Clone LD06546 Report

Search the DGRC for LD06546

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:65
Well:46
Vector:pBS SK-
Associated Gene/TranscriptRnrL-RA
Protein status:LD06546.pep: gold
Preliminary Size:2529
Sequenced Size:2578

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5371 2000-02-14 Blastp of sequenced clone
CG5371 2001-01-01 Release 2 assignment
CG5371 2003-01-01 Sim4 clustering to Release 3
RnrL 2008-04-29 Release 5.5 accounting
RnrL 2008-08-15 Release 5.9 accounting
RnrL 2008-12-18 5.12 accounting

Clone Sequence Records

LD06546.complete Sequence

2578 bp (2578 high quality bases) assembled on 2000-02-14

GenBank Submission: AF132143

> LD06546.complete
TGCTTGCAACAATCAATTTGCCGCCTCTTGTGAAATATAGCAGTCAAGAT
GTTGAAGAACAAGTCCATGAAAACCTCAAAGTTATATGTTATTAAGAGAG
ATGGCAGGCAGGAGGAGGTGCACTTCGATAAAATAACCTCAAGAATCCAG
AAGCTTTGCTACAACTTGAACATGGATTTTGTTGATCCTGTTACTATCAC
CCTGCAAGTCATCAATGGTCTGTACTGCGGCGTGACCACCCAGGAGCTGG
ACAACTTGGCAGCAGAAATCGCAGCTGGATTAACATGCAATCATCCCGAC
TACGCCATCCTGGCTGCTCGCATTGCAGTGTCCAATTTGCACAAGGAAAC
CAAGAAGGCTTTTTCTGACGTCTTCGAGGATCTGTATAATCATGTAAACA
AGGAGACGAATCAAAAAGTGCCCTTGGTATCCGAGTTTCACTACAATGTG
GTTAAGAAGAACGCCACACGGCTGAACTCGTCCATAATCTATGATCGTGA
CTTTGGCTATAACTATTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTGC
TCAAAAGAAACGGAAAGATCGCAGAGCGACCGCAGCATATGCTGATGCGC
GTGGCGATCGGAATCCATGGAGAGGATATCGATGCGGCCGTGGAAACTTA
TAATCTTCTATCGGAGCGCTACTTCACGCATGCATCGCCCACACTGTTTG
CCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATG
ACAGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAGCAGTGCGCCAT
GATCTCCAAGTCCGCCGGTGGCATTGGACTTAACGTACACTGCATTCGTG
CAAAGGGCACATCGATTTGCGGCACAAATGGAACTTCGAATGGGTTGGTT
CCAATGCTGAGGGTTTTCAATAATGTGGCACGTTATGTGGATCAGGGAGG
CGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAACCCTGGCACTCGG
ATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACAGGCAAAGAAGAGAAT
CGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAA
ACGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTC
CTGGTCTCCACGACGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAA
TACGAGCAAGAGGGTCGGGCCAACCGAACGGTTAAGGCTCAATCCCTGTG
GTTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTGT
TCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTGGGCACAATC
AAGTGCAGCAACTTGTGTACGGAAATCGTAGAATACTCCGCACCGGATGA
GATAGCAGTCTGCAACTTGGCCTCCATTGCCCTCAACATGTTTGTAACGC
CGGAGAAGACGTATGATTTCAAGAAGCTCAAGGAAGTCACCAAGATAGTT
ACCAAAAATCTAAACAAGATAATTGATATCAACTATTATCCTCTGCCAGA
GGCAAGGAAATCCAATTTGAGGCACCGTCCCGTGGGCATTGGTATTCAGG
GATTCGCTGATGCTTTGATTCTCATGCGTTTCCCGTACGAAAGCGAAGAA
GCCGGTCTCTTGAATCAGCAGATATTCGAAACGATTTACTATGGCGCCTT
GGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTACG
AGGGCAGCCCGGTAAGCAAGGGAATTTTGCAATACGACATGTGGGACAAG
GTGCCAACGAACCTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAGGAT
GCACGGTGTCCGGAACTCTCTGCTTGTTGCTCCCATGCCCACGGCATCTA
CAGCTCAGATAATGGGCAATAATGAATCCTTCGAGCCCTACACCACAAAC
ATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCA
TTTGTTGCGCGACCTAACCGAGCTGGACTTGTGGGACGACGACATGAAGA
ACCAGATCATATCCAGCAGAGGATCGATCCAAAACATTGAGACCATACCC
CCGAAGGTGCGCGATCTGTACAAGACGGTGTGGGAAATCTCGGTCAAGTC
CACGATTAAAATGGCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAGT
CGTTCAACATACATGTGGCCGAGCCAAACTATGGAAAGCTGACCTCCATA
CATTTTTATTCCTGGAAAGCTGGTCTCAAAACCGGAATGTACTATCTGCG
CACCAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAACAAGAAGCAGG
GTGCAGTGAGCATGAATGGCCAGAATGGCACCGCCGAGGGAAGCCCCCAA
AAGTACGAAGAGGATAGGGAACGGAAAATGGCCGATATGGTTTGTTCGCT
CGAAAATAAGGACGCCTGCATGTCCTGCGGTTCTTAAAAGCATTCACATA
GACTAATATATTGTATTTAATTGTAATATCACTACGTTGAAATAAACTTA
AATTATGAATAAAAAAAAAAAAAAAAAA

