Clone LD06637 Report

Search the DGRC for LD06637

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:66
Well:37
Vector:pBS SK-
Associated Gene/TranscriptHIP-RA
Protein status:LD06637.pep: gold
Sequenced Size:2048

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32789 2009-06-08 Manual selection by Joe Carlson

Clone Sequence Records

LD06637.complete Sequence

2048 bp assembled on 2009-09-30

GenBank Submission: BT099906.1

> LD06637.complete
CAAAAGTGGACGTAAAGCTAAGCAAATATTGCAGGACATCAGATCTGAAA
ACATCAAGACAAAACGGAATTCAGAAATGGCTTTCACAATGCAAACCGGG
GATCTGAAGAAGCTGAAGTACTTCATCGACTTTGCGCTTGAGAATCCCAC
CTTCTTGAACATGCCGCAGCTGCAGTTCGTCAAAGATTTCGTGGAGAAGT
TTGGTGGCACGGTGCCGCCTGGCCAATTCAACGGTGGCAGCGCCGGAGGC
AAGTGCCCATTCGGCGGTGTTGCTGGTGCCAAGGCCAACGAGCCGGCCAA
TGCCCCCGAGGATAGCGAGGACGAAAAGTCCCTCTCCGATCCTGAGTCGG
ACGTGGAGCTGGACATGGAGGGTGTGATCGAGGCGGACAGCGACCCCGCC
CAACCCATGGGCAACTACAGCAAGAAGGCCACCGAAGAGGAGGTGGAGCA
GGCGAGCGAGCTGCGCGCCCAGGCGGCCTCCGCTTACGGCCAGCAGAAGT
TCGACGAGGCCATCGCCTTGTACACCAAGGCCATTGAACTGAGCCCGGGT
AATGCCCTTTTCCACGCTAAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAA
GCCGAATGCCTGCATTCGGGACTGCGACGTGGCGCTGGAACTCAACTCGG
ATTTGGCGGCTGGCTACAAGTTCAGGGGACGCGCCCGTCGCCTCCTCGGA
GATTTTGAGCTGGCTGCCCATGATTTGCGCCAAGCATGCAAGCTGGACTT
TGACGAGGAGACAGACGAGTGGCTAAAGGAGGTCACTCCGAATGCCAAGA
AAATCGAGCAGCATCGCTTGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAG
ATCAAGGAACGCCAGCGGGATCAGAGGCGCGCACGTAAGGAGCAGGAAAA
GCACAATGCCAGCTCTGGTGGATCATCTGGAGAATTTTCCGGTGGGAATC
CTGGTAACGGAAATATGTCTGATATACTGGGCGCCATGTCAGATCCCGAG
GTGTCAGCCGCCATTCAGGACATTTTGTCAAATCCGGGTAACATCACAAA
GTACGCGTCGAACCCGAAGATATACAACCTTATCAAGAAGATTGTGCCCG
GTGGAGATGTGGGTGCTGCCTTTGGCCAAGCGGGTGAAAAGGCTGGAAAG
CCGAGCGAGCCTAAGCCTAAAAAGGATTCCGCCGACTTCGTCGATGACGG
TTTGGACTAAGGTTTAGAAATGGGGCAGTAGTAAGACTGAAACATGCGTC
GATAAAAAGAAGTTAACAAACAATTACACGAAATCGAGCGAGATTACAAA
ACAACAAAGAAAGAGAAAGCAACAGAGTGCGGGGAAGAAGATGGACTACA
CGAAAAACAAAAGGGAAAGCAACTGCCTTACACATTTTTGCAGCTGGGAA
AAAACAAACATTTCCTAAGCTTTAACTTAACCAACACGTAAAAGAACGGG
CGACAATGGAGAAAATTCAAATATTCAAAATACTACAAGCAGTCAGAAGA
ATAAGCAACATTTATTTAAATCGAGAAGAAAGAGATGTTGGAGATGCTGG
AGACGCTTCTTCACATATTATTGAAAAGCATACTTGCGGCCATTAAAGTG
GCAAATGAAACTATACAAAGGAGCTAGAATATGCTTAAAAACTTCACATT
TGCAGTTCACAGGTAAATCAAAAGATTGTCCTGTAACGAACAAAACATGA
ATGTTTAGACGTCAAGTCAGATTCAAGGGTGCCGATCGATCTAGTTGAAC
TAAAGCTCGAGAAACAACCAAAAGAAAATAAAAAATATATATATGTTCAA
TAATATTAGCCTAAATTACCGAGAACGAAGAAACGGATAAAACTAATCGC
ATCATTTGGTCAAACAAAATTGTACTGAGTAGGATTTAAATCATATTGTA
TGCAAATGCATTTAGCCCCCCAACATGAAAGCAATCGCCCATTCATTCAC
ACACTCATTCACACACTCATTCACACACTCATTCAACCAGTGATCAATGG
AAATAAATAAACGAATCAACAAGAACCCGAAAAAAAAAAAAAAAAAAA

