGGTGTTC
CGCTTTTCTTTTTTTCTCCATTTACTCTTAAAGAATTATGGCTTTACAAT
TCAAATTCTGAAATGTACATTTTTAAAAAATTAGTACTTTTAAAATTTAT
AATATAAATATATAAAAAAAAAA

LD06533.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10347-RA 2066 CG10347-RA 61..2031 1..1971 9855 100 Plus
CG10347-RB 2028 CG10347-RB 99..1993 77..1971 9475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11744530..11745885 1356..1 6675 99.5 Minus
chrX 22417052 chrX 11743863..11744470 1963..1356 2995 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11853401..11854756 1356..1 6780 100 Minus
X 23542271 X 11852727..11853342 1971..1356 3080 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11861499..11862854 1356..1 6780 100 Minus
X 23527363 X 11860825..11861440 1971..1356 3080 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:44:10 has no hits.

LD06533.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:45:17 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11743908..11744469 1357..1918 99 <- Minus
chrX 11744530..11745885 1..1356 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:38:35 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RA 1..1743 99..1841 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:11:55 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RA 1..1743 99..1841 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:56:39 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RB 1..1743 99..1841 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:56:32 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RA 1..1743 99..1841 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:48:16 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RB 1..1743 99..1841 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:06:19 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RA 18..1980 1..1963 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:11:55 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RA 18..1980 1..1963 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:56:39 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RA 16..1978 1..1963 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:56:32 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RA 18..1980 1..1963 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:48:16 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
CG10347-RA 16..1978 1..1963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:45:17 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
X 11852735..11853341 1357..1963 100 <- Minus
X 11853401..11854756 1..1356 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:45:17 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
X 11852735..11853341 1357..1963 100 <- Minus
X 11853401..11854756 1..1356 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:45:17 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
X 11852735..11853341 1357..1963 100 <- Minus
X 11853401..11854756 1..1356 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:56:39 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11746768..11747374 1357..1963 100 <- Minus
arm_X 11747434..11748789 1..1356 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:31:49 Download gff for LD06533.complete
Subject Subject Range Query Range Percent Splice Strand
X 11860833..11861439 1357..1963 100 <- Minus
X 11861499..11862854 1..1356 100   Minus

LD06533.pep Sequence

Translation from 98 to 1840

> LD06533.pep
MPVVELKVDRNLVCSDFSGYKLAFDSVPVLRQELGCDAYVLDPSSNQFSL
LHTELFARHNHLVADPWMRHCSYFFNKRHQLVQCNYDLQTGRARAQRVVL
TVDYRDQGDGELHRSGDYNYTIVFVSERFCVICDGITSYHLVDTGDRTRT
DVQEWQRITRSPVNNNSGHRGFALFDARLDVLQERKQISLVAGHVARRDA
VGQDQTHVYYMDLTWARWTHSPTNDEWSYNICQRLETTGSVHYCAFEPRA
ESLVIASNRDVQTPEERRAADEAAAARLNSSGDHDGQLENGGPPSYSWSQ
TDNNVLIRFNVPSTASAKEFNVSGSKTTVVVKHLDEVIFDEELYASVGDD
LSAFKLAENGLELSLTKAEIQNWPRLFAQKKDDVAEEVHPMEAPPLPIPS
LQDPVEECDLISADEEMKMVRFNLTSGCITHTIFLGPPPLVLTTTLRPGF
PAAFATRQGVDASIWLQMYQPSRPDEWSVRHEGQLHAFGYVQASKVVRKF
TVCSPDLDYVAICDPVRYVLVYFPANNSADGLRRRNGPPVTLGKQKLITL
GNEIDEILGITTANNLITVLSKKELIHLQV*

LD06533.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19495-PA 589 GF19495-PA 1..589 1..580 1794 57.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18827-PA 583 GG18827-PA 1..583 1..580 2434 78.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12766-PA 580 GH12766-PA 4..580 3..580 1514 49.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10347-PA 580 CG10347-PA 1..580 1..580 3071 100 Plus
CG10347-PB 580 CG10347-PB 1..580 1..580 3071 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15211-PA 581 GI15211-PA 4..581 3..580 1291 44.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20202-PA 507 GL20202-PA 1..322 1..322 874 52.3 Plus
Dper\GL20202-PA 507 GL20202-PA 347..507 420..580 559 61.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10263-PA 583 GA10263-PA 1..583 1..580 1637 52.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13039-PA 580 GM13039-PA 1..580 1..580 2614 86 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15964-PA 663 GD15964-PA 1..422 1..422 1879 86.3 Plus
Dsim\GD15964-PA 663 GD15964-PA 420..663 337..580 1120 84.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16622-PA 495 GJ16622-PA 1..268 1..269 853 58.9 Plus
Dvir\GJ16622-PA 495 GJ16622-PA 297..495 382..580 629 58.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25640-PA 583 GK25640-PA 1..583 1..580 1586 51.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17591-PA 585 GE17591-PA 1..585 1..580 2485 79.3 Plus

LD06533.hyp Sequence

Translation from 98 to 1840

> LD06533.hyp
MPVVELKVDRNLVCSDFSGYKLAFDSVPVLRQELGCDAYVLDPSSNQFSL
LHTELFARHNHLVADPWMRHCSYFFNKRHQLVQCNYDLQTGRARAQRVVL
TVDYRDQGDGELHRSGDYNYTIVFVSERFCVICDGITSYHLVDTGDRTRT
DVQEWQRITRSPVNNNSGHRGFALFDARLDVLQERKQISLVAGHVARRDA
VGQDQTHVYYMDLTWARWTHSPTNDEWSYNICQRLETTGSVHYCAFEPRA
ESLVIASNRDVQTPEERRAADEAAAARLNSSGDHDGQLENGGPPSYSWSQ
TDNNVLIRFNVPSTASAKEFNVSGSKTTVVVKHLDEVIFDEELYASVGDD
LSAFKLAENGLELSLTKAEIQNWPRLFAQKKDDVAEEVHPMEAPPLPIPS
LQDPVEECDLISADEEMKMVRFNLTSGCITHTIFLGPPPLVLTTTLRPGF
PAAFATRQGVDASIWLQMYQPSRPDEWSVRHEGQLHAFGYVQASKVVRKF
TVCSPDLDYVAICDPVRYVLVYFPANNSADGLRRRNGPPVTLGKQKLITL
GNEIDEILGITTANNLITVLSKKELIHLQV*

LD06533.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10347-PA 580 CG10347-PA 1..580 1..580 3071 100 Plus
CG10347-PB 580 CG10347-PB 1..580 1..580 3071 100 Plus