Clone LD06557 Report

Search the DGRC for LD06557

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:65
Well:57
Vector:pBS SK-
Associated Gene/Transcriptmip40-RA
Protein status:LD06557.pep: gold
Preliminary Size:1290
Sequenced Size:1093

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15119 2001-01-01 Release 2 assignment
CG15119 2001-11-29 Blastp of sequenced clone
CG15119 2003-01-01 Sim4 clustering to Release 3
mip40 2008-04-29 Release 5.5 accounting
mip40 2008-08-15 Release 5.9 accounting
mip40 2008-12-18 5.12 accounting

Clone Sequence Records

LD06557.complete Sequence

1093 bp (1093 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069362

> LD06557.complete
CGTAAGTCCGTTTGATTTCCGATTCGGCATTCGAAATTGTTTTCCCTTAA
TTTTCGTGTCGAATACAAGATTTCTGGAAATGAAGACTGTGCCGAAAAAG
AAGGAAACGGCCCTGCGCTTGCGGGAGTCGCGCCGTGAGGAGCAGAAACC
AGAGACGACAAACCTGCCGCCGGACGACGACGCAGAGTCGGATTTGCCCA
TTCGGGGCCGTCCCTCGAAGAAGCTGCTCATCCAGCAGCAACAGCAGCGT
CAGTACCAGGTAAAGCTAGATCCGAAAGTCAAGACGGTCACGTCGGGCTC
TAGCGAGAAGCCTTCGACATCCTCGAGTGCAGCCGCAGCCGGCGCCGGAG
GACGCATCAAGGCCAGGAGAGTGCTCTACAAGAAGAGCGTTGGAGCAGCG
GCAGTCGCCCAGAAGGCGCCCGGCGAGACCTACGTAATGCGCCTGTTTGA
GCGAAGTTTGGACCTGTCCAAATACCAGGATAAGACTCCTTTGTACCCCA
TATGCCGCGCATGGATGGCAAATCAACCCAAGAATCCAGCTGTGGGTGCA
TTTCAAACAGATGCTTCACTCACGGCCACCAAACGTGAGGACAACGGCGA
AGAAATCCTGTCCCAAATTAAAAGCGGCGAGATAAAGGTGATCAACCAGC
TCCCGCAGGCCAAGTCCACGGATCTGCCCATAATTCCGCCTCGTCTGGAG
TTCAGCCAGGAGGACAAGAAGCGGGAAAAGGCTCTCCAAGGTGCCAGTAC
CTCCGATCTTCTGTCCTCCAATATGAACCGCTGGAAGAAAGTGCGCGGAC
ACTGGATAAAGCATATCAAGAAGTATGAAAAGGAGCGATATGAAGTTATT
GACAAGATTATGAGCTTGGTCTGCAAAAACTGAAGCGTATCTAGGTGATT
TTGGAAGTGGTATAGAAAATGAAAAATAATTTGGATTAATTGTGCACAAA
GAATTAAAAAAAATCCTGTTTCCAAATCGAATATATATGCAAATAAGATG
CTTGTACACTTTATATACTTATATAAAATAAAATCAAATTTGTCAAGTAG
ACCACTTCAAGTCTATCAAGAGAAAAAAAAAAAAAAAAAAAAA

LD06557.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
mip40-RA 1099 mip40-RA 28..1099 1..1072 5360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15178273..15179344 1072..1 5360 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:53:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19291103..19292176 1074..1 5370 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19292302..19293375 1074..1 5370 100 Minus
Blast to na_te.dros performed 2019-03-16 04:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2397 222..272 120 70.6 Plus

LD06557.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:42:43 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15178273..15179344 1..1072 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:38:41 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 1..804 80..883 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:13 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 1..804 80..883 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:28 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 1..804 80..883 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:58 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 1..804 80..883 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:47:48 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 1..804 80..883 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:40 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 28..1099 1..1072 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:13 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 28..1099 1..1072 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:28 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 21..1092 1..1072 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:58 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 28..1099 1..1072 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:47:48 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
mip40-RA 21..1092 1..1072 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:43 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19291105..19292176 1..1072 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:43 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19291105..19292176 1..1072 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:43 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19291105..19292176 1..1072 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:28 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15178610..15179681 1..1072 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:23 Download gff for LD06557.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19292304..19293375 1..1072 100   Minus

LD06557.hyp Sequence

Translation from 0 to 882

> LD06557.hyp
VSPFDFRFGIRNCFPLIFVSNTRFLEMKTVPKKKETALRLRESRREEQKP
ETTNLPPDDDAESDLPIRGRPSKKLLIQQQQQRQYQVKLDPKVKTVTSGS
SEKPSTSSSAAAAGAGGRIKARRVLYKKSVGAAAVAQKAPGETYVMRLFE
RSLDLSKYQDKTPLYPICRAWMANQPKNPAVGAFQTDASLTATKREDNGE
EILSQIKSGEIKVINQLPQAKSTDLPIIPPRLEFSQEDKKREKALQGAST
SDLLSSNMNRWKKVRGHWIKHIKKYEKERYEVIDKIMSLVCKN*

LD06557.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
mip40-PA 267 CG15119-PA 1..267 27..293 1358 100 Plus

LD06557.pep Sequence

Translation from 79 to 882

> LD06557.pep
MKTVPKKKETALRLRESRREEQKPETTNLPPDDDAESDLPIRGRPSKKLL
IQQQQQRQYQVKLDPKVKTVTSGSSEKPSTSSSAAAAGAGGRIKARRVLY
KKSVGAAAVAQKAPGETYVMRLFERSLDLSKYQDKTPLYPICRAWMANQP
KNPAVGAFQTDASLTATKREDNGEEILSQIKSGEIKVINQLPQAKSTDLP
IIPPRLEFSQEDKKREKALQGASTSDLLSSNMNRWKKVRGHWIKHIKKYE
KERYEVIDKIMSLVCKN*

LD06557.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13291-PA 262 GF13291-PA 1..262 1..267 944 71.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20917-PA 265 GG20917-PA 1..265 1..267 1095 85.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22695-PA 273 GH22695-PA 17..272 10..267 563 51.5 Plus
Dgri\GH11218-PA 290 GH11218-PA 113..289 92..266 320 37.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
mip40-PA 267 CG15119-PA 1..267 1..267 1358 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20623-PA 270 GI20623-PA 1..268 1..266 672 54.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16832-PA 264 GL16832-PA 14..261 9..266 757 57 Plus
Dper\GL26281-PA 133 GL26281-PA 1..123 141..261 314 43.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13507-PB 256 GA13507-PB 8..253 9..266 740 56.7 Plus
Dpse\GA23668-PA 255 GA23668-PA 93..245 111..261 410 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19840-PA 270 GM19840-PA 11..270 11..267 1169 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25330-PA 267 GD25330-PA 1..267 1..267 1205 92.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19663-PA 265 GJ19663-PA 1..263 1..266 672 56.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20944-PA 289 GK20944-PA 14..281 9..266 619 51.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13855-PA 266 GE13855-PA 1..266 1..267 1072 82.8 Plus