LD06637.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32789-RA 2096 CG32789-RA 24..2054 1..2031 10155 100 Plus
CG32789.a 2473 CG32789.a 24..2054 1..2031 10155 100 Plus
CG2947-RB 2139 CG2947-RB 157..2094 38..1973 9485 99.3 Plus
CG2947-RB 2139 CG2947-RB 2064..2139 1955..2030 380 100 Plus
CG2947-RB 2139 CG2947-RB 98..129 1..32 160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3693954..3694966 1017..2029 5065 100 Plus
chrX 22417052 chrX 3684871..3685873 1017..2029 4660 97.7 Plus
chrX 22417052 chrX 3684151..3684799 371..1019 3245 100 Plus
chrX 22417052 chrX 3693234..3693882 371..1019 3245 100 Plus
chrX 22417052 chrX 3692567..3692815 1..249 1245 100 Plus
chrU 10048995 chrU 6014921..6015169 249..1 1245 100 Minus
chrX 22417052 chrX 3683521..3683732 38..249 1045 99.5 Plus
chrX 22417052 chrX 3683812..3683937 249..374 630 100 Plus
chrX 22417052 chrX 3692895..3693020 249..374 630 100 Plus
chrU 10048995 chrU 6014716..6014841 374..249 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 18:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
CR42197-RA 406 CR42197-RA 1..366 9..374 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3800558..3801572 1017..2031 5075 100 Plus
X 23542271 X 3791475..3792479 1017..2031 4670 97.7 Plus
X 23542271 X 3790755..3791403 371..1019 3245 100 Plus
X 23542271 X 3799838..3800486 371..1019 3245 100 Plus
X 23542271 X 3799171..3799419 1..249 1245 100 Plus
X 23542271 X 3790125..3790336 38..249 1045 99.5 Plus
X 23542271 X 3790416..3790541 249..374 630 100 Plus
X 23542271 X 3799499..3799624 249..374 630 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3808656..3809670 1017..2031 5075 100 Plus
X 23527363 X 3799573..3800531 1017..1973 4605 98.8 Plus
X 23527363 X 3807936..3808584 371..1019 3245 100 Plus
X 23527363 X 3798853..3799501 371..1019 3245 100 Plus
X 23527363 X 3807269..3807517 1..249 1245 100 Plus
X 23527363 X 3798223..3798434 38..249 1045 99.5 Plus
X 23527363 X 3807597..3807722 249..374 630 100 Plus
X 23527363 X 3798514..3798639 249..374 630 100 Plus
X 23527363 X 3800501..3800577 1955..2031 385 100 Plus
X 23527363 X 3798164..3798195 1..32 160 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:40:40 has no hits.

LD06637.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:41:53 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3692567..3692815 1..249 100 -> Plus
chrX 3692896..3693017 250..371 100 -> Plus
chrX 3693235..3693881 372..1018 100 -> Plus
chrX 3693956..3694966 1019..2029 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:56:26 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
CG32789-RA 1..1134 77..1210 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:35:48 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-RA 1..1134 77..1210 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:43 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-RA 1..1134 77..1210 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:11 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-RA 1..1134 77..1210 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 18:53:09 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
CR42197-RA 1..366 9..374 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-30 10:17:04 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
CG32789-RA 24..2052 1..2029 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:35:48 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-RA 24..2052 1..2029 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:43 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-RA 24..2052 1..2029 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:11 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-RA 22..2050 1..2029 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:41:53 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
X 3799171..3799419 1..249 100 -> Plus
X 3799500..3799621 250..371 100 -> Plus
X 3799839..3800485 372..1018 100 -> Plus
X 3800560..3801570 1019..2029 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:41:53 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
X 3799171..3799419 1..249 100 -> Plus
X 3799500..3799621 250..371 100 -> Plus
X 3799839..3800485 372..1018 100 -> Plus
X 3800560..3801570 1019..2029 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:41:53 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
X 3799171..3799419 1..249 100 -> Plus
X 3799500..3799621 250..371 100 -> Plus
X 3799839..3800485 372..1018 100 -> Plus
X 3800560..3801570 1019..2029 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:43 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3693204..3693452 1..249 100 -> Plus
arm_X 3693533..3693654 250..371 100 -> Plus
arm_X 3693872..3694518 372..1018 100 -> Plus
arm_X 3694593..3695603 1019..2029 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:19:17 Download gff for LD06637.complete
Subject Subject Range Query Range Percent Splice Strand
X 3807269..3807517 1..249 100 -> Plus
X 3807598..3807719 250..371 100 -> Plus
X 3807937..3808583 372..1018 100 -> Plus
X 3808658..3809668 1019..2029 100   Plus