LD06546.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
RnrL-RA 2679 RnrL-RA 88..2649 1..2562 12810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10323881..10326074 2560..367 10970 100 Minus
chr2L 23010047 chr2L 10326132..10326309 367..190 890 100 Minus
chr2L 23010047 chr2L 10326678..10326781 104..1 505 99 Minus
chr2L 23010047 chr2L 10326540..10326632 191..99 465 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10325024..10327219 2562..367 10980 100 Minus
2L 23513712 2L 10327277..10327454 367..190 890 100 Minus
2L 23513712 2L 10327823..10327926 104..1 505 99 Minus
2L 23513712 2L 10327685..10327777 191..99 465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10325024..10327219 2562..367 10980 100 Minus
2L 23513712 2L 10327277..10327454 367..190 890 100 Minus
2L 23513712 2L 10327823..10327926 104..1 505 99 Minus
2L 23513712 2L 10327685..10327777 191..99 465 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:21:38 has no hits.

LD06546.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:22:25 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10323881..10326073 368..2560 100 <- Minus
chr2L 10326132..10326309 190..367 100 <- Minus
chr2L 10326542..10326630 101..189 100 <- Minus
chr2L 10326682..10326781 1..100 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:38:37 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 1..2439 49..2487 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:36:23 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 1..2439 49..2487 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:24 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 1..2439 49..2487 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:12:22 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 1..2439 49..2487 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:38 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 1..2439 49..2487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:39:42 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 61..2620 1..2560 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:36:23 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 61..2620 1..2560 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:24 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 18..2577 1..2560 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:12:22 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 61..2620 1..2560 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:38 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
RnrL-RA 18..2577 1..2560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:25 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10327277..10327454 190..367 100 <- Minus
2L 10327687..10327775 101..189 100 <- Minus
2L 10327827..10327926 1..100 100   Minus
2L 10325026..10327218 368..2560 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:25 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10327277..10327454 190..367 100 <- Minus
2L 10327687..10327775 101..189 100 <- Minus
2L 10327827..10327926 1..100 100   Minus
2L 10325026..10327218 368..2560 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:25 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10327277..10327454 190..367 100 <- Minus
2L 10327687..10327775 101..189 100 <- Minus
2L 10327827..10327926 1..100 100   Minus
2L 10325026..10327218 368..2560 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:24 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10325026..10327218 368..2560 100 <- Minus
arm_2L 10327277..10327454 190..367 100 <- Minus
arm_2L 10327687..10327775 101..189 100 <- Minus
arm_2L 10327827..10327926 1..100 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:48:50 Download gff for LD06546.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10325026..10327218 368..2560 100 <- Minus
2L 10327277..10327454 190..367 100 <- Minus
2L 10327687..10327775 101..189 100 <- Minus
2L 10327827..10327926 1..100 100   Minus

LD06546.pep Sequence

Translation from 48 to 2486

> LD06546.pep
MLKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTI
TLQVINGLYCGVTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKE
TKKAFSDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDR
DFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVET
YNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA
MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQG
GGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM
KRVEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSL
WFAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPD
EIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLP
EARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGA
LEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIR
MHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNH
HLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVK
STIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYL
RTKPAANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCS
LENKDACMSCGS*

LD06546.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14111-PA 812 GF14111-PA 1..812 1..812 4160 93.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23946-PA 812 GG23946-PA 1..812 1..812 4294 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13371-PA 821 GH13371-PA 1..821 1..812 3921 86.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
RnrL-PA 812 CG5371-PA 1..812 1..812 4278 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18284-PA 771 GI18284-PA 1..771 48..812 3685 86.9 Plus
Dmoj\GI18283-PA 68 GI18283-PA 1..50 1..50 235 82 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19156-PA 821 GL19156-PA 1..821 1..812 4021 88.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11750-PA 812 GM11750-PA 1..812 1..812 4391 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22272-PA 812 GD22272-PA 1..812 1..812 4398 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14594-PA 818 GJ14594-PA 1..818 1..812 3922 86.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23355-PA 768 GK23355-PA 31..761 48..778 3599 88.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26085-PA 812 GE26085-PA 1..812 1..812 4361 98.3 Plus

LD06546.hyp Sequence

Translation from 48 to 2486

> LD06546.hyp
MLKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTI
TLQVINGLYCGVTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKE
TKKAFSDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDR
DFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVET
YNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA
MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQG
GGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM
KRVEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSL
WFAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPD
EIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLP
EARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGA
LEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIR
MHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNH
HLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVK
STIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYL
RTKPAANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCS
LENKDACMSCGS*

LD06546.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
RnrL-PA 812 CG5371-PA 1..812 1..812 4278 100 Plus