LD06637.hyp Sequence

Translation from 0 to 1209

> LD06637.hyp
KSGRKAKQILQDIRSENIKTKRNSEMAFTMQTGDLKKLKYFIDFALENPT
FLNMPQLQFVKDFVEKFGGTVPPGQFNGGSAGGKCPFGGVAGAKANEPAN
APEDSEDEKSLSDPESDVELDMEGVIEADSDPAQPMGNYSKKATEEEVEQ
ASELRAQAASAYGQQKFDEAIALYTKAIELSPGNALFHAKRGQAFLKLKK
PNACIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLRQACKLDF
DEETDEWLKEVTPNAKKIEQHRLKQERRQAERKIKERQRDQRRARKEQEK
HNASSGGSSGEFSGGNPGNGNMSDILGAMSDPEVSAAIQDILSNPGNITK
YASNPKIYNLIKKIVPGGDVGAAFGQAGEKAGKPSEPKPKKDSADFVDDG
LD*

LD06637.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-PD 377 CG2947-PD 1..377 26..402 1955 100 Plus
HIP-R-PB 377 CG2947-PB 1..377 26..402 1955 100 Plus
HIP-R-PA 377 CG2947-PA 1..377 26..402 1955 100 Plus
HIP-PA 377 CG32789-PA 1..377 26..402 1955 100 Plus

LD06637.pep Sequence

Translation from 1 to 1209

> LD06637.pep
KSGRKAKQILQDIRSENIKTKRNSEMAFTMQTGDLKKLKYFIDFALENPT
FLNMPQLQFVKDFVEKFGGTVPPGQFNGGSAGGKCPFGGVAGAKANEPAN
APEDSEDEKSLSDPESDVELDMEGVIEADSDPAQPMGNYSKKATEEEVEQ
ASELRAQAASAYGQQKFDEAIALYTKAIELSPGNALFHAKRGQAFLKLKK
PNACIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLRQACKLDF
DEETDEWLKEVTPNAKKIEQHRLKQERRQAERKIKERQRDQRRARKEQEK
HNASSGGSSGEFSGGNPGNGNMSDILGAMSDPEVSAAIQDILSNPGNITK
YASNPKIYNLIKKIVPGGDVGAAFGQAGEKAGKPSEPKPKKDSADFVDDG
LD*

LD06637.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19147-PA 386 GF19147-PA 1..386 26..402 1252 73.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18670-PA 388 GG18670-PA 1..388 26..402 1519 80.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24750-PA 394 GH24750-PA 1..394 26..402 1166 62.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-PD 377 CG2947-PD 1..377 26..402 1955 100 Plus
HIP-R-PB 377 CG2947-PB 1..377 26..402 1955 100 Plus
HIP-R-PA 377 CG2947-PA 1..377 26..402 1955 100 Plus
HIP-PA 377 CG32789-PA 1..377 26..402 1955 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14722-PA 411 GI14722-PA 1..411 26..402 1220 63.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16565-PA 425 GL16565-PA 1..425 26..402 1194 60.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15538-PA 427 GA15538-PA 1..427 26..402 1202 59.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12305-PA 377 GM12305-PA 1..377 26..402 1857 95.2 Plus
Dsec\GM18717-PA 270 GM18717-PA 1..270 26..295 1379 95.9 Plus
Dsec\GM18718-PA 101 GM18718-PA 11..101 312..402 427 92.3 Plus
Dsec\GM18427-PA 289 GM18427-PA 16..111 153..248 148 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16651-PA 377 GD16651-PA 1..377 26..402 1802 93.1 Plus
Dsim\CHIP-PA 289 GD23704-PA 16..111 153..248 148 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19436-PA 424 GJ19436-PA 1..424 26..402 1226 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10216-PA 394 GK10216-PA 1..394 26..402 1227 65.6 Plus
Dwil\GK15258-PA 289 GK15258-PA 16..111 153..248 149 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16311-PA 387 GE16311-PA 1..387 26..402 1482 79.6 Plus